HEADER HYDROLASE 02-NOV-98 1TLX TITLE THERMOLYSIN (NATIVE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYDROLASE (METALLOPROTEASE); COMPND 5 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS HYDROLASE, METALLOPROTEINASE, ORGANIC SOLVENT EXPDTA X-RAY DIFFRACTION AUTHOR A.C.ENGLISH,S.H.DONE,C.R.GROOM,R.E.HUBBARD REVDAT 5 13-MAR-24 1TLX 1 SOURCE REVDAT 4 27-DEC-23 1TLX 1 REMARK LINK REVDAT 3 24-FEB-09 1TLX 1 VERSN REVDAT 2 01-APR-03 1TLX 1 JRNL REVDAT 1 13-MAR-00 1TLX 0 JRNL AUTH A.C.ENGLISH,S.H.DONE,L.S.CAVES,C.R.GROOM,R.E.HUBBARD JRNL TITL LOCATING INTERACTION SITES ON PROTEINS: THE CRYSTAL JRNL TITL 2 STRUCTURE OF THERMOLYSIN SOAKED IN 2% TO 100% ISOPROPANOL. JRNL REF PROTEINS V. 37 628 1999 JRNL REFN ISSN 0887-3585 JRNL PMID 10651278 JRNL DOI 10.1002/(SICI)1097-0134(19991201)37:4<628::AID-PROT13>3.3.CO JRNL DOI 2 ;2-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.R.HOLLAND,A.C.HAUSRATH,D.JUERS,B.W.MATTHEWS REMARK 1 TITL STRUCTURAL ANALYSIS OF ZINC SUBSTITUTIONS IN THE ACTIVE SITE REMARK 1 TITL 2 OF THERMOLYSIN REMARK 1 REF PROTEIN SCI. V. 4 1955 1995 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.A.HOLMES,B.W.MATTHEWS REMARK 1 TITL STRUCTURE OF THERMOLYSIN REFINED AT 1.6 ANGSTROM RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 4 623 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 19215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.500 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.014 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.035 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.040 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.136 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.184 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.352 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.140 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 4.600 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 17.700; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 22.400; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.801 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.070 ; 5.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.473 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.786 ; 10.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS ENTRY FORMS PART OF A SERIES OF STRUCTURES GENERATED REMARK 3 FROM SOAKING CRYSTALS OF THERMOLYSIN IN ORGANIC SOLVENTS/ REMARK 3 SOLUTES. THIS ENTRY WAS USED AS THE INITIAL MODEL FOR THE REMARK 3 REFINEMENT OF THESE STRUCTURES. REMARK 4 REMARK 4 1TLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-98. REMARK 100 THE DEPOSITION ID IS D_1000000020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-96 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20252 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 14.90 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.72333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.44667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.58500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.30833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.86167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.72333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.44667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 109.30833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.58500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.86167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE ACTIVE SITE CLEFT OF THERMOLYSIN CONTAINS AT LEAST FOUR REMARK 400 SUBSITES S1, S1(PRIME), S2, AND S2(PRIME). REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 157 OE2 GLU A 166 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 11 NH1 - CZ - NH2 ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG A 11 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 11 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 47 CD - NE - CZ ANGL. DEV. = 14.4 DEGREES REMARK 500 ASP A 57 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 59 CB - CG - OD2 ANGL. DEV. = 11.4 DEGREES REMARK 500 ASN A 60 CA - C - N ANGL. DEV. = 15.1 DEGREES REMARK 500 ASN A 60 O - C - N ANGL. DEV. = -17.3 DEGREES REMARK 500 GLN A 61 C - N - CA ANGL. DEV. = 18.8 DEGREES REMARK 500 ASP A 82 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR A 93 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 94 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 TYR A 106 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 MET A 120 CA - CB - CG ANGL. DEV. = -10.7 DEGREES REMARK 500 ASP A 124 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 138 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 GLU A 166 OE1 - CD - OE2 ANGL. DEV. = -23.6 DEGREES REMARK 500 GLU A 166 CG - CD - OE2 ANGL. DEV. = 16.9 DEGREES REMARK 500 ASP A 170 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 GLU A 190 OE1 - CD - OE2 ANGL. DEV. = -10.7 DEGREES REMARK 500 ILE A 197 CA - C - N ANGL. DEV. = 17.9 DEGREES REMARK 500 ASP A 200 CB - CG - OD1 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP A 200 CB - CG - OD2 ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 GLN A 225 O - C - N ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 78.19 -163.13 REMARK 500 THR A 26 -63.95 81.49 REMARK 500 PHE A 62 73.43 -107.60 REMARK 500 SER A 92 -172.38 61.96 REMARK 500 SER A 107 -159.68 57.97 REMARK 500 ASN A 111 49.72 -94.44 REMARK 500 THR A 152 -98.29 -117.63 REMARK 500 ASN A 159 -150.34 54.23 REMARK 500 THR A 194 77.57 37.90 REMARK 500 ASP A 207 79.12 -150.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 25 11.94 REMARK 500 GLN A 61 15.63 REMARK 500 ASN A 89 -12.87 REMARK 500 GLN A 225 -10.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 RESIDUES 317 AND 318 FORM A DIPEPTIDE (VAL-LYS) BOUND IN THE ACTIVE REMARK 600 SITE OF THE MOLECULE. IT IS PRESUMED THAT THE ORIGIN OF THIS REMARK 600 DIPEPTIDE IS THE C-TERMINAL TWO RESIDUES OF THE PROTEIN. SINCE THE REMARK 600 C-TERMINUS APPEARS AT FULL OCCUPANCY, MOLECULES NOT INCORPORATED REMARK 600 INTO THE CRYSTAL MUST HAVE BEEN SACRIFICED. THE NATIVE ENZYME HAS A REMARK 600 VAL-LYS DIPEPTIDE BOUND IN THE ACTIVE SITE. IT IS PRESUMED THAT THE REMARK 600 ORIGIN OF THIS DIPEPTIDE IS THE C-TERMINAL TWO RESIDUES OF THE REMARK 600 PROTEIN. SINCE THE C-TERMINUS APPEARS AT FULL OCCUPANCY, MOLECULES REMARK 600 NOT INCORPORATED INTO THE CRYSTAL MUST HAVE BEEN SACRIFICED. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 46.7 REMARK 620 3 ASP A 59 OD1 73.0 118.9 REMARK 620 4 GLN A 61 O 94.7 99.6 92.4 REMARK 620 5 HOH A1016 O 88.4 83.0 87.8 176.8 REMARK 620 6 HOH A1027 O 127.5 81.3 159.6 86.5 92.2 REMARK 620 7 HOH A1047 O 153.6 153.3 82.2 95.2 81.7 77.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 80.5 REMARK 620 3 GLU A 177 OE2 125.0 44.6 REMARK 620 4 ASP A 185 OD1 157.5 121.7 77.4 REMARK 620 5 GLU A 187 O 84.0 147.0 142.0 75.1 REMARK 620 6 GLU A 190 OE1 84.5 130.7 125.8 82.7 75.8 REMARK 620 7 GLU A 190 OE2 95.6 89.1 83.3 88.6 121.4 46.0 REMARK 620 8 HOH A1014 O 97.3 75.9 74.9 86.1 77.6 153.0 158.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 104.7 REMARK 620 3 GLU A 166 OE2 139.6 91.9 REMARK 620 4 GLU A 166 OE1 91.0 121.5 49.6 REMARK 620 5 HOH A1002 O 96.1 93.0 119.9 141.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 86.5 REMARK 620 3 ASP A 185 OD2 92.1 92.2 REMARK 620 4 GLU A 190 OE2 94.5 174.5 82.3 REMARK 620 5 HOH A1013 O 170.7 95.7 96.8 84.2 REMARK 620 6 HOH A1030 O 84.3 93.2 173.3 92.3 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 OG1 74.1 REMARK 620 3 THR A 194 O 73.7 66.2 REMARK 620 4 ILE A 197 O 153.7 107.2 82.8 REMARK 620 5 ASP A 200 OD1 122.4 79.1 136.3 82.9 REMARK 620 6 HOH A1038 O 81.8 146.1 84.5 84.5 134.6 REMARK 620 7 HOH A1065 O 86.6 130.8 149.5 109.3 74.0 69.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VAL A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2TLX RELATED DB: PDB REMARK 900 RELATED ID: 1TLI RELATED DB: PDB REMARK 900 RELATED ID: 2TLI RELATED DB: PDB REMARK 900 RELATED ID: 3TLI RELATED DB: PDB REMARK 900 RELATED ID: 4TLI RELATED DB: PDB REMARK 900 RELATED ID: 5TLI RELATED DB: PDB REMARK 900 RELATED ID: 6TLI RELATED DB: PDB REMARK 900 RELATED ID: 7TLI RELATED DB: PDB REMARK 900 RELATED ID: 8TLI RELATED DB: PDB DBREF 1TLX A 1 316 UNP P00800 THER_BACTH 1 316 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET VAL A 317 7 HET LYS A 318 10 HET ZN A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HET DMS A1000 4 HETNAM VAL VALINE HETNAM LYS LYSINE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 VAL C5 H11 N O2 FORMUL 3 LYS C6 H15 N2 O2 1+ FORMUL 4 ZN ZN 2+ FORMUL 5 CA 4(CA 2+) FORMUL 9 DMS C2 H6 O S FORMUL 10 HOH *146(H2 O) HELIX 1 1 SER A 65 HIS A 88 5 24 HELIX 2 2 LEU A 133 GLY A 135 5 3 HELIX 3 3 ILE A 137 TYR A 151 1 15 HELIX 4 4 ASN A 159 ALA A 180 1 22 HELIX 5 5 PRO A 208 TYR A 211 5 4 HELIX 6 6 TYR A 217 LYS A 219 5 3 HELIX 7 7 GLN A 225 GLY A 229 1 5 HELIX 8 8 ASN A 233 GLN A 246 5 14 HELIX 9 9 ARG A 260 GLN A 273 1 14 HELIX 10 10 PHE A 281 TYR A 296 1 16 HELIX 11 11 GLN A 301 ALA A 312 1 12 SHEET 1 A 3 THR A 4 ARG A 11 0 SHEET 2 A 3 GLN A 17 SER A 25 0 SHEET 3 A 3 TYR A 27 TYR A 29 -1 N TYR A 29 O THR A 23 SHEET 1 B 2 ILE A 39 ASP A 43 0 SHEET 2 B 2 ILE A 100 VAL A 104 0 SHEET 1 C 2 ALA A 113 TRP A 115 0 SHEET 2 C 2 MET A 120 TYR A 122 0 SHEET 1 D 2 GLY A 248 HIS A 250 0 SHEET 2 D 2 VAL A 253 VAL A 255 0 LINK C VAL A 317 N LYS A 318 1555 1555 1.35 LINK OD1 ASP A 57 CA CA A 404 1555 1555 2.73 LINK OD2 ASP A 57 CA CA A 404 1555 1555 2.66 LINK OD1 ASP A 59 CA CA A 404 1555 1555 2.62 LINK O GLN A 61 CA CA A 404 1555 1555 2.50 LINK OD2 ASP A 138 CA CA A 402 1555 1555 2.61 LINK NE2 HIS A 142 ZN ZN A 401 1555 1555 2.02 LINK NE2 HIS A 146 ZN ZN A 401 1555 1555 1.99 LINK OE2 GLU A 166 ZN ZN A 401 1555 1555 2.27 LINK OE1 GLU A 166 ZN ZN A 401 1555 1555 2.24 LINK OE1 GLU A 177 CA CA A 402 1555 1555 2.67 LINK OE2 GLU A 177 CA CA A 402 1555 1555 2.98 LINK OE2 GLU A 177 CA CA A 403 1555 1555 2.56 LINK O ASN A 183 CA CA A 403 1555 1555 2.63 LINK OD1 ASP A 185 CA CA A 402 1555 1555 2.69 LINK OD2 ASP A 185 CA CA A 403 1555 1555 2.52 LINK O GLU A 187 CA CA A 402 1555 1555 2.59 LINK OE1 GLU A 190 CA CA A 402 1555 1555 2.67 LINK OE2 GLU A 190 CA CA A 402 1555 1555 2.69 LINK OE2 GLU A 190 CA CA A 403 1555 1555 2.57 LINK O TYR A 193 CA CA A 405 1555 1555 2.68 LINK OG1 THR A 194 CA CA A 405 1555 1555 2.70 LINK O THR A 194 CA CA A 405 1555 1555 2.68 LINK O ILE A 197 CA CA A 405 1555 1555 2.69 LINK OD1 ASP A 200 CA CA A 405 1555 1555 2.59 LINK ZN ZN A 401 O HOH A1002 1555 1555 2.05 LINK CA CA A 402 O HOH A1014 1555 1555 2.57 LINK CA CA A 403 O HOH A1013 1555 1555 2.41 LINK CA CA A 403 O HOH A1030 1555 1555 2.65 LINK CA CA A 404 O HOH A1016 1555 1555 2.44 LINK CA CA A 404 O HOH A1027 1555 1555 2.75 LINK CA CA A 404 O HOH A1047 1555 1555 2.69 LINK CA CA A 405 O HOH A1038 1555 1555 2.80 LINK CA CA A 405 O HOH A1065 1555 1555 2.72 CISPEP 1 LEU A 50 PRO A 51 0 4.61 SITE 1 AC1 5 ASN A 112 ALA A 113 GLU A 143 ARG A 203 SITE 2 AC1 5 LYS A 318 SITE 1 AC2 5 ASN A 111 ASN A 112 LEU A 202 VAL A 317 SITE 2 AC2 5 HOH A1146 SITE 1 AC3 5 HIS A 142 HIS A 146 GLU A 166 HOH A1001 SITE 2 AC3 5 HOH A1002 SITE 1 AC4 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC4 6 GLU A 190 HOH A1014 SITE 1 AC5 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC5 6 HOH A1013 HOH A1030 SITE 1 AC6 6 ASP A 57 ASP A 59 GLN A 61 HOH A1016 SITE 2 AC6 6 HOH A1027 HOH A1047 SITE 1 AC7 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC7 6 HOH A1038 HOH A1065 SITE 1 AC8 2 HIS A 216 SER A 218 CRYST1 93.910 93.910 131.170 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010648 0.006148 0.000000 0.00000 SCALE2 0.000000 0.012296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007624 0.00000