HEADER OXIDOREDUCTASE 11-JUN-04 1TMX TITLE CRYSTAL STRUCTURE OF HYDROXYQUINOL 1,2-DIOXYGENASE FROM NOCARDIOIDES TITLE 2 SIMPLEX 3E COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYQUINOL 1,2-DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.13.11.37 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PIMELOBACTER SIMPLEX; SOURCE 3 ORGANISM_TAXID: 2045; SOURCE 4 STRAIN: 3E KEYWDS BETA BARREL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FERRARONI,V.M.TRAVKIN,J.SEIFERT,M.SCHLOMANN,L.GOLOVLEVA, AUTHOR 2 A.SCOZZAFAVA,F.BRIGANTI REVDAT 5 14-FEB-24 1TMX 1 REMARK LINK REVDAT 4 11-OCT-17 1TMX 1 REMARK REVDAT 3 24-FEB-09 1TMX 1 VERSN REVDAT 2 19-JUL-05 1TMX 1 JRNL REVDAT 1 22-MAR-05 1TMX 0 JRNL AUTH M.FERRARONI,J.SEIFERT,V.M.TRAVKIN,M.THIEL,S.KASCHABEK, JRNL AUTH 2 A.SCOZZAFAVA,L.GOLOVLEVA,M.SCHLOMANN,F.BRIGANTI JRNL TITL CRYSTAL STRUCTURE OF THE HYDROXYQUINOL 1,2-DIOXYGENASE FROM JRNL TITL 2 NOCARDIOIDES SIMPLEX 3E, A KEY ENZYME INVOLVED IN JRNL TITL 3 POLYCHLORINATED AROMATICS BIODEGRADATION. JRNL REF J.BIOL.CHEM. V. 280 21144 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15772073 JRNL DOI 10.1074/JBC.M500666200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 56787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3701 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4399 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 831 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.84000 REMARK 3 B33 (A**2) : -1.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.55000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.890 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4629 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6278 ; 1.581 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 575 ; 6.418 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 673 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3623 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2405 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 652 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.033 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2878 ; 1.002 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4611 ; 1.678 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1751 ; 2.606 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1667 ; 4.059 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-01; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG; ESRF REMARK 200 BEAMLINE : X11; BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908; 1.738,1.741,1.001 REMARK 200 MONOCHROMATOR : TRIANGULAR; NULL REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61454 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.11600 REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG 400, HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.48900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 ALA B 267 REMARK 465 GLY B 268 REMARK 465 ARG B 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 2 N CB OG REMARK 470 GLU A 73 CB CG CD OE1 OE2 REMARK 470 ARG A 207 CD NE CZ NH1 NH2 REMARK 470 GLU A 244 OE1 OE2 REMARK 470 ARG A 264 CZ NH1 NH2 REMARK 470 ARG A 285 CZ NH1 NH2 REMARK 470 GLU B 8 CD OE1 OE2 REMARK 470 THR B 71 CB OG1 CG2 REMARK 470 ASN B 72 CB CG OD1 ND2 REMARK 470 GLU B 73 CB CG CD OE1 OE2 REMARK 470 ARG B 75 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 264 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 266 CG CD REMARK 470 ALA B 269 CB REMARK 470 GLU B 276 CB CG CD OE1 OE2 REMARK 470 ILE B 277 CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 184 O HOH A 1310 1.97 REMARK 500 O HOH A 1312 O HOH B 1322 2.15 REMARK 500 O HOH A 1266 O HOH B 1055 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 247 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 19 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 19 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP B 66 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 202 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 72 -157.54 -148.08 REMARK 500 ALA A 191 -159.71 -145.50 REMARK 500 ARG A 248 30.20 -146.31 REMARK 500 THR B 71 113.77 71.32 REMARK 500 GLU B 73 62.79 137.64 REMARK 500 ARG B 74 -42.35 84.30 REMARK 500 ALA B 191 -158.40 -138.30 REMARK 500 ARG B 248 44.99 -144.53 REMARK 500 ILE B 277 -164.75 -79.97 REMARK 500 ASP B 278 -157.96 -147.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 278 GLY B 279 -146.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 HGX A 851 REMARK 610 HGX B 852 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 871 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 42 ND1 REMARK 620 2 CL A 891 CL 91.9 REMARK 620 3 HIS B 42 ND1 168.4 99.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 861 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 164 OH REMARK 620 2 TYR A 197 OH 100.4 REMARK 620 3 HIS A 221 NE2 103.6 95.5 REMARK 620 4 HIS A 223 NE2 86.4 171.1 88.6 REMARK 620 5 BEZ A 881 O1 167.6 81.8 88.3 90.3 REMARK 620 6 BEZ A 881 O2 111.4 80.8 144.9 91.3 56.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 862 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 164 OH REMARK 620 2 TYR B 197 OH 99.3 REMARK 620 3 HIS B 221 NE2 99.0 94.7 REMARK 620 4 HIS B 223 NE2 92.4 165.2 92.2 REMARK 620 5 BEZ B 882 O2 117.2 76.2 143.6 90.5 REMARK 620 6 BEZ B 882 O1 172.0 79.5 89.0 87.6 54.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 861 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 862 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 871 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 891 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HGX A 851 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HGX B 852 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ A 881 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ B 882 DBREF 1TMX A 1 239 UNP Q5PXQ6 Q5PXQ6_NOCSI 1 239 DBREF 1TMX B 1 293 PDB 1TMX 1TMX 1 293 SEQRES 1 A 293 MET SER THR PRO VAL SER ALA GLU GLN GLN ALA ARG GLU SEQRES 2 A 293 GLN ASP LEU VAL GLU ARG VAL LEU ARG SER PHE ASP ALA SEQRES 3 A 293 THR ALA ASP PRO ARG LEU LYS GLN VAL MET GLN ALA LEU SEQRES 4 A 293 THR ARG HIS LEU HIS ALA PHE LEU ARG GLU VAL ARG LEU SEQRES 5 A 293 THR GLU ALA GLU TRP GLU THR GLY ILE GLY PHE LEU THR SEQRES 6 A 293 ASP ALA GLY HIS VAL THR ASN GLU ARG ARG GLN GLU PHE SEQRES 7 A 293 ILE LEU LEU SER ASP VAL LEU GLY ALA SER MET GLN THR SEQRES 8 A 293 ILE ALA MET ASN ASN GLU ALA HIS GLY ASP ALA THR GLU SEQRES 9 A 293 ALA THR VAL PHE GLY PRO PHE PHE VAL GLU GLY SER PRO SEQRES 10 A 293 ARG ILE GLU SER GLY GLY ASP ILE ALA GLY GLY ALA ALA SEQRES 11 A 293 GLY GLU PRO CYS TRP VAL GLU GLY THR VAL THR ASP THR SEQRES 12 A 293 ASP GLY ASN PRO VAL PRO ASP ALA ARG ILE GLU VAL TRP SEQRES 13 A 293 GLU ALA ASP ASP ASP GLY PHE TYR ASP VAL GLN TYR ASP SEQRES 14 A 293 ASP ASP ARG THR ALA ALA ARG ALA HIS LEU LEU SER GLY SEQRES 15 A 293 PRO ASP GLY GLY TYR ALA PHE TRP ALA ILE THR PRO THR SEQRES 16 A 293 PRO TYR PRO ILE PRO HIS ASP GLY PRO VAL GLY ARG MET SEQRES 17 A 293 LEU ALA ALA THR GLY ARG SER PRO MET ARG ALA SER HIS SEQRES 18 A 293 LEU HIS PHE MET VAL THR ALA PRO GLY ARG ARG THR LEU SEQRES 19 A 293 VAL THR HIS ILE PHE VAL GLU GLY ASP GLU LEU LEU ASP SEQRES 20 A 293 ARG ASP SER VAL PHE GLY VAL LYS ASP SER LEU VAL LYS SEQRES 21 A 293 SER PHE GLU ARG GLN PRO ALA GLY ALA PRO THR PRO GLY SEQRES 22 A 293 GLY ARG GLU ILE ASP GLY PRO TRP SER ARG VAL ARG PHE SEQRES 23 A 293 ASP ILE VAL LEU ALA PRO ALA SEQRES 1 B 293 MET SER THR PRO VAL SER ALA GLU GLN GLN ALA ARG GLU SEQRES 2 B 293 GLN ASP LEU VAL GLU ARG VAL LEU ARG SER PHE ASP ALA SEQRES 3 B 293 THR ALA ASP PRO ARG LEU LYS GLN VAL MET GLN ALA LEU SEQRES 4 B 293 THR ARG HIS LEU HIS ALA PHE LEU ARG GLU VAL ARG LEU SEQRES 5 B 293 THR GLU ALA GLU TRP GLU THR GLY ILE GLY PHE LEU THR SEQRES 6 B 293 ASP ALA GLY HIS VAL THR ASN GLU ARG ARG GLN GLU PHE SEQRES 7 B 293 ILE LEU LEU SER ASP VAL LEU GLY ALA SER MET GLN THR SEQRES 8 B 293 ILE ALA MET ASN ASN GLU ALA HIS GLY ASP ALA THR GLU SEQRES 9 B 293 ALA THR VAL PHE GLY PRO PHE PHE VAL GLU GLY SER PRO SEQRES 10 B 293 ARG ILE GLU SER GLY GLY ASP ILE ALA GLY GLY ALA ALA SEQRES 11 B 293 GLY GLU PRO CYS TRP VAL GLU GLY THR VAL THR ASP THR SEQRES 12 B 293 ASP GLY ASN PRO VAL PRO ASP ALA ARG ILE GLU VAL TRP SEQRES 13 B 293 GLU ALA ASP ASP ASP GLY PHE TYR ASP VAL GLN TYR ASP SEQRES 14 B 293 ASP ASP ARG THR ALA ALA ARG ALA HIS LEU LEU SER GLY SEQRES 15 B 293 PRO ASP GLY GLY TYR ALA PHE TRP ALA ILE THR PRO THR SEQRES 16 B 293 PRO TYR PRO ILE PRO HIS ASP GLY PRO VAL GLY ARG MET SEQRES 17 B 293 LEU ALA ALA THR GLY ARG SER PRO MET ARG ALA SER HIS SEQRES 18 B 293 LEU HIS PHE MET VAL THR ALA PRO GLY ARG ARG THR LEU SEQRES 19 B 293 VAL THR HIS ILE PHE VAL GLU GLY ASP GLU LEU LEU ASP SEQRES 20 B 293 ARG ASP SER VAL PHE GLY VAL LYS ASP SER LEU VAL LYS SEQRES 21 B 293 SER PHE GLU ARG GLN PRO ALA GLY ALA PRO THR PRO GLY SEQRES 22 B 293 GLY ARG GLU ILE ASP GLY PRO TRP SER ARG VAL ARG PHE SEQRES 23 B 293 ASP ILE VAL LEU ALA PRO ALA HET FE A 861 1 HET CU A 871 1 HET CL A 891 1 HET SO4 A 902 5 HET HGX A 851 37 HET BEZ A 881 9 HET FE B 862 1 HET SO4 B 901 5 HET HGX B 852 38 HET BEZ B 882 9 HETNAM FE FE (III) ION HETNAM CU COPPER (II) ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM HGX 1-HEPTADECANOYL-2-TRIDECANOYL-3-GLYCEROL-PHOSPHONYL HETNAM 2 HGX CHOLINE HETNAM BEZ BENZOIC ACID FORMUL 3 FE 2(FE 3+) FORMUL 4 CU CU 2+ FORMUL 5 CL CL 1- FORMUL 6 SO4 2(O4 S 2-) FORMUL 7 HGX 2(C38 H77 N O8 P 1+) FORMUL 8 BEZ 2(C7 H6 O2) FORMUL 13 HOH *831(H2 O) HELIX 1 1 SER A 6 PHE A 24 1 19 HELIX 2 2 ASP A 29 ARG A 51 1 23 HELIX 3 3 THR A 53 THR A 71 1 19 HELIX 4 4 GLN A 76 LEU A 85 1 10 HELIX 5 5 GLY A 86 ASN A 96 1 11 HELIX 6 6 TYR A 164 TYR A 168 5 5 HELIX 7 7 GLY A 203 THR A 212 1 10 HELIX 8 8 ASP A 243 ARG A 248 5 6 HELIX 9 9 LYS A 255 SER A 257 5 3 HELIX 10 10 THR A 271 ARG A 275 5 5 HELIX 11 11 SER B 6 PHE B 24 1 19 HELIX 12 12 ASP B 29 ARG B 51 1 23 HELIX 13 13 THR B 53 HIS B 69 1 17 HELIX 14 14 GLN B 76 LEU B 85 1 10 HELIX 15 15 GLY B 86 ASN B 96 1 11 HELIX 16 16 TYR B 164 TYR B 168 5 5 HELIX 17 17 GLY B 203 THR B 212 1 10 HELIX 18 18 ASP B 243 ARG B 248 5 6 HELIX 19 19 LYS B 255 SER B 257 5 3 SHEET 1 A 5 GLY A 123 ASP A 124 0 SHEET 2 A 5 GLY A 186 ILE A 192 1 O TRP A 190 N GLY A 123 SHEET 3 A 5 PRO A 133 ASP A 142 -1 N VAL A 136 O PHE A 189 SHEET 4 A 5 TRP A 281 ARG A 285 1 O SER A 282 N TRP A 135 SHEET 5 A 5 GLU A 263 GLN A 265 -1 N GLN A 265 O TRP A 281 SHEET 1 B 4 GLY A 123 ASP A 124 0 SHEET 2 B 4 GLY A 186 ILE A 192 1 O TRP A 190 N GLY A 123 SHEET 3 B 4 PRO A 133 ASP A 142 -1 N VAL A 136 O PHE A 189 SHEET 4 B 4 ILE A 288 LEU A 290 1 O LEU A 290 N THR A 141 SHEET 1 C 5 ARG A 176 LEU A 180 0 SHEET 2 C 5 ARG A 152 TRP A 156 -1 N ILE A 153 O LEU A 179 SHEET 3 C 5 HIS A 221 THR A 227 -1 O MET A 225 N GLU A 154 SHEET 4 C 5 LEU A 234 VAL A 240 -1 O THR A 236 N PHE A 224 SHEET 5 C 5 VAL A 259 LYS A 260 1 O LYS A 260 N PHE A 239 SHEET 1 D 2 TYR A 197 PRO A 198 0 SHEET 2 D 2 MET A 217 ARG A 218 -1 O ARG A 218 N TYR A 197 SHEET 1 E 4 GLY B 186 ILE B 192 0 SHEET 2 E 4 PRO B 133 ASP B 142 -1 N CYS B 134 O ALA B 191 SHEET 3 E 4 SER B 282 ARG B 285 1 O VAL B 284 N TRP B 135 SHEET 4 E 4 GLU B 263 ARG B 264 -1 N GLU B 263 O ARG B 283 SHEET 1 F 3 GLY B 186 ILE B 192 0 SHEET 2 F 3 PRO B 133 ASP B 142 -1 N CYS B 134 O ALA B 191 SHEET 3 F 3 ILE B 288 LEU B 290 1 O ILE B 288 N THR B 141 SHEET 1 G 5 ARG B 176 LEU B 180 0 SHEET 2 G 5 ARG B 152 TRP B 156 -1 N ILE B 153 O LEU B 179 SHEET 3 G 5 HIS B 221 THR B 227 -1 O MET B 225 N GLU B 154 SHEET 4 G 5 LEU B 234 VAL B 240 -1 O THR B 236 N PHE B 224 SHEET 5 G 5 VAL B 259 LYS B 260 1 O LYS B 260 N PHE B 239 SHEET 1 H 2 TYR B 197 PRO B 198 0 SHEET 2 H 2 MET B 217 ARG B 218 -1 O ARG B 218 N TYR B 197 LINK ND1 HIS A 42 CU CU A 871 1555 1555 2.12 LINK OH TYR A 164 FE FE A 861 1555 1555 1.95 LINK OH TYR A 197 FE FE A 861 1555 1555 2.01 LINK NE2 HIS A 221 FE FE A 861 1555 1555 2.11 LINK NE2 HIS A 223 FE FE A 861 1555 1555 2.23 LINK FE FE A 861 O1 BEZ A 881 1555 1555 2.14 LINK FE FE A 861 O2 BEZ A 881 1555 1555 2.59 LINK CU CU A 871 CL CL A 891 1555 1555 2.57 LINK CU CU A 871 ND1 HIS B 42 1555 1555 2.01 LINK OH TYR B 164 FE FE B 862 1555 1555 1.91 LINK OH TYR B 197 FE FE B 862 1555 1555 2.02 LINK NE2 HIS B 221 FE FE B 862 1555 1555 2.18 LINK NE2 HIS B 223 FE FE B 862 1555 1555 2.19 LINK FE FE B 862 O2 BEZ B 882 1555 1555 2.64 LINK FE FE B 862 O1 BEZ B 882 1555 1555 2.31 SITE 1 AC1 5 TYR A 164 TYR A 197 HIS A 221 HIS A 223 SITE 2 AC1 5 BEZ A 881 SITE 1 AC2 5 TYR B 164 TYR B 197 HIS B 221 HIS B 223 SITE 2 AC2 5 BEZ B 882 SITE 1 AC3 3 HIS A 42 CL A 891 HIS B 42 SITE 1 AC4 4 HIS A 42 CU A 871 HOH A1072 HIS B 42 SITE 1 AC5 6 THR B 53 ALA B 55 HOH B 987 HOH B1050 SITE 2 AC5 6 HOH B1112 HOH B1264 SITE 1 AC6 6 LYS A 255 ASP A 256 SER A 257 HOH A 941 SITE 2 AC6 6 HOH A1160 HOH A1207 SITE 1 AC7 7 PHE A 46 GLY A 60 PHE A 63 MET A 208 SITE 2 AC7 7 HOH A1112 VAL B 35 HGX B 852 SITE 1 AC8 9 LEU A 32 HGX A 851 GLU B 56 TRP B 57 SITE 2 AC8 9 THR B 59 PHE B 63 ALA B 211 HOH B1284 SITE 3 AC8 9 HOH B1297 SITE 1 AC9 12 LEU A 80 ASP A 83 GLY A 109 PRO A 110 SITE 2 AC9 12 PHE A 111 TYR A 197 ILE A 199 ARG A 218 SITE 3 AC9 12 HIS A 221 HIS A 223 FE A 861 HOH A 908 SITE 1 BC1 12 ASP B 83 GLY B 109 PRO B 110 PHE B 111 SITE 2 BC1 12 TYR B 197 ILE B 199 ARG B 218 HIS B 221 SITE 3 BC1 12 HIS B 223 VAL B 251 FE B 862 HOH B 948 CRYST1 46.283 84.978 83.923 90.00 92.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021606 0.000000 0.001073 0.00000 SCALE2 0.000000 0.011768 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011930 0.00000