HEADER LYASE 03-JUN-04 1TJ7 TITLE STRUCTURE DETERMINATION AND REFINEMENT AT 2.44 A RESOLUTION OF TITLE 2 ARGININOSUCCINATE LYASE FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININOSUCCINATE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ARGINOSUCCINASE, ASAL; COMPND 5 EC: 4.3.2.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: BL21(DE3)PLYSS KEYWDS ARGININOSUCCINATE LYASE, CRYSTALLIN, E. COLI, FUMARASE, ASPARTASE, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BHAUMIK,M.K.KOSKI,U.BERGMAN,R.K.WIERENGA REVDAT 5 23-AUG-23 1TJ7 1 REMARK REVDAT 4 11-OCT-17 1TJ7 1 REMARK REVDAT 3 13-JUL-11 1TJ7 1 VERSN REVDAT 2 24-FEB-09 1TJ7 1 VERSN REVDAT 1 26-OCT-04 1TJ7 0 JRNL AUTH P.BHAUMIK,M.K.KOSKI,U.BERGMANN,R.K.WIERENGA JRNL TITL STRUCTURE DETERMINATION AND REFINEMENT AT 2.44 A RESOLUTION JRNL TITL 2 OF ARGININOSUCCINATE LYASE FROM ESCHERICHIA COLI. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 1964 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15502303 JRNL DOI 10.1107/S0907444904021912 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2021 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5559 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 331 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7012 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.341 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.141 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7147 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9667 ; 1.537 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 904 ; 5.603 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1091 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5398 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3509 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 376 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 258 ; 0.213 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 52 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4492 ; 0.546 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7158 ; 1.093 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2655 ; 2.170 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2509 ; 3.515 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TJ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.134 REMARK 200 MONOCHROMATOR : TRIANGULAR REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42164 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.37 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : 0.43700 REMARK 200 FOR SHELL : 6.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1K7W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM PHOSPHATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.08367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 170.16733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 127.62550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 212.70917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.54183 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.08367 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 170.16733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 212.70917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 127.62550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.54183 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 60.73450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -105.19524 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.54183 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 TRP B 4 REMARK 465 GLY B 5 REMARK 465 GLY B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD ARG A 293 O HOH A 740 2.00 REMARK 500 CB MET A 341 O HOH A 724 2.01 REMARK 500 O3 PO4 A 601 O4 PO4 B 602 2.04 REMARK 500 NE ARG A 293 O HOH A 740 2.05 REMARK 500 O2 GOL B 603 O HOH B 688 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 111 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 VAL A 150 CB - CA - C ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 178 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU A 190 CA - CB - CG ANGL. DEV. = 19.7 DEGREES REMARK 500 ASP A 324 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 330 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 432 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 28 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP B 68 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 83 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 148 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG B 178 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU B 190 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 ASP B 227 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 233 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 432 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 455 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 160 -84.25 -102.92 REMARK 500 LEU A 200 -20.30 179.45 REMARK 500 ALA A 204 45.67 -91.05 REMARK 500 GLU A 206 49.04 -84.14 REMARK 500 ALA A 316 -92.94 -104.40 REMARK 500 ARG B 72 74.25 -164.19 REMARK 500 ALA B 160 -155.86 -115.62 REMARK 500 ASP B 191 53.47 -69.98 REMARK 500 LEU B 200 -27.16 -174.82 REMARK 500 GLU B 206 36.03 -97.95 REMARK 500 ALA B 316 -60.52 -99.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 DBREF 1TJ7 A 1 457 UNP P11447 ARLY_ECOLI 1 457 DBREF 1TJ7 B 1 457 UNP P11447 ARLY_ECOLI 1 457 SEQRES 1 A 457 MET ALA LEU TRP GLY GLY ARG PHE THR GLN ALA ALA ASP SEQRES 2 A 457 GLN ARG PHE LYS GLN PHE ASN ASP SER LEU ARG PHE ASP SEQRES 3 A 457 TYR ARG LEU ALA GLU GLN ASP ILE VAL GLY SER VAL ALA SEQRES 4 A 457 TRP SER LYS ALA LEU VAL THR VAL GLY VAL LEU THR ALA SEQRES 5 A 457 GLU GLU GLN ALA GLN LEU GLU GLU ALA LEU ASN VAL LEU SEQRES 6 A 457 LEU GLU ASP VAL ARG ALA ARG PRO GLN GLN ILE LEU GLU SEQRES 7 A 457 SER ASP ALA GLU ASP ILE HIS SER TRP VAL GLU GLY LYS SEQRES 8 A 457 LEU ILE ASP LYS VAL GLY GLN LEU GLY LYS LYS LEU HIS SEQRES 9 A 457 THR GLY ARG SER ARG ASN ASP GLN VAL ALA THR ASP LEU SEQRES 10 A 457 LYS LEU TRP CYS LYS ASP THR VAL SER GLU LEU LEU THR SEQRES 11 A 457 ALA ASN ARG GLN LEU GLN SER ALA LEU VAL GLU THR ALA SEQRES 12 A 457 GLN ASN ASN GLN ASP ALA VAL MET PRO GLY TYR THR HIS SEQRES 13 A 457 LEU GLN ARG ALA GLN PRO VAL THR PHE ALA HIS TRP CYS SEQRES 14 A 457 LEU ALA TYR VAL GLU MET LEU ALA ARG ASP GLU SER ARG SEQRES 15 A 457 LEU GLN ASP ALA LEU LYS ARG LEU ASP VAL SER PRO LEU SEQRES 16 A 457 GLY CYS GLY ALA LEU ALA GLY THR ALA TYR GLU ILE ASP SEQRES 17 A 457 ARG GLU GLN LEU ALA GLY TRP LEU GLY PHE ALA SER ALA SEQRES 18 A 457 THR ARG ASN SER LEU ASP SER VAL SER ASP ARG ASP HIS SEQRES 19 A 457 VAL LEU GLU LEU LEU SER ALA ALA ALA ILE GLY MET VAL SEQRES 20 A 457 HIS LEU SER ARG PHE ALA GLU ASP LEU ILE PHE PHE ASN SEQRES 21 A 457 THR GLY GLU ALA GLY PHE VAL GLU LEU SER ASP ARG VAL SEQRES 22 A 457 THR SER GLY SER SER LEU MET PRO GLN LYS LYS ASN PRO SEQRES 23 A 457 ASP ALA LEU GLU LEU ILE ARG GLY LYS CYS GLY ARG VAL SEQRES 24 A 457 GLN GLY ALA LEU THR GLY MET MET MET THR LEU LYS GLY SEQRES 25 A 457 LEU PRO LEU ALA TYR ASN LYS ASP MET GLN GLU ASP LYS SEQRES 26 A 457 GLU GLY LEU PHE ASP ALA LEU ASP THR TRP LEU ASP CYS SEQRES 27 A 457 LEU HIS MET ALA ALA LEU VAL LEU ASP GLY ILE GLN VAL SEQRES 28 A 457 LYS ARG PRO ARG CYS GLN GLU ALA ALA GLN GLN GLY TYR SEQRES 29 A 457 ALA ASN ALA THR GLU LEU ALA ASP TYR LEU VAL ALA LYS SEQRES 30 A 457 GLY VAL PRO PHE ARG GLU ALA HIS HIS ILE VAL GLY GLU SEQRES 31 A 457 ALA VAL VAL GLU ALA ILE ARG GLN GLY LYS PRO LEU GLU SEQRES 32 A 457 ASP LEU PRO LEU SER GLU LEU GLN LYS PHE SER GLN VAL SEQRES 33 A 457 ILE ASP GLU ASP VAL TYR PRO ILE LEU SER LEU GLN SER SEQRES 34 A 457 CYS LEU ASP LYS ARG ALA ALA LYS GLY GLY VAL SER PRO SEQRES 35 A 457 GLN GLN VAL ALA GLN ALA ILE ALA PHE ALA GLN ALA ARG SEQRES 36 A 457 LEU GLY SEQRES 1 B 457 MET ALA LEU TRP GLY GLY ARG PHE THR GLN ALA ALA ASP SEQRES 2 B 457 GLN ARG PHE LYS GLN PHE ASN ASP SER LEU ARG PHE ASP SEQRES 3 B 457 TYR ARG LEU ALA GLU GLN ASP ILE VAL GLY SER VAL ALA SEQRES 4 B 457 TRP SER LYS ALA LEU VAL THR VAL GLY VAL LEU THR ALA SEQRES 5 B 457 GLU GLU GLN ALA GLN LEU GLU GLU ALA LEU ASN VAL LEU SEQRES 6 B 457 LEU GLU ASP VAL ARG ALA ARG PRO GLN GLN ILE LEU GLU SEQRES 7 B 457 SER ASP ALA GLU ASP ILE HIS SER TRP VAL GLU GLY LYS SEQRES 8 B 457 LEU ILE ASP LYS VAL GLY GLN LEU GLY LYS LYS LEU HIS SEQRES 9 B 457 THR GLY ARG SER ARG ASN ASP GLN VAL ALA THR ASP LEU SEQRES 10 B 457 LYS LEU TRP CYS LYS ASP THR VAL SER GLU LEU LEU THR SEQRES 11 B 457 ALA ASN ARG GLN LEU GLN SER ALA LEU VAL GLU THR ALA SEQRES 12 B 457 GLN ASN ASN GLN ASP ALA VAL MET PRO GLY TYR THR HIS SEQRES 13 B 457 LEU GLN ARG ALA GLN PRO VAL THR PHE ALA HIS TRP CYS SEQRES 14 B 457 LEU ALA TYR VAL GLU MET LEU ALA ARG ASP GLU SER ARG SEQRES 15 B 457 LEU GLN ASP ALA LEU LYS ARG LEU ASP VAL SER PRO LEU SEQRES 16 B 457 GLY CYS GLY ALA LEU ALA GLY THR ALA TYR GLU ILE ASP SEQRES 17 B 457 ARG GLU GLN LEU ALA GLY TRP LEU GLY PHE ALA SER ALA SEQRES 18 B 457 THR ARG ASN SER LEU ASP SER VAL SER ASP ARG ASP HIS SEQRES 19 B 457 VAL LEU GLU LEU LEU SER ALA ALA ALA ILE GLY MET VAL SEQRES 20 B 457 HIS LEU SER ARG PHE ALA GLU ASP LEU ILE PHE PHE ASN SEQRES 21 B 457 THR GLY GLU ALA GLY PHE VAL GLU LEU SER ASP ARG VAL SEQRES 22 B 457 THR SER GLY SER SER LEU MET PRO GLN LYS LYS ASN PRO SEQRES 23 B 457 ASP ALA LEU GLU LEU ILE ARG GLY LYS CYS GLY ARG VAL SEQRES 24 B 457 GLN GLY ALA LEU THR GLY MET MET MET THR LEU LYS GLY SEQRES 25 B 457 LEU PRO LEU ALA TYR ASN LYS ASP MET GLN GLU ASP LYS SEQRES 26 B 457 GLU GLY LEU PHE ASP ALA LEU ASP THR TRP LEU ASP CYS SEQRES 27 B 457 LEU HIS MET ALA ALA LEU VAL LEU ASP GLY ILE GLN VAL SEQRES 28 B 457 LYS ARG PRO ARG CYS GLN GLU ALA ALA GLN GLN GLY TYR SEQRES 29 B 457 ALA ASN ALA THR GLU LEU ALA ASP TYR LEU VAL ALA LYS SEQRES 30 B 457 GLY VAL PRO PHE ARG GLU ALA HIS HIS ILE VAL GLY GLU SEQRES 31 B 457 ALA VAL VAL GLU ALA ILE ARG GLN GLY LYS PRO LEU GLU SEQRES 32 B 457 ASP LEU PRO LEU SER GLU LEU GLN LYS PHE SER GLN VAL SEQRES 33 B 457 ILE ASP GLU ASP VAL TYR PRO ILE LEU SER LEU GLN SER SEQRES 34 B 457 CYS LEU ASP LYS ARG ALA ALA LYS GLY GLY VAL SER PRO SEQRES 35 B 457 GLN GLN VAL ALA GLN ALA ILE ALA PHE ALA GLN ALA ARG SEQRES 36 B 457 LEU GLY HET PO4 A 601 5 HET GOL A 602 6 HET GOL A 603 6 HET PO4 B 602 5 HET GOL B 603 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 8 HOH *249(H2 O) HELIX 1 1 ASP A 13 ASP A 21 1 9 HELIX 2 2 SER A 22 TYR A 27 1 6 HELIX 3 3 LEU A 29 VAL A 47 1 19 HELIX 4 4 THR A 51 ARG A 72 1 22 HELIX 5 5 PRO A 73 SER A 79 5 7 HELIX 6 6 ASP A 83 GLY A 97 1 15 HELIX 7 7 GLN A 98 LEU A 103 5 6 HELIX 8 8 SER A 108 ASN A 145 1 38 HELIX 9 9 PHE A 165 ASP A 191 1 27 HELIX 10 10 ASP A 208 GLY A 217 1 10 HELIX 11 11 ASN A 224 ASP A 231 1 8 HELIX 12 12 ARG A 232 ASN A 260 1 29 HELIX 13 13 SER A 270 THR A 274 5 5 HELIX 14 14 PRO A 286 LYS A 295 1 10 HELIX 15 15 LYS A 295 LYS A 311 1 17 HELIX 16 16 ASN A 318 GLN A 322 5 5 HELIX 17 17 GLU A 323 ASP A 347 1 25 HELIX 18 18 LYS A 352 GLN A 361 1 10 HELIX 19 19 ASN A 366 LYS A 377 1 12 HELIX 20 20 PRO A 380 GLY A 399 1 20 HELIX 21 21 PRO A 401 LEU A 405 5 5 HELIX 22 22 PRO A 406 GLN A 411 1 6 HELIX 23 23 ASP A 420 LEU A 425 1 6 HELIX 24 24 SER A 426 LYS A 433 1 8 HELIX 25 25 SER A 441 GLY A 457 1 17 HELIX 26 26 ARG B 7 ASP B 21 1 15 HELIX 27 27 SER B 22 TYR B 27 1 6 HELIX 28 28 LEU B 29 VAL B 47 1 19 HELIX 29 29 THR B 51 ARG B 72 1 22 HELIX 30 30 PRO B 73 SER B 79 5 7 HELIX 31 31 ASP B 83 GLY B 97 1 15 HELIX 32 32 GLN B 98 LEU B 103 1 6 HELIX 33 33 SER B 108 ASN B 146 1 39 HELIX 34 34 PHE B 165 ASP B 191 1 27 HELIX 35 35 ASP B 208 GLY B 217 1 10 HELIX 36 36 ASN B 224 ASP B 231 1 8 HELIX 37 37 ARG B 232 ASN B 260 1 29 HELIX 38 38 SER B 270 THR B 274 5 5 HELIX 39 39 PRO B 286 LYS B 295 1 10 HELIX 40 40 LYS B 295 LYS B 311 1 17 HELIX 41 41 ASN B 318 ASP B 324 5 7 HELIX 42 42 LYS B 325 ILE B 349 1 25 HELIX 43 43 LYS B 352 GLN B 362 1 11 HELIX 44 44 ALA B 365 LYS B 377 1 13 HELIX 45 45 PRO B 380 GLY B 399 1 20 HELIX 46 46 PRO B 401 LEU B 405 5 5 HELIX 47 47 PRO B 406 GLN B 411 1 6 HELIX 48 48 ASP B 420 LEU B 425 1 6 HELIX 49 49 SER B 426 ARG B 434 1 9 HELIX 50 50 SER B 441 GLY B 457 1 17 SHEET 1 A 2 VAL A 150 THR A 155 0 SHEET 2 A 2 GLN A 158 THR A 164 -1 O ALA A 160 N GLY A 153 SHEET 1 B 2 VAL A 267 GLU A 268 0 SHEET 2 B 2 GLN A 350 VAL A 351 -1 O GLN A 350 N GLU A 268 SHEET 1 C 2 VAL B 150 THR B 155 0 SHEET 2 C 2 GLN B 158 THR B 164 -1 O ALA B 160 N GLY B 153 SHEET 1 D 2 VAL B 192 SER B 193 0 SHEET 2 D 2 SER B 220 ALA B 221 1 O SER B 220 N SER B 193 SHEET 1 E 2 VAL B 267 GLU B 268 0 SHEET 2 E 2 GLN B 350 VAL B 351 -1 O GLN B 350 N GLU B 268 CISPEP 1 LEU A 315 ALA A 316 0 -7.63 CISPEP 2 LEU B 315 ALA B 316 0 -1.51 SITE 1 AC1 6 SER A 108 ARG A 109 ASN A 110 SER B 277 SITE 2 AC1 6 SER B 278 PO4 B 602 SITE 1 AC2 8 ASN A 110 THR A 155 HIS A 156 PO4 A 601 SITE 2 AC2 8 SER B 277 MET B 280 LYS B 283 ASN B 285 SITE 1 AC3 8 GLY B 153 TYR B 154 TRP B 168 ASP B 255 SITE 2 AC3 8 PHE B 259 LEU B 315 ALA B 316 HOH B 688 SITE 1 AC4 4 TYR A 205 ASP A 372 LYS A 433 HOH A 682 SITE 1 AC5 11 GLY A 153 TYR A 154 TRP A 168 LEU A 200 SITE 2 AC5 11 LEU A 226 ASP A 255 PHE A 259 PRO A 314 SITE 3 AC5 11 LEU A 315 ALA A 316 HOH A 714 CRYST1 121.469 121.469 255.251 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008233 0.004753 0.000000 0.00000 SCALE2 0.000000 0.009506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003918 0.00000