HEADER HYDROLASE/HYDROLASE INHIBITOR 29-JUN-87 1TLP TITLE CRYSTALLOGRAPHIC STRUCTURAL ANALYSIS OF PHOSPHORAMIDATES AS INHIBITORS TITLE 2 AND TRANSITION-STATE ANALOGS OF THERMOLYSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 EC: 3.4.24.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS METALLOPROTEINASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.E.TRONRUD,A.F.MONZINGO,B.W.MATTHEWS REVDAT 8 13-MAR-24 1TLP 1 SOURCE REVDAT 7 23-NOV-22 1TLP 1 REMARK LINK SCALE ATOM REVDAT 6 29-NOV-17 1TLP 1 HELIX REVDAT 5 13-JUL-11 1TLP 1 VERSN REVDAT 4 25-AUG-09 1TLP 1 SOURCE REVDAT 3 24-FEB-09 1TLP 1 VERSN REVDAT 2 08-MAR-95 1TLP 1 COMPND REVDAT 1 09-JAN-89 1TLP 0 JRNL AUTH D.E.TRONRUD,A.F.MONZINGO,B.W.MATTHEWS JRNL TITL CRYSTALLOGRAPHIC STRUCTURAL ANALYSIS OF PHOSPHORAMIDATES AS JRNL TITL 2 INHIBITORS AND TRANSITION-STATE ANALOGS OF THERMOLYSIN. JRNL REF EUR.J.BIOCHEM. V. 157 261 1986 JRNL REFN ISSN 0014-2956 JRNL PMID 3709536 JRNL DOI 10.1111/J.1432-1033.1986.TB09664.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.E.TRONRUD,H.M.HOLDEN,B.W.MATTHEWS REMARK 1 TITL STRUCTURES OF TWO THERMOLYSIN-INHIBITOR COMPLEXES THAT REMARK 1 TITL 2 DIFFER BY A SINGLE HYDROGEN BOND REMARK 1 REF SCIENCE V. 235 571 1987 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.G.HANGAUER,A.F.MONZINGO,B.W.MATTHEWS REMARK 1 TITL AN INTERACTIVE COMPUTER GRAPHICS STUDY OF REMARK 1 TITL 2 THERMOLYSIN-CATALYZED PEPTIDE CLEAVAGE AND INHIBITION BY REMARK 1 TITL 3 N-CARBOXYMETHYL DIPEPTIDES REMARK 1 REF BIOCHEMISTRY V. 23 5730 1984 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.F.MONZINGO,B.W.MATTHEWS REMARK 1 TITL BINDING OF N-CARBOXYMETHYL DIPEPETIDE INHIBITORS TO REMARK 1 TITL 2 THERMOLYSIN DETERMINED BY X-RAY CRYSTALLOGRAPHY. A NOVEL REMARK 1 TITL 3 CLASS OF TRANSITION-STATE ANALOGUES FOR ZINC PEPTIDASES REMARK 1 REF BIOCHEMISTRY V. 23 5724 1984 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.A.HOLMES,D.E.TRONRUD,B.W.MATTHEWS REMARK 1 TITL STRUCTURAL ANALYSIS OF THE INHIBITION OF THERMOLYSIN BY AN REMARK 1 TITL 2 ACTIVE-SITE-DIRECTED IRREVERSIBLE INHIBITOR REMARK 1 REF BIOCHEMISTRY V. 22 236 1983 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH A.F.MONZINGO,B.W.MATTHEWS REMARK 1 TITL STRUCTURE OF A MERCAPTAN-THERMOLYSIN COMPLEX ILLUSTRATES REMARK 1 TITL 2 MODE OF INHIBITION OF ZINC PROTEASES BY SUBSTRATE-ANALOGUE REMARK 1 TITL 3 MERCAPTANS REMARK 1 REF BIOCHEMISTRY V. 21 3390 1982 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 6 REMARK 1 AUTH M.A.HOLMES,B.W.MATTHEWS REMARK 1 TITL STRUCTURE OF THERMOLYSIN REFINED AT 1.6 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 160 623 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.A.HOLMES,B.W.MATTHEWS REMARK 1 TITL BINDING OF HYDROXAMIC ACID INHIBITORS TO CRYSTALLINE REMARK 1 TITL 2 THERMOLYSIN SUGGESTS A PENTACOORDINATE ZINC INTERMEDIATE IN REMARK 1 TITL 3 CATALYSIS REMARK 1 REF BIOCHEMISTRY V. 20 6912 1981 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 8 REMARK 1 AUTH M.C.BOLOGNESI,B.W.MATTHEWS REMARK 1 TITL BINDING OF THE BIPRODUCT ANALOG L-BENZYLSUCCINIC ACID TO REMARK 1 TITL 2 THERMOLYSIN DETERMINED BY X-RAY CRYSTALLOGRAPHY REMARK 1 REF J.BIOL.CHEM. V. 254 634 1979 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 9 REMARK 1 AUTH W.R.KESTER,B.W.MATTHEWS REMARK 1 TITL COMPARISON OF THE STRUCTURES OF CARBOXYPEPTIDASE A AND REMARK 1 TITL 2 THERMOLYSIN REMARK 1 REF J.BIOL.CHEM. V. 252 7704 1977 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 10 REMARK 1 AUTH L.H.WEAVER,W.R.KESTER,B.W.MATTHEWS REMARK 1 TITL A CRYSTALLOGRAPHIC STUDY OF THE COMPLEX OF PHOSPHORAMIDON REMARK 1 TITL 2 WITH THERMOLYSIN. A MODEL FOR THE PRESUMED CATALYTIC REMARK 1 TITL 3 TRANSITION STATE AND FOR THE BINDING OF EXTENDED SUBSTRATES REMARK 1 REF J.MOL.BIOL. V. 114 119 1977 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 11 REMARK 1 AUTH W.R.KESTER,B.W.MATTHEWS REMARK 1 TITL CRYSTALLOGRAPHIC STUDY OF THE BINDING OF DIPEPTIDE REMARK 1 TITL 2 INHIBITORS TO THERMOLYSIN. IMPLICATIONS FOR THE MECHANISM OF REMARK 1 TITL 3 CATALYSIS REMARK 1 REF BIOCHEMISTRY V. 16 2506 1977 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 12 REMARK 1 AUTH F.W.DAHLQUIST,J.W.LONG,W.L.BIGBEE REMARK 1 TITL ROLE OF CALCIUM IN THE THERMAL STABILITY OF THERMOLYSIN REMARK 1 REF BIOCHEMISTRY V. 15 1103 1976 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 13 REMARK 1 AUTH P.L.LEVY,M.K.PANGBURN,Y.BURSTEIN,L.H.ERICSSON,H.NEURATH, REMARK 1 AUTH 2 K.A.WALSH REMARK 1 TITL EVIDENCE OF HOMOLOGOUS RELATIONSHIP BETWEEN THERMOLYSIN AND REMARK 1 TITL 2 NEUTRAL PROTEASE A OF BACILLUS SUBTILIS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 72 4341 1975 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 14 REMARK 1 AUTH L.H.WEAVER,W.R.KESTER,L.F.TENEYCK,B.W.MATTHEWS REMARK 1 TITL THE STRUCTURE AND STABILITY OF THERMOLYSIN REMARK 1 REF EXPERIENTIA,SUPPL. V. 26 31 1976 REMARK 1 REFN ISSN 0071-335X REMARK 1 REFERENCE 15 REMARK 1 AUTH B.W.MATTHEWS,L.H.WEAVER,W.R.KESTER REMARK 1 TITL THE CONFORMATION OF THERMOLYSIN REMARK 1 REF J.BIOL.CHEM. V. 249 8030 1974 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 16 REMARK 1 AUTH B.W.MATTHEWS,L.H.WEAVER REMARK 1 TITL BINDING OF LANTHANIDE IONS TO THERMOLYSIN REMARK 1 REF BIOCHEMISTRY V. 13 1719 1974 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 17 REMARK 1 AUTH P.M.COLMAN,J.N.JANSONIUS,B.W.MATTHEWS REMARK 1 TITL THE STRUCTURE OF THERMOLYSIN. AN ELECTRON DENSITY MAP AT 2.3 REMARK 1 TITL 2 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 70 701 1972 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 18 REMARK 1 AUTH K.TITANI,M.A.HERMODSON,L.H.ERICSSON,K.A.WALSH,H.NEURATH REMARK 1 TITL AMINO-ACID SEQUENCE OF THERMOLYSIN REMARK 1 REF NATURE NEW BIOL. V. 238 35 1972 REMARK 1 REFN ISSN 0369-4887 REMARK 1 REFERENCE 19 REMARK 1 AUTH B.W.MATTHEWS,J.N.JANSONIUS,P.M.COLMAN,B.P.SCHOENBORN, REMARK 1 AUTH 2 D.DUPORQUE REMARK 1 TITL THREE DIMENSIONAL STRUCTURE OF THERMOLYSIN REMARK 1 REF NATURE NEW BIOL. V. 238 37 1972 REMARK 1 REFN ISSN 0369-4887 REMARK 1 REFERENCE 20 REMARK 1 AUTH B.W.MATTHEWS,P.M.COLMAN,J.N.JANSONIUS,K.TITANI,K.A.WALSH, REMARK 1 AUTH 2 H.NEURATH REMARK 1 TITL STRUCTURE OF THERMOLYSIN REMARK 1 REF NATURE NEW BIOL. V. 238 41 1972 REMARK 1 REFN ISSN 0369-4887 REMARK 1 REFERENCE 21 REMARK 1 AUTH B.W.MATTHEWS REMARK 1 TITL THE GAMMA TURN. EVIDENCE FOR A NEW FOLDED CONFORMATION IN REMARK 1 TITL 2 PROTEINS REMARK 1 REF MACROMOLECULES V. 5 818 1972 REMARK 1 REFN ISSN 0024-9297 REMARK 1 REFERENCE 22 REMARK 1 AUTH P.M.COLMAN,L.H.WEAVER,B.W.MATTHEWS REMARK 1 TITL RARE EARTHS AS ISOMORPHOUS CALCIUM REPLACEMENTS FOR PROTEIN REMARK 1 TITL 2 CRYSTALLOGRAPHY REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 46 1999 1972 REMARK 1 REFN ISSN 0006-291X REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13523 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.022 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.900 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176724. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 23.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.80000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.60000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.70000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.50000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.90000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.80000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.60000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 109.50000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.70000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 434 O HOH E 434 7555 1.03 REMARK 500 O HOH E 387 O HOH E 387 12565 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER E 5 N - CA - CB ANGL. DEV. = 9.1 DEGREES REMARK 500 VAL E 9 CA - CB - CG2 ANGL. DEV. = 9.1 DEGREES REMARK 500 THR E 26 N - CA - CB ANGL. DEV. = 12.4 DEGREES REMARK 500 TYR E 27 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR E 29 CB - CG - CD2 ANGL. DEV. = 4.6 DEGREES REMARK 500 TYR E 29 CB - CG - CD1 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG E 35 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR E 42 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR E 46 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR E 75 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR E 106 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR E 151 CB - CG - CD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG E 220 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG E 220 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG E 260 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG E 260 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TYR E 268 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR E 274 CB - CG - CD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 VAL E 313 CA - CB - CG1 ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 25 87.57 -161.51 REMARK 500 THR E 26 -56.38 70.22 REMARK 500 PHE E 62 61.28 -112.00 REMARK 500 SER E 92 -176.33 62.75 REMARK 500 SER E 107 -162.41 56.70 REMARK 500 ASN E 111 52.63 -92.65 REMARK 500 SER E 118 -12.66 -141.35 REMARK 500 THR E 152 -102.02 -107.70 REMARK 500 ASN E 159 -147.36 59.21 REMARK 500 THR E 194 79.22 30.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 320 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD2 REMARK 620 2 ASP E 57 OD1 50.3 REMARK 620 3 ASP E 59 OD1 70.6 119.7 REMARK 620 4 GLN E 61 O 87.1 95.6 91.7 REMARK 620 5 HOH E 388 O 130.8 82.6 157.6 84.1 REMARK 620 6 HOH E 431 O 144.7 163.5 74.2 92.6 84.0 REMARK 620 7 HOH E 447 O 90.0 84.0 85.4 176.5 99.3 88.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 318 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD1 REMARK 620 2 GLU E 177 OE1 74.3 REMARK 620 3 GLU E 177 OE2 120.0 46.0 REMARK 620 4 ASP E 185 OD2 162.7 122.5 77.2 REMARK 620 5 GLU E 187 O 82.1 139.9 146.2 81.6 REMARK 620 6 GLU E 190 OE1 82.9 127.1 125.0 88.8 80.0 REMARK 620 7 GLU E 190 OE2 97.7 84.6 74.8 88.8 131.0 51.7 REMARK 620 8 HOH E 335 O 94.7 77.2 79.5 85.8 73.0 152.9 154.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 322 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 101.1 REMARK 620 3 GLU E 166 OE1 128.2 97.9 REMARK 620 4 GLU E 166 OE2 81.3 134.6 52.2 REMARK 620 5 RDF E 317 O1P 115.8 114.1 98.9 104.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 319 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 ASN E 183 O 85.7 REMARK 620 3 ASP E 185 OD1 88.4 87.8 REMARK 620 4 GLU E 190 OE2 89.7 166.7 79.6 REMARK 620 5 HOH E 342 O 91.7 95.9 176.2 96.7 REMARK 620 6 HOH E 424 O 176.9 95.4 94.6 89.8 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 321 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 OG1 83.1 REMARK 620 3 THR E 194 O 77.2 63.6 REMARK 620 4 ILE E 197 O 141.8 104.6 73.5 REMARK 620 5 ASP E 200 OD1 129.2 76.5 129.3 88.6 REMARK 620 6 HOH E 343 O 83.5 131.3 154.1 114.5 76.5 REMARK 620 7 HOH E 429 O 83.4 142.5 79.3 67.7 137.0 81.4 REMARK 620 N 1 2 3 4 5 6 REMARK 630 REMARK 630 MOLECULE TYPE: GLYCOPEPTIDE ENZYME INHIBITOR REMARK 630 MOLECULE NAME: N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L- REMARK 630 LEUCYL-L-TRYPTOPHAN REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 RDF E 317 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: RHA LEU TRP REMARK 630 DETAILS: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE *ACTIVE-SITE* SHEET SUBSTRUCTURE OF THIS MOLECULE HAS REMARK 700 ONE EDGE-STRAND COMPRISED OF TWO DISTINCT SEQUENCES OF THE REMARK 700 POLYPEPTIDE CHAIN. TO REPRESENT THIS FEATURE AN EXTRA REMARK 700 SHEET IS DEFINED. STRANDS 2,3,4,5 OF S1 ARE IDENTICAL TO REMARK 700 STRANDS 2,3,4,5 OF S2. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RDF E 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 322 DBREF 1TLP E 1 316 UNP P00800 THER_BACTH 1 316 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET RDF E 317 37 HET CA E 318 1 HET CA E 319 1 HET CA E 320 1 HET CA E 321 1 HET ZN E 322 1 HETNAM RDF N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L- HETNAM 2 RDF LEUCYL-L-TRYPTOPHAN HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETSYN RDF PHOSPHORAMIDON FORMUL 2 RDF C23 H34 N3 O10 P FORMUL 3 CA 4(CA 2+) FORMUL 7 ZN ZN 2+ FORMUL 8 HOH *163(H2 O) HELIX 1 H1 SER E 65 VAL E 87 165,66 3/10 OR ALPHA-II CONFN 23 HELIX 2 H2 LEU E 133 GLY E 135 5 3 HELIX 3 H3 ILE E 137 ASP E 150 1151 IN ALPHA-II CONFORMATION 14 HELIX 4 H4 GLU E 160 ALA E 180 1180 IN 3/10 CONFORMATION 21 HELIX 5 H5 GLU E 190 VAL E 192 1192 IN 3/10 OR ALPHA-II CONFN 3 HELIX 6 H6 PRO E 208 TYR E 211 5 4 HELIX 7 H7 TYR E 217 LYS E 219 5 3 HELIX 8 H8 ASP E 226 GLY E 229 6LEFT-HAND ALPHA HELIX 4 HELIX 9 H9 ASN E 233 GLN E 246 1233,234 IN 3/10 CONFORMATION 14 HELIX 10 H10 ARG E 260 TYR E 274 1262 IN ALPHA-II CONFORMATION 15 HELIX 11 H11 PHE E 281 TYR E 296 1 16 HELIX 12 H12 GLN E 301 VAL E 313 1313 IN 3/10 CONFORMATION 13 SHEET 1 S1 5 GLN E 31 ASP E 32 0 SHEET 2 S1 5 ILE E 39 ASP E 43 -1 N ILE E 39 O ASP E 32 SHEET 3 S1 5 ILE E 100 TYR E 106 1 N SER E 102 O PHE E 40 SHEET 4 S1 5 GLU E 119 TYR E 122 1 N TYR E 122 O SER E 103 SHEET 5 S1 5 ASN E 112 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 S2 5 GLY E 52 LEU E 54 0 SHEET 2 S2 5 ILE E 39 ASP E 43 -1 N ASP E 43 O SER E 53 SHEET 3 S2 5 ILE E 100 TYR E 106 1 N SER E 102 O PHE E 40 SHEET 4 S2 5 GLU E 119 TYR E 122 1 N TYR E 122 O SER E 103 SHEET 5 S2 5 ASN E 112 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 S3 5 TRP E 55 ASP E 57 0 SHEET 2 S3 5 TYR E 27 TYR E 29 -1 O TYR E 28 N ASP E 57 SHEET 3 S3 5 ASP E 16 SER E 25 -1 O THR E 23 N TYR E 29 SHEET 4 S3 5 THR E 2 ARG E 11 -1 O THR E 6 N THR E 22 SHEET 5 S3 5 GLN E 61 PHE E 62 1 O VAL E 9 N PHE E 62 LINK OD2 ASP E 57 CA CA E 320 1555 1555 2.80 LINK OD1 ASP E 57 CA CA E 320 1555 1555 2.34 LINK OD1 ASP E 59 CA CA E 320 1555 1555 2.32 LINK O GLN E 61 CA CA E 320 1555 1555 2.24 LINK OD1 ASP E 138 CA CA E 318 1555 1555 2.44 LINK NE2 HIS E 142 ZN ZN E 322 1555 1555 2.22 LINK NE2 HIS E 146 ZN ZN E 322 1555 1555 2.19 LINK OE1 GLU E 166 ZN ZN E 322 1555 1555 1.95 LINK OE2 GLU E 166 ZN ZN E 322 1555 1555 2.68 LINK OE1 GLU E 177 CA CA E 318 1555 1555 2.73 LINK OE2 GLU E 177 CA CA E 318 1555 1555 2.87 LINK OE2 GLU E 177 CA CA E 319 1555 1555 2.35 LINK O ASN E 183 CA CA E 319 1555 1555 2.51 LINK OD2 ASP E 185 CA CA E 318 1555 1555 2.45 LINK OD1 ASP E 185 CA CA E 319 1555 1555 2.45 LINK O GLU E 187 CA CA E 318 1555 1555 2.34 LINK OE1 GLU E 190 CA CA E 318 1555 1555 2.50 LINK OE2 GLU E 190 CA CA E 318 1555 1555 2.58 LINK OE2 GLU E 190 CA CA E 319 1555 1555 2.35 LINK O TYR E 193 CA CA E 321 1555 1555 2.54 LINK OG1 THR E 194 CA CA E 321 1555 1555 2.41 LINK O THR E 194 CA CA E 321 1555 1555 2.47 LINK O ILE E 197 CA CA E 321 1555 1555 2.29 LINK OD1 ASP E 200 CA CA E 321 1555 1555 2.24 LINK O1P RDF E 317 ZN ZN E 322 1555 1555 1.75 LINK CA CA E 318 O HOH E 335 1555 1555 2.67 LINK CA CA E 319 O HOH E 342 1555 1555 2.22 LINK CA CA E 319 O HOH E 424 1555 1555 2.29 LINK CA CA E 320 O HOH E 388 1555 1555 2.39 LINK CA CA E 320 O HOH E 431 1555 1555 2.44 LINK CA CA E 320 O HOH E 447 1555 1555 2.33 LINK CA CA E 321 O HOH E 343 1555 1555 2.60 LINK CA CA E 321 O HOH E 429 1555 1555 2.36 CISPEP 1 LEU E 50 PRO E 51 0 -0.95 SITE 1 AC1 14 ASN E 111 ASN E 112 ALA E 113 PHE E 114 SITE 2 AC1 14 PHE E 130 HIS E 142 GLU E 143 HIS E 146 SITE 3 AC1 14 TYR E 157 GLU E 166 ARG E 203 HIS E 231 SITE 4 AC1 14 ZN E 322 HOH E 485 SITE 1 AC2 6 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC2 6 GLU E 190 HOH E 335 SITE 1 AC3 6 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC3 6 HOH E 342 HOH E 424 SITE 1 AC4 6 ASP E 57 ASP E 59 GLN E 61 HOH E 388 SITE 2 AC4 6 HOH E 431 HOH E 447 SITE 1 AC5 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC5 6 HOH E 343 HOH E 429 SITE 1 AC6 5 HIS E 142 HIS E 146 TYR E 157 GLU E 166 SITE 2 AC6 5 RDF E 317 CRYST1 94.100 94.100 131.400 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 0.866025 0.500000 0.000000 0.00000 ORIGX2 -0.500000 0.866025 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010627 0.006135 0.000000 0.00000 SCALE2 0.000000 0.012271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007610 0.00000