data_1TJQ # _entry.id 1TJQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1TJQ RCSB RCSB022696 WWPDB D_1000022696 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2009-03-10 _pdbx_database_PDB_obs_spr.pdb_id 3G8F _pdbx_database_PDB_obs_spr.replace_pdb_id 1TJQ _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1TJQ _pdbx_database_status.recvd_initial_deposition_date 2004-06-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Singh, N.' 1 'Kaur, P.' 2 'Somvanshi, R.K.' 3 'Perbandt, M.' 4 'Betzel, C.' 5 'Dey, S.' 6 'Sharma, S.' 7 'Singh, T.P.' 8 # _citation.id primary _citation.title ;Crystal Structure of the complex formed between a group II phospholipase A2 and designed peptide inhibitor carbobenzoxy-dehydro-Val-Ala-Arg-Ser at 1.2 A resolution ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Singh, N.' 1 primary 'Kaur, P.' 2 primary 'SOMVANSHI, R.K.' 3 primary 'Perbandt, M.' 4 primary 'Betzel, C.' 5 primary 'Dey, S.' 6 primary 'Sharma, S.' 7 primary 'Singh, T.P.' 8 # _cell.entry_id 1TJQ _cell.length_a 52.561 _cell.length_b 52.561 _cell.length_c 47.883 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1TJQ _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Phospholipase A2 VRV-PL-VIIIa' 13629.767 1 3.1.1.4 ? ? ? 2 polymer syn 'synthetic peptide' 585.073 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 4 non-polymer syn METHANOL 32.042 2 ? ? ? ? 5 water nat water 18.015 194 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Phosphatidylcholine 2-acylhydrolase, DPLA2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SLLEFGKMILEETGKLAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCYGNLPDCNPKSDRYKYKRVNGAIVCEKGTS CENRICECDKAAAICFRQNLNTYSKKYMLYPDFLCKGELKC ; ;SLLEFGKMILEETGKLAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCYGNLPDCNPKSDRYKYKRVNGAIVCEKGTS CENRICECDKAAAICFRQNLNTYSKKYMLYPDFLCKGELKC ; A ? 2 'polypeptide(L)' no yes '(PHQ)VARS' XVARS B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 LEU n 1 4 GLU n 1 5 PHE n 1 6 GLY n 1 7 LYS n 1 8 MET n 1 9 ILE n 1 10 LEU n 1 11 GLU n 1 12 GLU n 1 13 THR n 1 14 GLY n 1 15 LYS n 1 16 LEU n 1 17 ALA n 1 18 ILE n 1 19 PRO n 1 20 SER n 1 21 TYR n 1 22 SER n 1 23 SER n 1 24 TYR n 1 25 GLY n 1 26 CYS n 1 27 TYR n 1 28 CYS n 1 29 GLY n 1 30 TRP n 1 31 GLY n 1 32 GLY n 1 33 LYS n 1 34 GLY n 1 35 THR n 1 36 PRO n 1 37 LYS n 1 38 ASP n 1 39 ALA n 1 40 THR n 1 41 ASP n 1 42 ARG n 1 43 CYS n 1 44 CYS n 1 45 PHE n 1 46 VAL n 1 47 HIS n 1 48 ASP n 1 49 CYS n 1 50 CYS n 1 51 TYR n 1 52 GLY n 1 53 ASN n 1 54 LEU n 1 55 PRO n 1 56 ASP n 1 57 CYS n 1 58 ASN n 1 59 PRO n 1 60 LYS n 1 61 SER n 1 62 ASP n 1 63 ARG n 1 64 TYR n 1 65 LYS n 1 66 TYR n 1 67 LYS n 1 68 ARG n 1 69 VAL n 1 70 ASN n 1 71 GLY n 1 72 ALA n 1 73 ILE n 1 74 VAL n 1 75 CYS n 1 76 GLU n 1 77 LYS n 1 78 GLY n 1 79 THR n 1 80 SER n 1 81 CYS n 1 82 GLU n 1 83 ASN n 1 84 ARG n 1 85 ILE n 1 86 CYS n 1 87 GLU n 1 88 CYS n 1 89 ASP n 1 90 LYS n 1 91 ALA n 1 92 ALA n 1 93 ALA n 1 94 ILE n 1 95 CYS n 1 96 PHE n 1 97 ARG n 1 98 GLN n 1 99 ASN n 1 100 LEU n 1 101 ASN n 1 102 THR n 1 103 TYR n 1 104 SER n 1 105 LYS n 1 106 LYS n 1 107 TYR n 1 108 MET n 1 109 LEU n 1 110 TYR n 1 111 PRO n 1 112 ASP n 1 113 PHE n 1 114 LEU n 1 115 CYS n 1 116 LYS n 1 117 GLY n 1 118 GLU n 1 119 LEU n 1 120 LYS n 1 121 CYS n 2 1 PHQ n 2 2 VAL n 2 3 ALA n 2 4 ARG n 2 5 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Daboia russellii pulchella' _entity_src_nat.pdbx_ncbi_taxonomy_id 97228 _entity_src_nat.genus Daboia _entity_src_nat.species 'Daboia russellii' _entity_src_nat.strain pulchella _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion 'snake venom' _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'the peptide was chemically synthesized' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PA28_DABRP _struct_ref.pdbx_db_accession P59071 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SLLEFGKMILEETGKLAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCYGNLPDCNPKSDRYKYKRVNGAIVCEKGTS CENRICECDKAAAICFRQNLNTYSKKYMLYPDFLCKGELKC ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1TJQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 111 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P59071 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 121 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 121 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MOH non-polymer . METHANOL ? 'C H4 O' 32.042 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PHQ non-polymer . 'benzyl chlorocarbonate' ? 'C8 H7 Cl O2' 170.593 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1TJQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 50.0 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '0.2M AMMONIUM SULPHATE, 30% PEG, CaCl2, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 200 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-05-05 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.806 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, Hamburg' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.806 # _reflns.entry_id 1TJQ _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.2 _reflns.d_resolution_low 30.0 _reflns.number_all ? _reflns.number_obs 35175 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.078 _reflns.pdbx_netI_over_sigmaI 20.5 _reflns.B_iso_Wilson_estimate 11.8 _reflns.pdbx_redundancy 5.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.2 _reflns_shell.d_res_low 1.27 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.487 _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1790 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1TJQ _refine.ls_number_reflns_obs 35175 _refine.ls_number_reflns_all 35175 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.36 _refine.ls_d_res_high 1.25 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.18714 _refine.ls_R_factor_all 0.18714 _refine.ls_R_factor_R_work 0.18659 _refine.ls_R_factor_R_free 0.20965 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 2.6 _refine.ls_number_reflns_R_free 921 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.B_iso_mean 12.965 _refine.aniso_B[1][1] 0.05 _refine.aniso_B[2][2] 0.05 _refine.aniso_B[3][3] -0.10 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 1skg' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.047 _refine.pdbx_overall_ESU_R_Free 0.049 _refine.overall_SU_ML 0.041 _refine.overall_SU_B 0.917 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1TJQ _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.23 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 984 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 198 _refine_hist.number_atoms_total 1197 _refine_hist.d_res_high 1.25 _refine_hist.d_res_low 29.36 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 1015 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 857 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.856 2.012 ? 1352 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.037 3.000 ? 2019 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.099 3.000 ? 116 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.209 15.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.137 0.200 ? 137 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1062 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.005 0.020 ? 203 'X-RAY DIFFRACTION' ? r_nbd_refined 0.435 0.300 ? 283 'X-RAY DIFFRACTION' ? r_nbd_other 0.224 0.300 ? 814 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.182 0.500 ? 135 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.148 0.500 ? 3 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.483 0.300 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.378 0.300 ? 54 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.476 0.500 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.660 1.500 ? 614 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.227 2.000 ? 965 'X-RAY DIFFRACTION' ? r_scbond_it 1.486 3.000 ? 401 'X-RAY DIFFRACTION' ? r_scangle_it 2.329 4.500 ? 387 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.251 _refine_ls_shell.d_res_low 1.283 _refine_ls_shell.number_reflns_R_work 2587 _refine_ls_shell.R_factor_R_work 0.235 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.231 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 74 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1TJQ _struct.title ;Crystal Structure of the complex formed between a group II phospholipase A2 and designed peptide inhibitor carbobenzoxy-dehydro-Val-Ala-Arg-Ser at 1.2 A resolution ; _struct.pdbx_descriptor 'Phospholipase A2 VRV-PL-VIIIa (E.C.3.1.1.4), synthetic peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1TJQ _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'phospholipase A2, crystal structre, inhibitor, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? GLY A 14 ? SER A 1 GLY A 14 1 ? 14 HELX_P HELX_P2 2 LEU A 16 ? TYR A 21 ? LEU A 17 TYR A 22 1 ? 6 HELX_P HELX_P3 3 ASP A 38 ? ASN A 53 ? ASP A 39 ASN A 54 1 ? 16 HELX_P HELX_P4 4 THR A 79 ? ASN A 99 ? THR A 89 ASN A 109 1 ? 21 HELX_P HELX_P5 5 LEU A 100 ? TYR A 103 ? LEU A 110 TYR A 113 5 ? 4 HELX_P HELX_P6 6 SER A 104 ? MET A 108 ? SER A 114 MET A 118 5 ? 5 HELX_P HELX_P7 7 PRO A 111 ? CYS A 115 ? PRO A 121 CYS A 126 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 27 A CYS 126 1_555 ? ? ? ? ? ? ? 1.806 ? disulf2 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 29 A CYS 45 1_555 ? ? ? ? ? ? ? 2.044 ? disulf3 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 44 A CYS 105 1_555 ? ? ? ? ? ? ? 2.048 ? disulf4 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 121 SG ? ? A CYS 50 A CYS 133 1_555 ? ? ? ? ? ? ? 2.030 ? disulf5 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 88 SG ? ? A CYS 51 A CYS 98 1_555 ? ? ? ? ? ? ? 2.057 ? disulf6 disulf ? ? A CYS 57 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 61 A CYS 91 1_555 ? ? ? ? ? ? ? 2.051 ? disulf7 disulf ? ? A CYS 75 SG ? ? ? 1_555 A CYS 86 SG ? ? A CYS 84 A CYS 96 1_555 ? ? ? ? ? ? ? 2.055 ? covale1 covale ? ? B PHQ 1 C1 ? ? ? 1_555 B VAL 2 N ? ? B PHQ 1 B VAL 2 1_555 ? ? ? ? ? ? ? 1.451 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 18 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 19 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 19 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 20 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 5.30 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 66 ? VAL A 69 ? TYR A 75 VAL A 78 A 2 ALA A 72 ? CYS A 75 ? ALA A 81 CYS A 84 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 67 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 76 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 74 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 83 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 401' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 402' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 403' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MOH A 301' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MOH A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ARG A 42 ? ARG A 43 . ? 1_555 ? 2 AC1 3 HOH H . ? HOH A 487 . ? 1_555 ? 3 AC1 3 HOH H . ? HOH A 497 . ? 1_555 ? 4 AC2 7 GLU A 4 ? GLU A 4 . ? 1_555 ? 5 AC2 7 ARG A 63 ? ARG A 72 . ? 1_555 ? 6 AC2 7 LYS A 65 ? LYS A 74 . ? 1_555 ? 7 AC2 7 HOH H . ? HOH A 464 . ? 1_555 ? 8 AC2 7 HOH H . ? HOH A 473 . ? 3_654 ? 9 AC2 7 HOH H . ? HOH A 478 . ? 1_555 ? 10 AC2 7 HOH H . ? HOH A 499 . ? 1_555 ? 11 AC3 3 SER A 104 ? SER A 114 . ? 1_555 ? 12 AC3 3 LYS A 105 ? LYS A 115 . ? 1_555 ? 13 AC3 3 LYS A 120 ? LYS A 131 . ? 4_465 ? 14 AC4 5 LYS A 77 ? LYS A 86 . ? 1_555 ? 15 AC4 5 GLY A 78 ? GLY A 88 . ? 1_555 ? 16 AC4 5 ASN A 83 ? ASN A 93 . ? 1_555 ? 17 AC4 5 MOH G . ? MOH A 302 . ? 3_654 ? 18 AC4 5 HOH H . ? HOH A 431 . ? 1_555 ? 19 AC5 5 LYS A 90 ? LYS A 100 . ? 1_555 ? 20 AC5 5 MOH F . ? MOH A 301 . ? 4_565 ? 21 AC5 5 HOH H . ? HOH A 431 . ? 4_565 ? 22 AC5 5 HOH H . ? HOH A 475 . ? 1_555 ? 23 AC5 5 HOH H . ? HOH A 510 . ? 1_555 ? # _database_PDB_matrix.entry_id 1TJQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1TJQ _atom_sites.fract_transf_matrix[1][1] 0.019026 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019026 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020884 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 LYS 15 16 16 LYS LYS A . n A 1 16 LEU 16 17 17 LEU LEU A . n A 1 17 ALA 17 18 18 ALA ALA A . n A 1 18 ILE 18 19 19 ILE ILE A . n A 1 19 PRO 19 20 20 PRO PRO A . n A 1 20 SER 20 21 21 SER SER A . n A 1 21 TYR 21 22 22 TYR TYR A . n A 1 22 SER 22 23 23 SER SER A . n A 1 23 SER 23 24 24 SER SER A . n A 1 24 TYR 24 25 25 TYR TYR A . n A 1 25 GLY 25 26 26 GLY GLY A . n A 1 26 CYS 26 27 27 CYS CYS A . n A 1 27 TYR 27 28 28 TYR TYR A . n A 1 28 CYS 28 29 29 CYS CYS A . n A 1 29 GLY 29 30 30 GLY GLY A . n A 1 30 TRP 30 31 31 TRP TRP A . n A 1 31 GLY 31 32 32 GLY GLY A . n A 1 32 GLY 32 33 33 GLY GLY A . n A 1 33 LYS 33 34 34 LYS LYS A . n A 1 34 GLY 34 35 35 GLY GLY A . n A 1 35 THR 35 36 36 THR THR A . n A 1 36 PRO 36 37 37 PRO PRO A . n A 1 37 LYS 37 38 38 LYS LYS A . n A 1 38 ASP 38 39 39 ASP ASP A . n A 1 39 ALA 39 40 40 ALA ALA A . n A 1 40 THR 40 41 41 THR THR A . n A 1 41 ASP 41 42 42 ASP ASP A . n A 1 42 ARG 42 43 43 ARG ARG A . n A 1 43 CYS 43 44 44 CYS CYS A . n A 1 44 CYS 44 45 45 CYS CYS A . n A 1 45 PHE 45 46 46 PHE PHE A . n A 1 46 VAL 46 47 47 VAL VAL A . n A 1 47 HIS 47 48 48 HIS HIS A . n A 1 48 ASP 48 49 49 ASP ASP A . n A 1 49 CYS 49 50 50 CYS CYS A . n A 1 50 CYS 50 51 51 CYS CYS A . n A 1 51 TYR 51 52 52 TYR TYR A . n A 1 52 GLY 52 53 53 GLY GLY A . n A 1 53 ASN 53 54 54 ASN ASN A . n A 1 54 LEU 54 55 55 LEU LEU A . n A 1 55 PRO 55 56 56 PRO PRO A . n A 1 56 ASP 56 59 59 ASP ASP A . n A 1 57 CYS 57 61 61 CYS CYS A . n A 1 58 ASN 58 67 67 ASN ASN A . n A 1 59 PRO 59 68 68 PRO PRO A . n A 1 60 LYS 60 69 69 LYS LYS A . n A 1 61 SER 61 70 70 SER SER A . n A 1 62 ASP 62 71 71 ASP ASP A . n A 1 63 ARG 63 72 72 ARG ARG A . n A 1 64 TYR 64 73 73 TYR TYR A . n A 1 65 LYS 65 74 74 LYS LYS A . n A 1 66 TYR 66 75 75 TYR TYR A . n A 1 67 LYS 67 76 76 LYS LYS A . n A 1 68 ARG 68 77 77 ARG ARG A . n A 1 69 VAL 69 78 78 VAL VAL A . n A 1 70 ASN 70 79 79 ASN ASN A . n A 1 71 GLY 71 80 80 GLY GLY A . n A 1 72 ALA 72 81 81 ALA ALA A . n A 1 73 ILE 73 82 82 ILE ILE A . n A 1 74 VAL 74 83 83 VAL VAL A . n A 1 75 CYS 75 84 84 CYS CYS A . n A 1 76 GLU 76 85 85 GLU GLU A . n A 1 77 LYS 77 86 86 LYS LYS A . n A 1 78 GLY 78 88 88 GLY GLY A . n A 1 79 THR 79 89 89 THR THR A . n A 1 80 SER 80 90 90 SER SER A . n A 1 81 CYS 81 91 91 CYS CYS A . n A 1 82 GLU 82 92 92 GLU GLU A . n A 1 83 ASN 83 93 93 ASN ASN A . n A 1 84 ARG 84 94 94 ARG ARG A . n A 1 85 ILE 85 95 95 ILE ILE A . n A 1 86 CYS 86 96 96 CYS CYS A . n A 1 87 GLU 87 97 97 GLU GLU A . n A 1 88 CYS 88 98 98 CYS CYS A . n A 1 89 ASP 89 99 99 ASP ASP A . n A 1 90 LYS 90 100 100 LYS LYS A . n A 1 91 ALA 91 101 101 ALA ALA A . n A 1 92 ALA 92 102 102 ALA ALA A . n A 1 93 ALA 93 103 103 ALA ALA A . n A 1 94 ILE 94 104 104 ILE ILE A . n A 1 95 CYS 95 105 105 CYS CYS A . n A 1 96 PHE 96 106 106 PHE PHE A . n A 1 97 ARG 97 107 107 ARG ARG A . n A 1 98 GLN 98 108 108 GLN GLN A . n A 1 99 ASN 99 109 109 ASN ASN A . n A 1 100 LEU 100 110 110 LEU LEU A . n A 1 101 ASN 101 111 111 ASN ASN A . n A 1 102 THR 102 112 112 THR THR A . n A 1 103 TYR 103 113 113 TYR TYR A . n A 1 104 SER 104 114 114 SER SER A . n A 1 105 LYS 105 115 115 LYS LYS A . n A 1 106 LYS 106 116 116 LYS LYS A . n A 1 107 TYR 107 117 117 TYR TYR A . n A 1 108 MET 108 118 118 MET MET A . n A 1 109 LEU 109 119 119 LEU LEU A . n A 1 110 TYR 110 120 120 TYR TYR A . n A 1 111 PRO 111 121 121 PRO PRO A . n A 1 112 ASP 112 122 122 ASP ASP A . n A 1 113 PHE 113 124 124 PHE PHE A . n A 1 114 LEU 114 125 125 LEU LEU A . n A 1 115 CYS 115 126 126 CYS CYS A . n A 1 116 LYS 116 127 127 LYS LYS A . n A 1 117 GLY 117 128 128 GLY GLY A . n A 1 118 GLU 118 129 129 GLU GLU A . n A 1 119 LEU 119 130 130 LEU LEU A . n A 1 120 LYS 120 131 131 LYS LYS A . n A 1 121 CYS 121 133 133 CYS CYS A . n B 2 1 PHQ 1 1 1 PHQ CBZ B . n B 2 2 VAL 2 2 2 VAL VAL B . n B 2 3 ALA 3 3 3 ALA ALA B . n B 2 4 ARG 4 4 4 ARG ARG B . n B 2 5 SER 5 5 5 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 401 401 SO4 SO4 A . D 3 SO4 1 402 402 SO4 SO4 A . E 3 SO4 1 403 403 SO4 SO4 A . F 4 MOH 1 301 301 MOH MOH A . G 4 MOH 1 302 302 MOH MOH A . H 5 HOH 1 404 1 HOH HOH A . H 5 HOH 2 405 2 HOH HOH A . H 5 HOH 3 406 3 HOH HOH A . H 5 HOH 4 407 4 HOH HOH A . H 5 HOH 5 408 5 HOH HOH A . H 5 HOH 6 409 6 HOH HOH A . H 5 HOH 7 410 7 HOH HOH A . H 5 HOH 8 411 8 HOH HOH A . H 5 HOH 9 412 9 HOH HOH A . H 5 HOH 10 413 10 HOH HOH A . H 5 HOH 11 414 11 HOH HOH A . H 5 HOH 12 415 12 HOH HOH A . H 5 HOH 13 416 13 HOH HOH A . H 5 HOH 14 417 14 HOH HOH A . H 5 HOH 15 418 15 HOH HOH A . H 5 HOH 16 419 16 HOH HOH A . H 5 HOH 17 420 17 HOH HOH A . H 5 HOH 18 421 18 HOH HOH A . H 5 HOH 19 422 19 HOH HOH A . H 5 HOH 20 423 20 HOH HOH A . H 5 HOH 21 424 21 HOH HOH A . H 5 HOH 22 425 22 HOH HOH A . H 5 HOH 23 426 23 HOH HOH A . H 5 HOH 24 427 24 HOH HOH A . H 5 HOH 25 428 25 HOH HOH A . H 5 HOH 26 429 26 HOH HOH A . H 5 HOH 27 430 27 HOH HOH A . H 5 HOH 28 431 28 HOH HOH A . H 5 HOH 29 432 29 HOH HOH A . H 5 HOH 30 433 30 HOH HOH A . H 5 HOH 31 434 31 HOH HOH A . H 5 HOH 32 435 32 HOH HOH A . H 5 HOH 33 436 33 HOH HOH A . H 5 HOH 34 437 34 HOH HOH A . H 5 HOH 35 438 35 HOH HOH A . H 5 HOH 36 439 36 HOH HOH A . H 5 HOH 37 440 37 HOH HOH A . H 5 HOH 38 441 38 HOH HOH A . H 5 HOH 39 442 39 HOH HOH A . H 5 HOH 40 443 40 HOH HOH A . H 5 HOH 41 444 41 HOH HOH A . H 5 HOH 42 445 42 HOH HOH A . H 5 HOH 43 446 43 HOH HOH A . H 5 HOH 44 447 44 HOH HOH A . H 5 HOH 45 448 45 HOH HOH A . H 5 HOH 46 449 46 HOH HOH A . H 5 HOH 47 450 47 HOH HOH A . H 5 HOH 48 451 48 HOH HOH A . H 5 HOH 49 452 49 HOH HOH A . H 5 HOH 50 453 50 HOH HOH A . H 5 HOH 51 454 51 HOH HOH A . H 5 HOH 52 455 52 HOH HOH A . H 5 HOH 53 456 53 HOH HOH A . H 5 HOH 54 457 54 HOH HOH A . H 5 HOH 55 458 55 HOH HOH A . H 5 HOH 56 459 56 HOH HOH A . H 5 HOH 57 460 57 HOH HOH A . H 5 HOH 58 461 58 HOH HOH A . H 5 HOH 59 462 59 HOH HOH A . H 5 HOH 60 463 60 HOH HOH A . H 5 HOH 61 464 61 HOH HOH A . H 5 HOH 62 465 62 HOH HOH A . H 5 HOH 63 466 63 HOH HOH A . H 5 HOH 64 467 64 HOH HOH A . H 5 HOH 65 468 65 HOH HOH A . H 5 HOH 66 469 66 HOH HOH A . H 5 HOH 67 470 67 HOH HOH A . H 5 HOH 68 471 68 HOH HOH A . H 5 HOH 69 472 69 HOH HOH A . H 5 HOH 70 473 70 HOH HOH A . H 5 HOH 71 474 71 HOH HOH A . H 5 HOH 72 475 72 HOH HOH A . H 5 HOH 73 476 73 HOH HOH A . H 5 HOH 74 477 74 HOH HOH A . H 5 HOH 75 478 75 HOH HOH A . H 5 HOH 76 479 76 HOH HOH A . H 5 HOH 77 480 77 HOH HOH A . H 5 HOH 78 481 78 HOH HOH A . H 5 HOH 79 482 79 HOH HOH A . H 5 HOH 80 483 80 HOH HOH A . H 5 HOH 81 484 81 HOH HOH A . H 5 HOH 82 485 82 HOH HOH A . H 5 HOH 83 486 83 HOH HOH A . H 5 HOH 84 487 84 HOH HOH A . H 5 HOH 85 488 85 HOH HOH A . H 5 HOH 86 489 86 HOH HOH A . H 5 HOH 87 490 87 HOH HOH A . H 5 HOH 88 491 88 HOH HOH A . H 5 HOH 89 492 89 HOH HOH A . H 5 HOH 90 493 90 HOH HOH A . H 5 HOH 91 494 91 HOH HOH A . H 5 HOH 92 495 92 HOH HOH A . H 5 HOH 93 496 93 HOH HOH A . H 5 HOH 94 497 94 HOH HOH A . H 5 HOH 95 498 96 HOH HOH A . H 5 HOH 96 499 97 HOH HOH A . H 5 HOH 97 500 98 HOH HOH A . H 5 HOH 98 501 99 HOH HOH A . H 5 HOH 99 502 100 HOH HOH A . H 5 HOH 100 503 101 HOH HOH A . H 5 HOH 101 504 102 HOH HOH A . H 5 HOH 102 505 103 HOH HOH A . H 5 HOH 103 506 104 HOH HOH A . H 5 HOH 104 507 105 HOH HOH A . H 5 HOH 105 508 106 HOH HOH A . H 5 HOH 106 509 107 HOH HOH A . H 5 HOH 107 510 108 HOH HOH A . H 5 HOH 108 511 109 HOH HOH A . H 5 HOH 109 512 110 HOH HOH A . H 5 HOH 110 513 111 HOH HOH A . H 5 HOH 111 514 112 HOH HOH A . H 5 HOH 112 515 113 HOH HOH A . H 5 HOH 113 516 114 HOH HOH A . H 5 HOH 114 517 115 HOH HOH A . H 5 HOH 115 518 116 HOH HOH A . H 5 HOH 116 519 117 HOH HOH A . H 5 HOH 117 520 118 HOH HOH A . H 5 HOH 118 521 119 HOH HOH A . H 5 HOH 119 522 121 HOH HOH A . H 5 HOH 120 523 123 HOH HOH A . H 5 HOH 121 524 124 HOH HOH A . H 5 HOH 122 525 126 HOH HOH A . H 5 HOH 123 526 127 HOH HOH A . H 5 HOH 124 527 128 HOH HOH A . H 5 HOH 125 528 129 HOH HOH A . H 5 HOH 126 529 130 HOH HOH A . H 5 HOH 127 530 131 HOH HOH A . H 5 HOH 128 531 132 HOH HOH A . H 5 HOH 129 532 133 HOH HOH A . H 5 HOH 130 533 134 HOH HOH A . H 5 HOH 131 534 135 HOH HOH A . H 5 HOH 132 535 136 HOH HOH A . H 5 HOH 133 536 137 HOH HOH A . H 5 HOH 134 537 138 HOH HOH A . H 5 HOH 135 538 139 HOH HOH A . H 5 HOH 136 539 140 HOH HOH A . H 5 HOH 137 540 141 HOH HOH A . H 5 HOH 138 541 142 HOH HOH A . H 5 HOH 139 542 143 HOH HOH A . H 5 HOH 140 543 144 HOH HOH A . H 5 HOH 141 544 145 HOH HOH A . H 5 HOH 142 545 146 HOH HOH A . H 5 HOH 143 546 148 HOH HOH A . H 5 HOH 144 547 151 HOH HOH A . H 5 HOH 145 548 152 HOH HOH A . H 5 HOH 146 549 153 HOH HOH A . H 5 HOH 147 550 154 HOH HOH A . H 5 HOH 148 551 155 HOH HOH A . H 5 HOH 149 552 156 HOH HOH A . H 5 HOH 150 553 157 HOH HOH A . H 5 HOH 151 554 158 HOH HOH A . H 5 HOH 152 555 159 HOH HOH A . H 5 HOH 153 556 160 HOH HOH A . H 5 HOH 154 557 161 HOH HOH A . H 5 HOH 155 558 162 HOH HOH A . H 5 HOH 156 559 164 HOH HOH A . H 5 HOH 157 560 165 HOH HOH A . H 5 HOH 158 561 166 HOH HOH A . H 5 HOH 159 562 167 HOH HOH A . H 5 HOH 160 563 168 HOH HOH A . H 5 HOH 161 564 169 HOH HOH A . H 5 HOH 162 565 170 HOH HOH A . H 5 HOH 163 566 172 HOH HOH A . H 5 HOH 164 567 173 HOH HOH A . H 5 HOH 165 568 174 HOH HOH A . H 5 HOH 166 569 175 HOH HOH A . H 5 HOH 167 570 176 HOH HOH A . H 5 HOH 168 571 178 HOH HOH A . H 5 HOH 169 572 179 HOH HOH A . H 5 HOH 170 573 180 HOH HOH A . H 5 HOH 171 574 181 HOH HOH A . H 5 HOH 172 575 182 HOH HOH A . H 5 HOH 173 576 183 HOH HOH A . H 5 HOH 174 577 184 HOH HOH A . H 5 HOH 175 578 185 HOH HOH A . H 5 HOH 176 579 186 HOH HOH A . H 5 HOH 177 580 187 HOH HOH A . H 5 HOH 178 581 188 HOH HOH A . H 5 HOH 179 582 189 HOH HOH A . H 5 HOH 180 583 190 HOH HOH A . H 5 HOH 181 584 191 HOH HOH A . H 5 HOH 182 585 193 HOH HOH A . H 5 HOH 183 586 194 HOH HOH A . H 5 HOH 184 587 195 HOH HOH A . H 5 HOH 185 588 196 HOH HOH A . H 5 HOH 186 589 197 HOH HOH A . H 5 HOH 187 590 199 HOH HOH A . H 5 HOH 188 591 201 HOH HOH A . I 5 HOH 1 120 120 HOH HOH B . I 5 HOH 2 122 122 HOH HOH B . I 5 HOH 3 150 150 HOH HOH B . I 5 HOH 4 163 163 HOH HOH B . I 5 HOH 5 177 177 HOH HOH B . I 5 HOH 6 200 200 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-06-22 2 'Structure model' 1 1 2009-03-10 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 N _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 ARG _pdbx_validate_rmsd_bond.auth_seq_id_1 4 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CA _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 ARG _pdbx_validate_rmsd_bond.auth_seq_id_2 4 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.667 _pdbx_validate_rmsd_bond.bond_target_value 1.459 _pdbx_validate_rmsd_bond.bond_deviation 0.208 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.020 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A TRP 31 ? ? CB A TRP 31 ? ? CG A TRP 31 ? ? 125.47 113.70 11.77 1.90 N 2 1 CA B VAL 2 ? ? CB B VAL 2 ? ? CG1 B VAL 2 ? ? 121.09 110.90 10.19 1.50 N 3 1 NE B ARG 4 ? ? CZ B ARG 4 ? ? NH1 B ARG 4 ? ? 114.27 120.30 -6.03 0.50 N 4 1 NE B ARG 4 ? ? CZ B ARG 4 ? ? NH2 B ARG 4 ? ? 126.32 120.30 6.02 0.50 N 5 1 N B ARG 4 ? ? CA B ARG 4 ? ? C B ARG 4 ? ? 128.84 111.00 17.84 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 24 ? ? -147.10 30.87 2 1 TRP A 31 ? ? -167.53 48.15 3 1 ALA B 3 ? ? 151.68 178.86 4 1 ARG B 4 ? ? 158.95 -71.56 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ALA _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 3 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ARG _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 4 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 148.02 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 4 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.072 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 METHANOL MOH 5 water HOH #