data_1TK1 # _entry.id 1TK1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1TK1 RCSB RCSB022706 WWPDB D_1000022706 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1TK1 _pdbx_database_status.recvd_initial_deposition_date 2004-06-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Phillips, J.D.' 1 'Whitby, F.G.' 2 'Warby, C.A.' 3 'Labbe, P.' 4 'Yang, C.' 5 'Pflugrath, J.W.' 6 'Ferrara, J.D.' 7 'Robinson, H.' 8 'Kushner, J.P.' 9 'Hill, C.P.' 10 # _citation.id primary _citation.title 'Crystal Structure of the Oxygen-dependant Coproporphyrinogen Oxidase (Hem13p) of Saccharomyces cerevisiae' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 279 _citation.page_first 38960 _citation.page_last 38968 _citation.year 2004 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15194705 _citation.pdbx_database_id_DOI 10.1074/jbc.M406050200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Phillips, J.D.' 1 primary 'Whitby, F.G.' 2 primary 'Warby, C.A.' 3 primary 'Labbe, P.' 4 primary 'Yang, C.' 5 primary 'Pflugrath, J.W.' 6 primary 'Ferrara, J.D.' 7 primary 'Robinson, H.' 8 primary 'Kushner, J.P.' 9 primary 'Hill, C.P.' 10 # _cell.entry_id 1TK1 _cell.length_a 70.850 _cell.length_b 70.850 _cell.length_c 114.543 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TK1 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Coproporphyrinogen III oxidase' 29935.641 1 1.3.3.3 ? 'truncated odCPO' ? 2 water nat water 18.015 92 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Coproporphyrinogenase, Coprogen oxidase, COX' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DPRNLPIRQQMEALIRRKQAEITQGLESIDTVKFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVNVSVVYGQLSPAAVSA MKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTTHLNYRYFETWNQDGTPQTWWFGGGADLTPSYLYEE DGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIVKR RKDMPYTKEEQQWQAIRRGR ; _entity_poly.pdbx_seq_one_letter_code_can ;DPRNLPIRQQMEALIRRKQAEITQGLESIDTVKFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVNVSVVYGQLSPAAVSA MKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTTHLNYRYFETWNQDGTPQTWWFGGGADLTPSYLYEE DGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIVKR RKDMPYTKEEQQWQAIRRGR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 PRO n 1 3 ARG n 1 4 ASN n 1 5 LEU n 1 6 PRO n 1 7 ILE n 1 8 ARG n 1 9 GLN n 1 10 GLN n 1 11 MET n 1 12 GLU n 1 13 ALA n 1 14 LEU n 1 15 ILE n 1 16 ARG n 1 17 ARG n 1 18 LYS n 1 19 GLN n 1 20 ALA n 1 21 GLU n 1 22 ILE n 1 23 THR n 1 24 GLN n 1 25 GLY n 1 26 LEU n 1 27 GLU n 1 28 SER n 1 29 ILE n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LYS n 1 34 PHE n 1 35 HIS n 1 36 ALA n 1 37 ASP n 1 38 THR n 1 39 TRP n 1 40 THR n 1 41 ARG n 1 42 GLY n 1 43 ASN n 1 44 ASP n 1 45 GLY n 1 46 GLY n 1 47 GLY n 1 48 GLY n 1 49 THR n 1 50 SER n 1 51 MET n 1 52 VAL n 1 53 ILE n 1 54 GLN n 1 55 ASP n 1 56 GLY n 1 57 THR n 1 58 THR n 1 59 PHE n 1 60 GLU n 1 61 LYS n 1 62 GLY n 1 63 GLY n 1 64 VAL n 1 65 ASN n 1 66 VAL n 1 67 SER n 1 68 VAL n 1 69 VAL n 1 70 TYR n 1 71 GLY n 1 72 GLN n 1 73 LEU n 1 74 SER n 1 75 PRO n 1 76 ALA n 1 77 ALA n 1 78 VAL n 1 79 SER n 1 80 ALA n 1 81 MET n 1 82 LYS n 1 83 ALA n 1 84 ASP n 1 85 HIS n 1 86 LYS n 1 87 ASN n 1 88 LEU n 1 89 ARG n 1 90 LEU n 1 91 PRO n 1 92 GLU n 1 93 ASP n 1 94 PRO n 1 95 LYS n 1 96 THR n 1 97 GLY n 1 98 LEU n 1 99 PRO n 1 100 VAL n 1 101 THR n 1 102 ASP n 1 103 GLY n 1 104 VAL n 1 105 LYS n 1 106 PHE n 1 107 PHE n 1 108 ALA n 1 109 CYS n 1 110 GLY n 1 111 LEU n 1 112 SER n 1 113 MET n 1 114 VAL n 1 115 ILE n 1 116 HIS n 1 117 PRO n 1 118 VAL n 1 119 ASN n 1 120 PRO n 1 121 HIS n 1 122 ALA n 1 123 PRO n 1 124 THR n 1 125 THR n 1 126 HIS n 1 127 LEU n 1 128 ASN n 1 129 TYR n 1 130 ARG n 1 131 TYR n 1 132 PHE n 1 133 GLU n 1 134 THR n 1 135 TRP n 1 136 ASN n 1 137 GLN n 1 138 ASP n 1 139 GLY n 1 140 THR n 1 141 PRO n 1 142 GLN n 1 143 THR n 1 144 TRP n 1 145 TRP n 1 146 PHE n 1 147 GLY n 1 148 GLY n 1 149 GLY n 1 150 ALA n 1 151 ASP n 1 152 LEU n 1 153 THR n 1 154 PRO n 1 155 SER n 1 156 TYR n 1 157 LEU n 1 158 TYR n 1 159 GLU n 1 160 GLU n 1 161 ASP n 1 162 GLY n 1 163 GLN n 1 164 LEU n 1 165 PHE n 1 166 HIS n 1 167 GLN n 1 168 LEU n 1 169 HIS n 1 170 LYS n 1 171 ASP n 1 172 ALA n 1 173 LEU n 1 174 ASP n 1 175 LYS n 1 176 HIS n 1 177 ASP n 1 178 THR n 1 179 ALA n 1 180 LEU n 1 181 TYR n 1 182 PRO n 1 183 ARG n 1 184 PHE n 1 185 LYS n 1 186 LYS n 1 187 TRP n 1 188 CYS n 1 189 ASP n 1 190 GLU n 1 191 TYR n 1 192 PHE n 1 193 TYR n 1 194 ILE n 1 195 THR n 1 196 HIS n 1 197 ARG n 1 198 LYS n 1 199 GLU n 1 200 THR n 1 201 ARG n 1 202 GLY n 1 203 ILE n 1 204 GLY n 1 205 GLY n 1 206 ILE n 1 207 PHE n 1 208 PHE n 1 209 ASP n 1 210 ASP n 1 211 TYR n 1 212 ASP n 1 213 GLU n 1 214 ARG n 1 215 ASP n 1 216 PRO n 1 217 GLN n 1 218 GLU n 1 219 ILE n 1 220 LEU n 1 221 LYS n 1 222 MET n 1 223 VAL n 1 224 GLU n 1 225 ASP n 1 226 CYS n 1 227 PHE n 1 228 ASP n 1 229 ALA n 1 230 PHE n 1 231 LEU n 1 232 PRO n 1 233 SER n 1 234 TYR n 1 235 LEU n 1 236 THR n 1 237 ILE n 1 238 VAL n 1 239 LYS n 1 240 ARG n 1 241 ARG n 1 242 LYS n 1 243 ASP n 1 244 MET n 1 245 PRO n 1 246 TYR n 1 247 THR n 1 248 LYS n 1 249 GLU n 1 250 GLU n 1 251 GLN n 1 252 GLN n 1 253 TRP n 1 254 GLN n 1 255 ALA n 1 256 ILE n 1 257 ARG n 1 258 ARG n 1 259 GLY n 1 260 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;baker's yeast ; _entity_src_gen.gene_src_genus Saccharomyces _entity_src_gen.pdbx_gene_src_gene 'HEM13, YDR044W, YD5112.02' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)plysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET16B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HEM6_YEAST _struct_ref.pdbx_db_accession P11353 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DPRNLPIRQQMEALIRRKQAEITQGLESIDTVKFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVNVSVVYGQLSPAAVSA MKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTTHLNYRYFETWNQDGTPQTWWFGGGADLTPSYLYEE DGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIVKR RKDMPYTKEEQQWQAIRRGR ; _struct_ref.pdbx_align_begin 6 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1TK1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 260 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P11353 _struct_ref_seq.db_align_beg 6 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 265 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 6 _struct_ref_seq.pdbx_auth_seq_align_end 265 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1TK1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.3 _exptl_crystal.density_percent_sol 50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_details '20% PEG 3000, 0.1 M HEPES, 0.2 M sodium acetate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K, pH 7.50' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-02-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.10 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X8C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X8C _diffrn_source.pdbx_wavelength 1.10 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1TK1 _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 59.760 _reflns.d_resolution_high 1.900 _reflns.number_obs 21772 _reflns.number_all ? _reflns.percent_possible_obs 96.9 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_Rsym_value 0.072 _reflns.pdbx_netI_over_sigmaI 20.0000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 28.700 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 95.6 _reflns_shell.Rmerge_I_obs 0.585 _reflns_shell.pdbx_Rsym_value 0.585 _reflns_shell.meanI_over_sigI_obs 7.000 _reflns_shell.pdbx_redundancy 29.60 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1TK1 _refine.ls_number_reflns_obs 21772 _refine.ls_number_reflns_all 21772 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 59.76 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 96.86 _refine.ls_R_factor_obs 0.21713 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21542 _refine.ls_R_factor_R_free 0.24907 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1182 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.930 _refine.B_iso_mean 29.484 _refine.aniso_B[1][1] 0.23 _refine.aniso_B[2][2] 0.23 _refine.aniso_B[3][3] -0.46 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'SAD - CHROMIUM SULFUR ANOMALOUS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.152 _refine.pdbx_overall_ESU_R_Free 0.143 _refine.overall_SU_ML 0.087 _refine.overall_SU_B 2.860 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1TK1 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.144 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1775 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 1867 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 59.76 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.021 ? 1821 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.851 1.923 ? 2462 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 9.089 5.000 ? 219 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.099 24.086 ? 93 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.693 15.000 ? 305 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.333 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.169 0.200 ? 255 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1415 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.235 0.200 ? 875 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.313 0.200 ? 1242 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.172 0.200 ? 127 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.395 0.200 ? 59 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.167 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.431 1.500 ? 1135 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.361 2.000 ? 1761 'X-RAY DIFFRACTION' ? r_scbond_it 3.222 3.000 ? 799 'X-RAY DIFFRACTION' ? r_scangle_it 4.879 4.500 ? 701 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.number_reflns_R_work 1558 _refine_ls_shell.R_factor_R_work 0.222 _refine_ls_shell.percent_reflns_obs 95.16 _refine_ls_shell.R_factor_R_free 0.283 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1TK1 _struct.title 'YEAST OXYGEN-DEPENDENT COPROPORPHYRINOGEN OXIDASE' _struct.pdbx_descriptor 'Coproporphyrinogen III oxidase (E.C.1.3.3.3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1TK1 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'coproporphyrinogen oxidase, heme biosynthesis, enzyme, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 6 ? SER A 28 ? PRO A 11 SER A 33 1 ? 23 HELX_P HELX_P2 2 SER A 74 ? LYS A 82 ? SER A 79 LYS A 87 1 ? 9 HELX_P HELX_P3 3 ALA A 83 ? HIS A 85 ? ALA A 88 HIS A 90 5 ? 3 HELX_P HELX_P4 4 TYR A 158 ? LYS A 175 ? TYR A 163 LYS A 180 1 ? 18 HELX_P HELX_P5 5 ALA A 179 ? LYS A 185 ? ALA A 184 LYS A 190 1 ? 7 HELX_P HELX_P6 6 ASP A 215 ? LYS A 242 ? ASP A 220 LYS A 247 1 ? 28 HELX_P HELX_P7 7 THR A 247 ? GLY A 259 ? THR A 252 GLY A 264 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 46 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 51 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 47 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 52 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 11.41 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 49 ? GLN A 54 ? THR A 54 GLN A 59 A 2 PHE A 59 ? LEU A 73 ? PHE A 64 LEU A 78 A 3 VAL A 104 ? PRO A 117 ? VAL A 109 PRO A 122 A 4 THR A 124 ? THR A 134 ? THR A 129 THR A 139 A 5 TRP A 144 ? THR A 153 ? TRP A 149 THR A 158 A 6 GLY A 204 ? TYR A 211 ? GLY A 209 TYR A 216 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 49 ? N THR A 54 O VAL A 66 ? O VAL A 71 A 2 3 N ASN A 65 ? N ASN A 70 O SER A 112 ? O SER A 117 A 3 4 N LEU A 111 ? N LEU A 116 O TYR A 129 ? O TYR A 134 A 4 5 N ARG A 130 ? N ARG A 135 O GLY A 147 ? O GLY A 152 A 5 6 N GLY A 148 ? N GLY A 153 O PHE A 208 ? O PHE A 213 # _database_PDB_matrix.entry_id 1TK1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1TK1 _atom_sites.fract_transf_matrix[1][1] 0.014114 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014114 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008730 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 6 ? ? ? A . n A 1 2 PRO 2 7 ? ? ? A . n A 1 3 ARG 3 8 8 ARG ARG A . n A 1 4 ASN 4 9 9 ASN ASN A . n A 1 5 LEU 5 10 10 LEU LEU A . n A 1 6 PRO 6 11 11 PRO PRO A . n A 1 7 ILE 7 12 12 ILE ILE A . n A 1 8 ARG 8 13 13 ARG ARG A . n A 1 9 GLN 9 14 14 GLN GLN A . n A 1 10 GLN 10 15 15 GLN GLN A . n A 1 11 MET 11 16 16 MET MET A . n A 1 12 GLU 12 17 17 GLU GLU A . n A 1 13 ALA 13 18 18 ALA ALA A . n A 1 14 LEU 14 19 19 LEU LEU A . n A 1 15 ILE 15 20 20 ILE ILE A . n A 1 16 ARG 16 21 21 ARG ARG A . n A 1 17 ARG 17 22 22 ARG ARG A . n A 1 18 LYS 18 23 23 LYS LYS A . n A 1 19 GLN 19 24 24 GLN GLN A . n A 1 20 ALA 20 25 25 ALA ALA A . n A 1 21 GLU 21 26 26 GLU GLU A . n A 1 22 ILE 22 27 27 ILE ILE A . n A 1 23 THR 23 28 28 THR THR A . n A 1 24 GLN 24 29 29 GLN GLN A . n A 1 25 GLY 25 30 30 GLY GLY A . n A 1 26 LEU 26 31 31 LEU LEU A . n A 1 27 GLU 27 32 32 GLU GLU A . n A 1 28 SER 28 33 33 SER SER A . n A 1 29 ILE 29 34 34 ILE ILE A . n A 1 30 ASP 30 35 35 ASP ASP A . n A 1 31 THR 31 36 36 THR THR A . n A 1 32 VAL 32 37 37 VAL VAL A . n A 1 33 LYS 33 38 38 LYS LYS A . n A 1 34 PHE 34 39 39 PHE PHE A . n A 1 35 HIS 35 40 40 HIS HIS A . n A 1 36 ALA 36 41 41 ALA ALA A . n A 1 37 ASP 37 42 ? ? ? A . n A 1 38 THR 38 43 ? ? ? A . n A 1 39 TRP 39 44 ? ? ? A . n A 1 40 THR 40 45 ? ? ? A . n A 1 41 ARG 41 46 ? ? ? A . n A 1 42 GLY 42 47 ? ? ? A . n A 1 43 ASN 43 48 ? ? ? A . n A 1 44 ASP 44 49 ? ? ? A . n A 1 45 GLY 45 50 ? ? ? A . n A 1 46 GLY 46 51 51 GLY GLY A . n A 1 47 GLY 47 52 52 GLY GLY A . n A 1 48 GLY 48 53 53 GLY GLY A . n A 1 49 THR 49 54 54 THR THR A . n A 1 50 SER 50 55 55 SER SER A . n A 1 51 MET 51 56 56 MET MET A . n A 1 52 VAL 52 57 57 VAL VAL A . n A 1 53 ILE 53 58 58 ILE ILE A . n A 1 54 GLN 54 59 59 GLN GLN A . n A 1 55 ASP 55 60 60 ASP ASP A . n A 1 56 GLY 56 61 61 GLY GLY A . n A 1 57 THR 57 62 62 THR THR A . n A 1 58 THR 58 63 63 THR THR A . n A 1 59 PHE 59 64 64 PHE PHE A . n A 1 60 GLU 60 65 65 GLU GLU A . n A 1 61 LYS 61 66 66 LYS LYS A . n A 1 62 GLY 62 67 67 GLY GLY A . n A 1 63 GLY 63 68 68 GLY GLY A . n A 1 64 VAL 64 69 69 VAL VAL A . n A 1 65 ASN 65 70 70 ASN ASN A . n A 1 66 VAL 66 71 71 VAL VAL A . n A 1 67 SER 67 72 72 SER SER A . n A 1 68 VAL 68 73 73 VAL VAL A . n A 1 69 VAL 69 74 74 VAL VAL A . n A 1 70 TYR 70 75 75 TYR TYR A . n A 1 71 GLY 71 76 76 GLY GLY A . n A 1 72 GLN 72 77 77 GLN GLN A . n A 1 73 LEU 73 78 78 LEU LEU A . n A 1 74 SER 74 79 79 SER SER A . n A 1 75 PRO 75 80 80 PRO PRO A . n A 1 76 ALA 76 81 81 ALA ALA A . n A 1 77 ALA 77 82 82 ALA ALA A . n A 1 78 VAL 78 83 83 VAL VAL A . n A 1 79 SER 79 84 84 SER SER A . n A 1 80 ALA 80 85 85 ALA ALA A . n A 1 81 MET 81 86 86 MET MET A . n A 1 82 LYS 82 87 87 LYS LYS A . n A 1 83 ALA 83 88 88 ALA ALA A . n A 1 84 ASP 84 89 89 ASP ASP A . n A 1 85 HIS 85 90 90 HIS HIS A . n A 1 86 LYS 86 91 91 LYS LYS A . n A 1 87 ASN 87 92 ? ? ? A . n A 1 88 LEU 88 93 ? ? ? A . n A 1 89 ARG 89 94 ? ? ? A . n A 1 90 LEU 90 95 ? ? ? A . n A 1 91 PRO 91 96 ? ? ? A . n A 1 92 GLU 92 97 ? ? ? A . n A 1 93 ASP 93 98 ? ? ? A . n A 1 94 PRO 94 99 ? ? ? A . n A 1 95 LYS 95 100 ? ? ? A . n A 1 96 THR 96 101 ? ? ? A . n A 1 97 GLY 97 102 ? ? ? A . n A 1 98 LEU 98 103 ? ? ? A . n A 1 99 PRO 99 104 ? ? ? A . n A 1 100 VAL 100 105 ? ? ? A . n A 1 101 THR 101 106 ? ? ? A . n A 1 102 ASP 102 107 107 ASP ASP A . n A 1 103 GLY 103 108 108 GLY GLY A . n A 1 104 VAL 104 109 109 VAL VAL A . n A 1 105 LYS 105 110 110 LYS LYS A . n A 1 106 PHE 106 111 111 PHE PHE A . n A 1 107 PHE 107 112 112 PHE PHE A . n A 1 108 ALA 108 113 113 ALA ALA A . n A 1 109 CYS 109 114 114 CYS CYS A . n A 1 110 GLY 110 115 115 GLY GLY A . n A 1 111 LEU 111 116 116 LEU LEU A . n A 1 112 SER 112 117 117 SER SER A . n A 1 113 MET 113 118 118 MET MET A . n A 1 114 VAL 114 119 119 VAL VAL A . n A 1 115 ILE 115 120 120 ILE ILE A . n A 1 116 HIS 116 121 121 HIS HIS A . n A 1 117 PRO 117 122 122 PRO PRO A . n A 1 118 VAL 118 123 123 VAL VAL A . n A 1 119 ASN 119 124 124 ASN ASN A . n A 1 120 PRO 120 125 125 PRO PRO A . n A 1 121 HIS 121 126 126 HIS HIS A . n A 1 122 ALA 122 127 127 ALA ALA A . n A 1 123 PRO 123 128 128 PRO PRO A . n A 1 124 THR 124 129 129 THR THR A . n A 1 125 THR 125 130 130 THR THR A . n A 1 126 HIS 126 131 131 HIS HIS A . n A 1 127 LEU 127 132 132 LEU LEU A . n A 1 128 ASN 128 133 133 ASN ASN A . n A 1 129 TYR 129 134 134 TYR TYR A . n A 1 130 ARG 130 135 135 ARG ARG A . n A 1 131 TYR 131 136 136 TYR TYR A . n A 1 132 PHE 132 137 137 PHE PHE A . n A 1 133 GLU 133 138 138 GLU GLU A . n A 1 134 THR 134 139 139 THR THR A . n A 1 135 TRP 135 140 140 TRP TRP A . n A 1 136 ASN 136 141 141 ASN ASN A . n A 1 137 GLN 137 142 142 GLN GLN A . n A 1 138 ASP 138 143 143 ASP ASP A . n A 1 139 GLY 139 144 144 GLY GLY A . n A 1 140 THR 140 145 145 THR THR A . n A 1 141 PRO 141 146 146 PRO PRO A . n A 1 142 GLN 142 147 147 GLN GLN A . n A 1 143 THR 143 148 148 THR THR A . n A 1 144 TRP 144 149 149 TRP TRP A . n A 1 145 TRP 145 150 150 TRP TRP A . n A 1 146 PHE 146 151 151 PHE PHE A . n A 1 147 GLY 147 152 152 GLY GLY A . n A 1 148 GLY 148 153 153 GLY GLY A . n A 1 149 GLY 149 154 154 GLY GLY A . n A 1 150 ALA 150 155 155 ALA ALA A . n A 1 151 ASP 151 156 156 ASP ASP A . n A 1 152 LEU 152 157 157 LEU LEU A . n A 1 153 THR 153 158 158 THR THR A . n A 1 154 PRO 154 159 159 PRO PRO A . n A 1 155 SER 155 160 160 SER SER A . n A 1 156 TYR 156 161 161 TYR TYR A . n A 1 157 LEU 157 162 162 LEU LEU A . n A 1 158 TYR 158 163 163 TYR TYR A . n A 1 159 GLU 159 164 164 GLU GLU A . n A 1 160 GLU 160 165 165 GLU GLU A . n A 1 161 ASP 161 166 166 ASP ASP A . n A 1 162 GLY 162 167 167 GLY GLY A . n A 1 163 GLN 163 168 168 GLN GLN A . n A 1 164 LEU 164 169 169 LEU LEU A . n A 1 165 PHE 165 170 170 PHE PHE A . n A 1 166 HIS 166 171 171 HIS HIS A . n A 1 167 GLN 167 172 172 GLN GLN A . n A 1 168 LEU 168 173 173 LEU LEU A . n A 1 169 HIS 169 174 174 HIS HIS A . n A 1 170 LYS 170 175 175 LYS LYS A . n A 1 171 ASP 171 176 176 ASP ASP A . n A 1 172 ALA 172 177 177 ALA ALA A . n A 1 173 LEU 173 178 178 LEU LEU A . n A 1 174 ASP 174 179 179 ASP ASP A . n A 1 175 LYS 175 180 180 LYS LYS A . n A 1 176 HIS 176 181 181 HIS HIS A . n A 1 177 ASP 177 182 182 ASP ASP A . n A 1 178 THR 178 183 183 THR THR A . n A 1 179 ALA 179 184 184 ALA ALA A . n A 1 180 LEU 180 185 185 LEU LEU A . n A 1 181 TYR 181 186 186 TYR TYR A . n A 1 182 PRO 182 187 187 PRO PRO A . n A 1 183 ARG 183 188 188 ARG ARG A . n A 1 184 PHE 184 189 189 PHE PHE A . n A 1 185 LYS 185 190 190 LYS LYS A . n A 1 186 LYS 186 191 191 LYS LYS A . n A 1 187 TRP 187 192 ? ? ? A . n A 1 188 CYS 188 193 ? ? ? A . n A 1 189 ASP 189 194 ? ? ? A . n A 1 190 GLU 190 195 ? ? ? A . n A 1 191 TYR 191 196 ? ? ? A . n A 1 192 PHE 192 197 ? ? ? A . n A 1 193 TYR 193 198 ? ? ? A . n A 1 194 ILE 194 199 ? ? ? A . n A 1 195 THR 195 200 ? ? ? A . n A 1 196 HIS 196 201 ? ? ? A . n A 1 197 ARG 197 202 ? ? ? A . n A 1 198 LYS 198 203 ? ? ? A . n A 1 199 GLU 199 204 ? ? ? A . n A 1 200 THR 200 205 ? ? ? A . n A 1 201 ARG 201 206 ? ? ? A . n A 1 202 GLY 202 207 207 GLY GLY A . n A 1 203 ILE 203 208 208 ILE ILE A . n A 1 204 GLY 204 209 209 GLY GLY A . n A 1 205 GLY 205 210 210 GLY GLY A . n A 1 206 ILE 206 211 211 ILE ILE A . n A 1 207 PHE 207 212 212 PHE PHE A . n A 1 208 PHE 208 213 213 PHE PHE A . n A 1 209 ASP 209 214 214 ASP ASP A . n A 1 210 ASP 210 215 215 ASP ASP A . n A 1 211 TYR 211 216 216 TYR TYR A . n A 1 212 ASP 212 217 217 ASP ASP A . n A 1 213 GLU 213 218 218 GLU GLU A . n A 1 214 ARG 214 219 219 ARG ARG A . n A 1 215 ASP 215 220 220 ASP ASP A . n A 1 216 PRO 216 221 221 PRO PRO A . n A 1 217 GLN 217 222 222 GLN GLN A . n A 1 218 GLU 218 223 223 GLU GLU A . n A 1 219 ILE 219 224 224 ILE ILE A . n A 1 220 LEU 220 225 225 LEU LEU A . n A 1 221 LYS 221 226 226 LYS LYS A . n A 1 222 MET 222 227 227 MET MET A . n A 1 223 VAL 223 228 228 VAL VAL A . n A 1 224 GLU 224 229 229 GLU GLU A . n A 1 225 ASP 225 230 230 ASP ASP A . n A 1 226 CYS 226 231 231 CYS CYS A . n A 1 227 PHE 227 232 232 PHE PHE A . n A 1 228 ASP 228 233 233 ASP ASP A . n A 1 229 ALA 229 234 234 ALA ALA A . n A 1 230 PHE 230 235 235 PHE PHE A . n A 1 231 LEU 231 236 236 LEU LEU A . n A 1 232 PRO 232 237 237 PRO PRO A . n A 1 233 SER 233 238 238 SER SER A . n A 1 234 TYR 234 239 239 TYR TYR A . n A 1 235 LEU 235 240 240 LEU LEU A . n A 1 236 THR 236 241 241 THR THR A . n A 1 237 ILE 237 242 242 ILE ILE A . n A 1 238 VAL 238 243 243 VAL VAL A . n A 1 239 LYS 239 244 244 LYS LYS A . n A 1 240 ARG 240 245 245 ARG ARG A . n A 1 241 ARG 241 246 246 ARG ARG A . n A 1 242 LYS 242 247 247 LYS LYS A . n A 1 243 ASP 243 248 248 ASP ASP A . n A 1 244 MET 244 249 249 MET MET A . n A 1 245 PRO 245 250 250 PRO PRO A . n A 1 246 TYR 246 251 251 TYR TYR A . n A 1 247 THR 247 252 252 THR THR A . n A 1 248 LYS 248 253 253 LYS LYS A . n A 1 249 GLU 249 254 254 GLU GLU A . n A 1 250 GLU 250 255 255 GLU GLU A . n A 1 251 GLN 251 256 256 GLN GLN A . n A 1 252 GLN 252 257 257 GLN GLN A . n A 1 253 TRP 253 258 258 TRP TRP A . n A 1 254 GLN 254 259 259 GLN GLN A . n A 1 255 ALA 255 260 260 ALA ALA A . n A 1 256 ILE 256 261 261 ILE ILE A . n A 1 257 ARG 257 262 262 ARG ARG A . n A 1 258 ARG 258 263 263 ARG ARG A . n A 1 259 GLY 259 264 264 GLY GLY A . n A 1 260 ARG 260 265 265 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 266 1 HOH HOH A . B 2 HOH 2 267 2 HOH HOH A . B 2 HOH 3 268 3 HOH HOH A . B 2 HOH 4 269 4 HOH HOH A . B 2 HOH 5 270 5 HOH HOH A . B 2 HOH 6 271 6 HOH HOH A . B 2 HOH 7 272 7 HOH HOH A . B 2 HOH 8 273 8 HOH HOH A . B 2 HOH 9 274 9 HOH HOH A . B 2 HOH 10 275 10 HOH HOH A . B 2 HOH 11 276 11 HOH HOH A . B 2 HOH 12 277 12 HOH HOH A . B 2 HOH 13 278 13 HOH HOH A . B 2 HOH 14 279 14 HOH HOH A . B 2 HOH 15 280 15 HOH HOH A . B 2 HOH 16 281 16 HOH HOH A . B 2 HOH 17 282 17 HOH HOH A . B 2 HOH 18 283 18 HOH HOH A . B 2 HOH 19 284 19 HOH HOH A . B 2 HOH 20 285 20 HOH HOH A . B 2 HOH 21 286 21 HOH HOH A . B 2 HOH 22 287 22 HOH HOH A . B 2 HOH 23 288 23 HOH HOH A . B 2 HOH 24 289 24 HOH HOH A . B 2 HOH 25 290 25 HOH HOH A . B 2 HOH 26 291 26 HOH HOH A . B 2 HOH 27 292 27 HOH HOH A . B 2 HOH 28 293 28 HOH HOH A . B 2 HOH 29 294 29 HOH HOH A . B 2 HOH 30 295 30 HOH HOH A . B 2 HOH 31 296 31 HOH HOH A . B 2 HOH 32 297 32 HOH HOH A . B 2 HOH 33 298 33 HOH HOH A . B 2 HOH 34 299 34 HOH HOH A . B 2 HOH 35 300 35 HOH HOH A . B 2 HOH 36 301 36 HOH HOH A . B 2 HOH 37 302 37 HOH HOH A . B 2 HOH 38 303 38 HOH HOH A . B 2 HOH 39 304 39 HOH HOH A . B 2 HOH 40 305 40 HOH HOH A . B 2 HOH 41 306 41 HOH HOH A . B 2 HOH 42 307 42 HOH HOH A . B 2 HOH 43 308 43 HOH HOH A . B 2 HOH 44 309 44 HOH HOH A . B 2 HOH 45 310 45 HOH HOH A . B 2 HOH 46 311 46 HOH HOH A . B 2 HOH 47 312 47 HOH HOH A . B 2 HOH 48 313 48 HOH HOH A . B 2 HOH 49 314 49 HOH HOH A . B 2 HOH 50 315 50 HOH HOH A . B 2 HOH 51 316 51 HOH HOH A . B 2 HOH 52 317 52 HOH HOH A . B 2 HOH 53 318 53 HOH HOH A . B 2 HOH 54 319 54 HOH HOH A . B 2 HOH 55 320 55 HOH HOH A . B 2 HOH 56 321 56 HOH HOH A . B 2 HOH 57 322 57 HOH HOH A . B 2 HOH 58 323 58 HOH HOH A . B 2 HOH 59 324 59 HOH HOH A . B 2 HOH 60 325 60 HOH HOH A . B 2 HOH 61 326 61 HOH HOH A . B 2 HOH 62 327 62 HOH HOH A . B 2 HOH 63 328 63 HOH HOH A . B 2 HOH 64 329 64 HOH HOH A . B 2 HOH 65 330 65 HOH HOH A . B 2 HOH 66 331 66 HOH HOH A . B 2 HOH 67 332 67 HOH HOH A . B 2 HOH 68 333 68 HOH HOH A . B 2 HOH 69 334 69 HOH HOH A . B 2 HOH 70 335 70 HOH HOH A . B 2 HOH 71 336 71 HOH HOH A . B 2 HOH 72 337 72 HOH HOH A . B 2 HOH 73 338 73 HOH HOH A . B 2 HOH 74 339 74 HOH HOH A . B 2 HOH 75 340 75 HOH HOH A . B 2 HOH 76 341 76 HOH HOH A . B 2 HOH 77 342 77 HOH HOH A . B 2 HOH 78 343 78 HOH HOH A . B 2 HOH 79 344 79 HOH HOH A . B 2 HOH 80 345 80 HOH HOH A . B 2 HOH 81 346 81 HOH HOH A . B 2 HOH 82 347 82 HOH HOH A . B 2 HOH 83 348 83 HOH HOH A . B 2 HOH 84 349 84 HOH HOH A . B 2 HOH 85 350 85 HOH HOH A . B 2 HOH 86 351 86 HOH HOH A . B 2 HOH 87 352 87 HOH HOH A . B 2 HOH 88 353 88 HOH HOH A . B 2 HOH 89 354 89 HOH HOH A . B 2 HOH 90 355 90 HOH HOH A . B 2 HOH 91 356 91 HOH HOH A . B 2 HOH 92 357 92 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 286 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-07-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0001 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD2 A ASP 89 ? ? O A HOH 336 ? ? 2.12 2 1 O A TRP 140 ? ? O A HOH 335 ? ? 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 182 ? ? CG A ASP 182 ? ? OD2 A ASP 182 ? ? 123.99 118.30 5.69 0.90 N 2 1 CB A ASP 217 ? ? CG A ASP 217 ? ? OD2 A ASP 217 ? ? 125.20 118.30 6.90 0.90 N 3 1 CB A LEU 236 ? ? CG A LEU 236 ? ? CD1 A LEU 236 ? ? 123.20 111.00 12.20 1.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 9 ? ? 48.58 -163.14 2 1 TRP A 140 ? ? -128.53 -143.13 3 1 ASN A 141 ? ? 80.45 98.57 4 1 GLN A 142 ? ? 39.65 94.04 5 1 ASP A 143 ? ? -64.20 -78.51 6 1 THR A 145 ? ? -117.97 -78.99 7 1 GLN A 147 ? ? -125.89 -64.13 8 1 SER A 160 ? ? -92.00 -74.95 9 1 ASP A 182 ? ? -174.90 145.53 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ASN A 141 ? ? GLN A 142 ? ? -145.31 2 1 GLY A 144 ? ? THR A 145 ? ? 149.80 3 1 PRO A 146 ? ? GLN A 147 ? ? 126.72 4 1 GLY A 264 ? ? ARG A 265 ? ? 145.68 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 265 ? CG ? A ARG 260 CG 2 1 Y 1 A ARG 265 ? CD ? A ARG 260 CD 3 1 Y 1 A ARG 265 ? NE ? A ARG 260 NE 4 1 Y 1 A ARG 265 ? CZ ? A ARG 260 CZ 5 1 Y 1 A ARG 265 ? NH1 ? A ARG 260 NH1 6 1 Y 1 A ARG 265 ? NH2 ? A ARG 260 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 6 ? A ASP 1 2 1 Y 1 A PRO 7 ? A PRO 2 3 1 Y 1 A ASP 42 ? A ASP 37 4 1 Y 1 A THR 43 ? A THR 38 5 1 Y 1 A TRP 44 ? A TRP 39 6 1 Y 1 A THR 45 ? A THR 40 7 1 Y 1 A ARG 46 ? A ARG 41 8 1 Y 1 A GLY 47 ? A GLY 42 9 1 Y 1 A ASN 48 ? A ASN 43 10 1 Y 1 A ASP 49 ? A ASP 44 11 1 Y 1 A GLY 50 ? A GLY 45 12 1 Y 1 A ASN 92 ? A ASN 87 13 1 Y 1 A LEU 93 ? A LEU 88 14 1 Y 1 A ARG 94 ? A ARG 89 15 1 Y 1 A LEU 95 ? A LEU 90 16 1 Y 1 A PRO 96 ? A PRO 91 17 1 Y 1 A GLU 97 ? A GLU 92 18 1 Y 1 A ASP 98 ? A ASP 93 19 1 Y 1 A PRO 99 ? A PRO 94 20 1 Y 1 A LYS 100 ? A LYS 95 21 1 Y 1 A THR 101 ? A THR 96 22 1 Y 1 A GLY 102 ? A GLY 97 23 1 Y 1 A LEU 103 ? A LEU 98 24 1 Y 1 A PRO 104 ? A PRO 99 25 1 Y 1 A VAL 105 ? A VAL 100 26 1 Y 1 A THR 106 ? A THR 101 27 1 Y 1 A TRP 192 ? A TRP 187 28 1 Y 1 A CYS 193 ? A CYS 188 29 1 Y 1 A ASP 194 ? A ASP 189 30 1 Y 1 A GLU 195 ? A GLU 190 31 1 Y 1 A TYR 196 ? A TYR 191 32 1 Y 1 A PHE 197 ? A PHE 192 33 1 Y 1 A TYR 198 ? A TYR 193 34 1 Y 1 A ILE 199 ? A ILE 194 35 1 Y 1 A THR 200 ? A THR 195 36 1 Y 1 A HIS 201 ? A HIS 196 37 1 Y 1 A ARG 202 ? A ARG 197 38 1 Y 1 A LYS 203 ? A LYS 198 39 1 Y 1 A GLU 204 ? A GLU 199 40 1 Y 1 A THR 205 ? A THR 200 41 1 Y 1 A ARG 206 ? A ARG 201 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #