HEADER OXIDOREDUCTASE 03-JUN-04 1TJ2 TITLE CRYSTAL STRUCTURE OF E. COLI PUTA PROLINE DEHYDROGENASE DOMAIN TITLE 2 (RESIDUES 86-669) COMPLEXED WITH ACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PUTA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: E. COLI PUTA PROLINE DEHYDROGENASE DOMAIN (RESIDUES 86- COMPND 5 669); COMPND 6 EC: 1.5.99.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PUTA, POAA, B1014; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-23B KEYWDS BETA/ALPHA BARREL, FLAVOENZYME, FAD, PROLINE CATABOLISM, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.TANNER,M.ZHANG,T.A.WHITE,J.P.SCHUERMANN,B.A.BABAN,D.F.BECKER REVDAT 4 23-AUG-23 1TJ2 1 REMARK REVDAT 3 13-JUL-11 1TJ2 1 VERSN REVDAT 2 24-FEB-09 1TJ2 1 VERSN REVDAT 1 26-OCT-04 1TJ2 0 JRNL AUTH M.ZHANG,T.A.WHITE,J.P.SCHUERMANN,B.A.BABAN,D.F.BECKER, JRNL AUTH 2 J.J.TANNER JRNL TITL STRUCTURES OF THE ESCHERICHIA COLI PUTA PROLINE JRNL TITL 2 DEHYDROGENASE DOMAIN IN COMPLEX WITH COMPETITIVE INHIBITORS JRNL REF BIOCHEMISTRY V. 43 12539 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15449943 JRNL DOI 10.1021/BI048737E REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.ZHANG,J.J.TANNER REMARK 1 TITL DETECTION OF L-LACTATE IN POLYETHYLENE GLYCOL SOLUTIONS REMARK 1 TITL 2 CONFIRMS THE IDENTITY OF THE ACTIVE-SITE LIGAND IN A PROLINE REMARK 1 TITL 3 DEHYDROGENASE STRUCTURE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 985 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444904003786 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 45470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2223 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2458 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3477 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 3.31000 REMARK 3 B33 (A**2) : -3.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.693 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3602 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3308 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4889 ; 1.382 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7641 ; 0.829 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 5.649 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 544 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4007 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 717 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 811 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3906 ; 0.237 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2073 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 186 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.234 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 50 ; 0.268 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.117 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2234 ; 0.723 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3558 ; 1.327 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1368 ; 2.150 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1331 ; 3.466 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 147 REMARK 3 RESIDUE RANGE : A 244 A 610 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8270 45.3120 52.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.0599 T22: 0.0155 REMARK 3 T33: 0.1061 T12: 0.0018 REMARK 3 T13: 0.0184 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 0.8361 L22: 0.0872 REMARK 3 L33: 2.7869 L12: 0.0352 REMARK 3 L13: -0.6360 L23: 0.0689 REMARK 3 S TENSOR REMARK 3 S11: 0.1214 S12: 0.0449 S13: -0.0124 REMARK 3 S21: -0.0246 S22: 0.0927 S23: 0.0142 REMARK 3 S31: -0.1863 S32: 0.1411 S33: -0.2141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022672. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : APS 19ID REMARK 200 OPTICS : APS 19ID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45470 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : 0.40500 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1K87 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13-15 % PEG 3350, 60-190 MM CITRATE REMARK 280 BUFFER, PH 5.7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.42750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.54650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.71400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.42750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.54650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.71400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.42750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.54650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.71400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.42750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.54650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.71400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 141.09300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 86 REMARK 465 PRO A 87 REMARK 465 VAL A 148 REMARK 465 GLN A 149 REMARK 465 GLY A 150 REMARK 465 LEU A 151 REMARK 465 LEU A 152 REMARK 465 GLN A 153 REMARK 465 GLU A 154 REMARK 465 PHE A 155 REMARK 465 SER A 156 REMARK 465 LEU A 157 REMARK 465 SER A 158 REMARK 465 SER A 159 REMARK 465 GLN A 160 REMARK 465 GLU A 161 REMARK 465 ILE A 185 REMARK 465 ARG A 186 REMARK 465 ASP A 187 REMARK 465 LYS A 188 REMARK 465 ILE A 189 REMARK 465 SER A 190 REMARK 465 ASN A 191 REMARK 465 GLY A 192 REMARK 465 ASN A 193 REMARK 465 TRP A 194 REMARK 465 GLN A 195 REMARK 465 SER A 196 REMARK 465 HIS A 197 REMARK 465 ILE A 198 REMARK 465 GLY A 199 REMARK 465 ARG A 200 REMARK 465 SER A 201 REMARK 465 PRO A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 PHE A 205 REMARK 465 VAL A 206 REMARK 465 ASN A 207 REMARK 465 ALA A 208 REMARK 465 ALA A 209 REMARK 465 THR A 210 REMARK 465 TRP A 211 REMARK 465 GLY A 212 REMARK 465 LEU A 213 REMARK 465 LEU A 214 REMARK 465 PHE A 215 REMARK 465 THR A 216 REMARK 465 GLY A 217 REMARK 465 LYS A 218 REMARK 465 LEU A 219 REMARK 465 VAL A 220 REMARK 465 SER A 221 REMARK 465 THR A 222 REMARK 465 HIS A 223 REMARK 465 ASN A 224 REMARK 465 GLU A 225 REMARK 465 ALA A 226 REMARK 465 SER A 227 REMARK 465 LEU A 228 REMARK 465 SER A 229 REMARK 465 ARG A 230 REMARK 465 SER A 231 REMARK 465 LEU A 232 REMARK 465 ASN A 233 REMARK 465 ARG A 234 REMARK 465 ILE A 235 REMARK 465 ILE A 236 REMARK 465 GLY A 237 REMARK 465 LYS A 238 REMARK 465 SER A 239 REMARK 465 GLY A 240 REMARK 465 GLU A 241 REMARK 465 PRO A 242 REMARK 465 LEU A 243 REMARK 465 LEU A 611 REMARK 465 TYR A 612 REMARK 465 GLY A 613 REMARK 465 HIS A 614 REMARK 465 GLY A 615 REMARK 465 ARG A 616 REMARK 465 ASP A 617 REMARK 465 ASN A 618 REMARK 465 SER A 619 REMARK 465 ALA A 620 REMARK 465 GLY A 621 REMARK 465 LEU A 622 REMARK 465 ASP A 623 REMARK 465 LEU A 624 REMARK 465 ALA A 625 REMARK 465 ASN A 626 REMARK 465 GLU A 627 REMARK 465 HIS A 628 REMARK 465 ARG A 629 REMARK 465 LEU A 630 REMARK 465 ALA A 631 REMARK 465 SER A 632 REMARK 465 LEU A 633 REMARK 465 SER A 634 REMARK 465 SER A 635 REMARK 465 ALA A 636 REMARK 465 LEU A 637 REMARK 465 LEU A 638 REMARK 465 ASN A 639 REMARK 465 SER A 640 REMARK 465 ALA A 641 REMARK 465 LEU A 642 REMARK 465 GLN A 643 REMARK 465 LYS A 644 REMARK 465 TRP A 645 REMARK 465 GLN A 646 REMARK 465 ALA A 647 REMARK 465 LEU A 648 REMARK 465 PRO A 649 REMARK 465 MET A 650 REMARK 465 LEU A 651 REMARK 465 GLU A 652 REMARK 465 GLN A 653 REMARK 465 PRO A 654 REMARK 465 VAL A 655 REMARK 465 ALA A 656 REMARK 465 ALA A 657 REMARK 465 GLY A 658 REMARK 465 GLU A 659 REMARK 465 MET A 660 REMARK 465 SER A 661 REMARK 465 PRO A 662 REMARK 465 VAL A 663 REMARK 465 ILE A 664 REMARK 465 ASN A 665 REMARK 465 PRO A 666 REMARK 465 ALA A 667 REMARK 465 GLU A 668 REMARK 465 PRO A 669 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 88 N REMARK 470 GLN A 118 CB CG CD OE1 NE2 REMARK 470 GLU A 122 CD OE1 OE2 REMARK 470 LYS A 134 NZ REMARK 470 LYS A 139 NZ REMARK 470 SER A 142 OG REMARK 470 ALA A 145 CB REMARK 470 MET A 147 CB CG SD CE REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 GLU A 257 CG CD OE1 OE2 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 274 CD CE NZ REMARK 470 GLU A 277 CB CG CD OE1 OE2 REMARK 470 GLU A 451 CD OE1 OE2 REMARK 470 SER A 574 OG REMARK 470 LYS A 590 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 281 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 343 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 370 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 409 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 409 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 448 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 583 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 118 -62.44 -21.41 REMARK 500 LYS A 139 52.42 -103.69 REMARK 500 GLU A 372 -133.36 -119.40 REMARK 500 ASN A 502 47.43 70.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TIW RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH L-TETRAHYDRO-2-FUROIC ACID; CRYSTAL REMARK 900 GROWN IN PEG 3350 REMARK 900 RELATED ID: 1TJ0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH L-LACTATE; CRYSTAL GROWN IN PEG REMARK 900 3350 AND 10 MM L-LACTATE REMARK 900 RELATED ID: 1K87 RELATED DB: PDB REMARK 900 RELATED E. COLI PUTA PROLINE DEHYDROGENASE CONSTRUCT COMPLEXED WITH REMARK 900 L-LACTATE REMARK 900 RELATED ID: 1TJ1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH L-LACTATE; CRYSTAL GROWN IN PEG3000 DBREF 1TJ2 A 86 669 UNP P09546 PUTA_ECOLI 86 669 SEQRES 1 A 584 LEU PRO GLN SER VAL SER ARG ALA ALA ILE THR ALA ALA SEQRES 2 A 584 TYR ARG ARG PRO GLU THR GLU ALA VAL SER MET LEU LEU SEQRES 3 A 584 GLU GLN ALA ARG LEU PRO GLN PRO VAL ALA GLU GLN ALA SEQRES 4 A 584 HIS LYS LEU ALA TYR GLN LEU ALA ASP LYS LEU ARG ASN SEQRES 5 A 584 GLN LYS ASN ALA SER GLY ARG ALA GLY MET VAL GLN GLY SEQRES 6 A 584 LEU LEU GLN GLU PHE SER LEU SER SER GLN GLU GLY VAL SEQRES 7 A 584 ALA LEU MET CYS LEU ALA GLU ALA LEU LEU ARG ILE PRO SEQRES 8 A 584 ASP LYS ALA THR ARG ASP ALA LEU ILE ARG ASP LYS ILE SEQRES 9 A 584 SER ASN GLY ASN TRP GLN SER HIS ILE GLY ARG SER PRO SEQRES 10 A 584 SER LEU PHE VAL ASN ALA ALA THR TRP GLY LEU LEU PHE SEQRES 11 A 584 THR GLY LYS LEU VAL SER THR HIS ASN GLU ALA SER LEU SEQRES 12 A 584 SER ARG SER LEU ASN ARG ILE ILE GLY LYS SER GLY GLU SEQRES 13 A 584 PRO LEU ILE ARG LYS GLY VAL ASP MET ALA MET ARG LEU SEQRES 14 A 584 MET GLY GLU GLN PHE VAL THR GLY GLU THR ILE ALA GLU SEQRES 15 A 584 ALA LEU ALA ASN ALA ARG LYS LEU GLU GLU LYS GLY PHE SEQRES 16 A 584 ARG TYR SER TYR ASP MET LEU GLY GLU ALA ALA LEU THR SEQRES 17 A 584 ALA ALA ASP ALA GLN ALA TYR MET VAL SER TYR GLN GLN SEQRES 18 A 584 ALA ILE HIS ALA ILE GLY LYS ALA SER ASN GLY ARG GLY SEQRES 19 A 584 ILE TYR GLU GLY PRO GLY ILE SER ILE LYS LEU SER ALA SEQRES 20 A 584 LEU HIS PRO ARG TYR SER ARG ALA GLN TYR ASP ARG VAL SEQRES 21 A 584 MET GLU GLU LEU TYR PRO ARG LEU LYS SER LEU THR LEU SEQRES 22 A 584 LEU ALA ARG GLN TYR ASP ILE GLY ILE ASN ILE ASP ALA SEQRES 23 A 584 GLU GLU SER ASP ARG LEU GLU ILE SER LEU ASP LEU LEU SEQRES 24 A 584 GLU LYS LEU CYS PHE GLU PRO GLU LEU ALA GLY TRP ASN SEQRES 25 A 584 GLY ILE GLY PHE VAL ILE GLN ALA TYR GLN LYS ARG CYS SEQRES 26 A 584 PRO LEU VAL ILE ASP TYR LEU ILE ASP LEU ALA THR ARG SEQRES 27 A 584 SER ARG ARG ARG LEU MET ILE ARG LEU VAL LYS GLY ALA SEQRES 28 A 584 TYR TRP ASP SER GLU ILE LYS ARG ALA GLN MET ASP GLY SEQRES 29 A 584 LEU GLU GLY TYR PRO VAL TYR THR ARG LYS VAL TYR THR SEQRES 30 A 584 ASP VAL SER TYR LEU ALA CYS ALA LYS LYS LEU LEU ALA SEQRES 31 A 584 VAL PRO ASN LEU ILE TYR PRO GLN PHE ALA THR HIS ASN SEQRES 32 A 584 ALA HIS THR LEU ALA ALA ILE TYR GLN LEU ALA GLY GLN SEQRES 33 A 584 ASN TYR TYR PRO GLY GLN TYR GLU PHE GLN CYS LEU HIS SEQRES 34 A 584 GLY MET GLY GLU PRO LEU TYR GLU GLN VAL THR GLY LYS SEQRES 35 A 584 VAL ALA ASP GLY LYS LEU ASN ARG PRO CYS ARG ILE TYR SEQRES 36 A 584 ALA PRO VAL GLY THR HIS GLU THR LEU LEU ALA TYR LEU SEQRES 37 A 584 VAL ARG ARG LEU LEU GLU ASN GLY ALA ASN THR SER PHE SEQRES 38 A 584 VAL ASN ARG ILE ALA ASP THR SER LEU PRO LEU ASP GLU SEQRES 39 A 584 LEU VAL ALA ASP PRO VAL THR ALA VAL GLU LYS LEU ALA SEQRES 40 A 584 GLN GLN GLU GLY GLN THR GLY LEU PRO HIS PRO LYS ILE SEQRES 41 A 584 PRO LEU PRO ARG ASP LEU TYR GLY HIS GLY ARG ASP ASN SEQRES 42 A 584 SER ALA GLY LEU ASP LEU ALA ASN GLU HIS ARG LEU ALA SEQRES 43 A 584 SER LEU SER SER ALA LEU LEU ASN SER ALA LEU GLN LYS SEQRES 44 A 584 TRP GLN ALA LEU PRO MET LEU GLU GLN PRO VAL ALA ALA SEQRES 45 A 584 GLY GLU MET SER PRO VAL ILE ASN PRO ALA GLU PRO HET ACT A2002 4 HET FAD A2001 53 HETNAM ACT ACETATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 HOH *193(H2 O) HELIX 1 1 SER A 89 TYR A 99 1 11 HELIX 2 2 PRO A 102 ARG A 115 1 14 HELIX 3 3 PRO A 117 ASN A 137 1 21 HELIX 4 4 GLY A 162 ARG A 174 1 13 HELIX 5 5 ASP A 177 LEU A 184 1 8 HELIX 6 6 ILE A 244 GLU A 257 1 14 HELIX 7 7 GLN A 258 VAL A 260 5 3 HELIX 8 8 THR A 264 ASN A 271 1 8 HELIX 9 9 ALA A 272 GLU A 277 1 6 HELIX 10 10 THR A 293 ASN A 316 1 24 HELIX 11 11 ARG A 318 GLY A 323 1 6 HELIX 12 12 LYS A 329 LEU A 333 5 5 HELIX 13 13 ARG A 336 ALA A 340 5 5 HELIX 14 14 GLN A 341 TYR A 363 1 23 HELIX 15 15 GLU A 373 ASP A 375 5 3 HELIX 16 16 ARG A 376 PHE A 389 1 14 HELIX 17 17 GLU A 390 ALA A 394 5 5 HELIX 18 18 ARG A 409 SER A 424 1 16 HELIX 19 19 TYR A 437 GLY A 449 1 13 HELIX 20 20 ARG A 458 ALA A 475 1 18 HELIX 21 21 ASN A 488 ALA A 499 1 12 HELIX 22 22 TYR A 504 TYR A 508 5 5 HELIX 23 23 GLY A 517 GLU A 522 1 6 HELIX 24 24 LYS A 527 GLY A 531 5 5 HELIX 25 25 THR A 545 THR A 548 5 4 HELIX 26 26 LEU A 549 ALA A 562 1 14 HELIX 27 27 SER A 565 ILE A 570 1 6 HELIX 28 28 PRO A 576 VAL A 581 1 6 HELIX 29 29 ASP A 583 GLY A 596 1 14 SHEET 1 A 9 PHE A 280 MET A 286 0 SHEET 2 A 9 GLY A 325 ILE A 328 1 O SER A 327 N TYR A 284 SHEET 3 A 9 ILE A 367 ILE A 369 1 O ASN A 368 N ILE A 326 SHEET 4 A 9 ILE A 399 GLN A 404 1 O GLY A 400 N ILE A 367 SHEET 5 A 9 LEU A 428 VAL A 433 1 O VAL A 433 N ILE A 403 SHEET 6 A 9 ILE A 480 ALA A 485 1 O TYR A 481 N LEU A 428 SHEET 7 A 9 GLU A 509 LEU A 513 1 O GLU A 509 N PHE A 484 SHEET 8 A 9 CYS A 537 VAL A 543 1 O TYR A 540 N CYS A 512 SHEET 9 A 9 PHE A 280 MET A 286 1 N ASP A 285 O VAL A 543 SITE 1 AC1 6 LYS A 329 ALA A 436 TYR A 552 ARG A 555 SITE 2 AC1 6 ARG A 556 FAD A2001 SITE 1 AC2 34 ASP A 370 ALA A 371 VAL A 402 GLN A 404 SITE 2 AC2 34 TYR A 406 ARG A 431 VAL A 433 LYS A 434 SITE 3 AC2 34 GLY A 435 ALA A 436 TYR A 437 TRP A 438 SITE 4 AC2 34 TYR A 456 THR A 457 ARG A 458 LYS A 459 SITE 5 AC2 34 THR A 462 ALA A 485 THR A 486 HIS A 487 SITE 6 AC2 34 ASN A 488 GLN A 511 CYS A 512 LEU A 513 SITE 7 AC2 34 TYR A 540 ARG A 556 GLU A 559 SER A 565 SITE 8 AC2 34 PHE A 566 ACT A2002 HOH A2029 HOH A2045 SITE 9 AC2 34 HOH A2055 HOH A2115 CRYST1 72.855 141.093 145.428 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007088 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006876 0.00000