HEADER TRANSFERASE 11-JUN-04 1TN8 TITLE PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A H-RAS PEPTIDE SUBSTRATE TITLE 2 AND A FPP ANALOG AT 2.25A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE COMPND 3 I ALPHA SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: CAAX FARNESYLTRANSFERASE ALPHA SUBUNIT, RAS PROTEINS COMPND 6 PRENYLTRANSFERASE ALPHA, FTASE-ALPHA; COMPND 7 EC: 2.5.1.58; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: CAAX FARNESYLTRANSFERASE BETA SUBUNIT, RAS PROTEINS COMPND 13 PRENYLTRANSFERASE BETA, FTASE-BETA; COMPND 14 EC: 2.5.1.58; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: PEPTIDE DERIVED FROM THE C-TERMINUS OF H-RAS; COMPND 18 CHAIN: C; COMPND 19 ENGINEERED: YES; COMPND 20 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: FNTA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 12 ORGANISM_COMMON: NORWAY RAT; SOURCE 13 ORGANISM_TAXID: 10116; SOURCE 14 GENE: FNTB; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 OTHER_DETAILS: PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF SOURCE 22 THIS PEPTIDE NATURALLY EXISTS IN HOMO SAPIENS(HUMAN). KEYWDS FTASE, FARNESYLTRANSFERASE, FARNESYL TRANSFERASE, PRENYLTRANSFERASE, KEYWDS 2 CAAX, RAS, LIPID MODIFICATION, PRENYLATION, SUBSTRATE SELECTIVITY, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.S.REID,K.L.TERRY,P.J.CASEY,L.S.BEESE REVDAT 3 23-AUG-23 1TN8 1 REMARK LINK REVDAT 2 24-FEB-09 1TN8 1 VERSN REVDAT 1 02-NOV-04 1TN8 0 JRNL AUTH T.S.REID,K.L.TERRY,P.J.CASEY,L.S.BEESE JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF CAAX PRENYLTRANSFERASES JRNL TITL 2 COMPLEXED WITH SUBSTRATES DEFINES RULES OF PROTEIN SUBSTRATE JRNL TITL 3 SELECTIVITY. JRNL REF J.MOL.BIOL. V. 343 417 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15451670 JRNL DOI 10.1016/J.JMB.2004.08.056 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3369332.960 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 53218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2641 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7795 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 376 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.96000 REMARK 3 B22 (A**2) : 3.96000 REMARK 3 B33 (A**2) : -7.92000 REMARK 3 B12 (A**2) : 2.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.130 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.890 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.790 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.730 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 49.33 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ACETATE.PAR REMARK 3 PARAMETER FILE 4 : FII.PAR REMARK 3 PARAMETER FILE 5 : PARAM.ZNK REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ACETATE.TOP REMARK 3 TOPOLOGY FILE 4 : FII.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000022778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE MIRROR OPTICS (MSC) REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55180 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.63100 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1D8D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 8000, 600 MM AMMONIUM ACETATE REMARK 280 PH 5.7, 20 MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.10867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.21733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.66300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.77167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.55433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 VAL A 7 REMARK 465 GLY A 8 REMARK 465 GLU A 9 REMARK 465 SER A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 PRO A 16 REMARK 465 GLY A 17 REMARK 465 GLN A 18 REMARK 465 PRO A 19 REMARK 465 GLU A 20 REMARK 465 GLN A 21 REMARK 465 PRO A 22 REMARK 465 PRO A 23 REMARK 465 PRO A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 PRO A 27 REMARK 465 PRO A 28 REMARK 465 PRO A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 GLN A 32 REMARK 465 GLN A 33 REMARK 465 PRO A 34 REMARK 465 GLN A 35 REMARK 465 GLU A 36 REMARK 465 GLU A 37 REMARK 465 GLU A 38 REMARK 465 MET A 39 REMARK 465 ALA A 40 REMARK 465 ALA A 41 REMARK 465 GLU A 42 REMARK 465 ALA A 43 REMARK 465 GLY A 44 REMARK 465 GLU A 45 REMARK 465 ALA A 46 REMARK 465 ALA A 47 REMARK 465 ALA A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 MET A 51 REMARK 465 ASP A 52 REMARK 465 ASP A 53 REMARK 465 GLY A 54 REMARK 465 MET B 501 REMARK 465 ALA B 502 REMARK 465 SER B 503 REMARK 465 SER B 504 REMARK 465 SER B 505 REMARK 465 SER B 506 REMARK 465 PHE B 507 REMARK 465 THR B 508 REMARK 465 TYR B 509 REMARK 465 TYR B 510 REMARK 465 CYS B 511 REMARK 465 PRO B 512 REMARK 465 PRO B 513 REMARK 465 SER B 514 REMARK 465 SER B 515 REMARK 465 SER B 516 REMARK 465 GLU B 924 REMARK 465 GLU B 925 REMARK 465 CYS B 926 REMARK 465 GLU B 927 REMARK 465 ASP B 928 REMARK 465 ALA B 929 REMARK 465 VAL B 930 REMARK 465 THR B 931 REMARK 465 SER B 932 REMARK 465 ASP B 933 REMARK 465 PRO B 934 REMARK 465 ALA B 935 REMARK 465 THR B 936 REMARK 465 ASP B 937 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 71 -1.81 -59.75 REMARK 500 VAL A 88 40.74 39.10 REMARK 500 ASN A 199 109.55 -57.84 REMARK 500 LEU A 215 50.26 -115.49 REMARK 500 THR A 247 -84.18 -108.23 REMARK 500 ASP A 252 107.98 -58.05 REMARK 500 HIS A 306 29.17 -140.28 REMARK 500 ASN A 325 44.23 -96.58 REMARK 500 GLN A 326 91.12 19.29 REMARK 500 LYS A 330 10.93 -63.44 REMARK 500 GLU A 347 -67.43 -134.61 REMARK 500 ASP A 349 58.31 -162.27 REMARK 500 SER B 539 16.08 56.61 REMARK 500 GLN B 574 61.76 -67.79 REMARK 500 SER B 826 -30.44 -133.96 REMARK 500 MET B 829 48.48 -80.87 REMARK 500 ASP B 852 -70.63 -60.74 REMARK 500 PRO B 921 123.30 -26.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 797 OD1 REMARK 620 2 ASP B 797 OD2 54.5 REMARK 620 3 CYS B 799 SG 106.8 88.4 REMARK 620 4 HIS B 862 NE2 116.1 87.3 122.8 REMARK 620 5 CYS C2006 SG 92.4 145.8 111.9 102.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FII B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 3002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D8D RELATED DB: PDB REMARK 900 CO-CRYSTAL STRUCTURE OF RAS PROTEIN FARNESYLTRANSFERASE COMPLEXED REMARK 900 WITH A K-RAS4B PEPTIDE SUBSTRATE AND FPP ANALOG AT 2.0A RESOLUTION REMARK 900 RELATED ID: 1N4Q RELATED DB: PDB REMARK 900 PROTEIN GERANYLGERANYLTRANSFERASE TYPE-I COMPLEXED WITH A GGPP REMARK 900 ANALOG AND A KKKSKTKCVIL PEPTIDE REMARK 900 RELATED ID: 1QBQ RELATED DB: PDB REMARK 900 STRUCUTRE OF RAT FARNESYL PROTEIN TRANSFERASE COMPLEXED WITH A CVIM REMARK 900 PEPTIDE AND -HYDROXYFARNESYLPHOSPHONIC ACID REMARK 900 RELATED ID: 1FT1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN FARNESYLTRANSFERASE AT 2.25 ANGSTROMS REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1FPP RELATED DB: PDB REMARK 900 PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH FARNESYL DIPHOSPHATE REMARK 900 RELATED ID: 1TN6 RELATED DB: PDB REMARK 900 RELATED ID: 1TN7 RELATED DB: PDB REMARK 900 RELATED ID: 1TNB RELATED DB: PDB REMARK 900 RELATED ID: 1TNO RELATED DB: PDB REMARK 900 RELATED ID: 1TNU RELATED DB: PDB REMARK 900 RELATED ID: 1TNY RELATED DB: PDB REMARK 900 RELATED ID: 1TNZ RELATED DB: PDB DBREF 1TN8 A 1 377 UNP Q04631 PFTA_RAT 1 377 DBREF 1TN8 B 501 937 UNP Q02293 PFTB_RAT 1 437 DBREF 1TN8 C 2005 2009 PDB 1TN8 1TN8 2005 2009 SEQRES 1 A 377 MET ALA ALA THR GLU GLY VAL GLY GLU SER ALA PRO GLY SEQRES 2 A 377 GLY GLU PRO GLY GLN PRO GLU GLN PRO PRO PRO PRO PRO SEQRES 3 A 377 PRO PRO PRO PRO ALA GLN GLN PRO GLN GLU GLU GLU MET SEQRES 4 A 377 ALA ALA GLU ALA GLY GLU ALA ALA ALA SER PRO MET ASP SEQRES 5 A 377 ASP GLY PHE LEU SER LEU ASP SER PRO THR TYR VAL LEU SEQRES 6 A 377 TYR ARG ASP ARG ALA GLU TRP ALA ASP ILE ASP PRO VAL SEQRES 7 A 377 PRO GLN ASN ASP GLY PRO SER PRO VAL VAL GLN ILE ILE SEQRES 8 A 377 TYR SER GLU LYS PHE ARG ASP VAL TYR ASP TYR PHE ARG SEQRES 9 A 377 ALA VAL LEU GLN ARG ASP GLU ARG SER GLU ARG ALA PHE SEQRES 10 A 377 LYS LEU THR ARG ASP ALA ILE GLU LEU ASN ALA ALA ASN SEQRES 11 A 377 TYR THR VAL TRP HIS PHE ARG ARG VAL LEU LEU ARG SER SEQRES 12 A 377 LEU GLN LYS ASP LEU GLN GLU GLU MET ASN TYR ILE ILE SEQRES 13 A 377 ALA ILE ILE GLU GLU GLN PRO LYS ASN TYR GLN VAL TRP SEQRES 14 A 377 HIS HIS ARG ARG VAL LEU VAL GLU TRP LEU LYS ASP PRO SEQRES 15 A 377 SER GLN GLU LEU GLU PHE ILE ALA ASP ILE LEU ASN GLN SEQRES 16 A 377 ASP ALA LYS ASN TYR HIS ALA TRP GLN HIS ARG GLN TRP SEQRES 17 A 377 VAL ILE GLN GLU PHE ARG LEU TRP ASP ASN GLU LEU GLN SEQRES 18 A 377 TYR VAL ASP GLN LEU LEU LYS GLU ASP VAL ARG ASN ASN SEQRES 19 A 377 SER VAL TRP ASN GLN ARG HIS PHE VAL ILE SER ASN THR SEQRES 20 A 377 THR GLY TYR SER ASP ARG ALA VAL LEU GLU ARG GLU VAL SEQRES 21 A 377 GLN TYR THR LEU GLU MET ILE LYS LEU VAL PRO HIS ASN SEQRES 22 A 377 GLU SER ALA TRP ASN TYR LEU LYS GLY ILE LEU GLN ASP SEQRES 23 A 377 ARG GLY LEU SER ARG TYR PRO ASN LEU LEU ASN GLN LEU SEQRES 24 A 377 LEU ASP LEU GLN PRO SER HIS SER SER PRO TYR LEU ILE SEQRES 25 A 377 ALA PHE LEU VAL ASP ILE TYR GLU ASP MET LEU GLU ASN SEQRES 26 A 377 GLN CYS ASP ASN LYS GLU ASP ILE LEU ASN LYS ALA LEU SEQRES 27 A 377 GLU LEU CYS GLU ILE LEU ALA LYS GLU LYS ASP THR ILE SEQRES 28 A 377 ARG LYS GLU TYR TRP ARG TYR ILE GLY ARG SER LEU GLN SEQRES 29 A 377 SER LYS HIS SER ARG GLU SER ASP ILE PRO ALA SER VAL SEQRES 1 B 437 MET ALA SER SER SER SER PHE THR TYR TYR CYS PRO PRO SEQRES 2 B 437 SER SER SER PRO VAL TRP SER GLU PRO LEU TYR SER LEU SEQRES 3 B 437 ARG PRO GLU HIS ALA ARG GLU ARG LEU GLN ASP ASP SER SEQRES 4 B 437 VAL GLU THR VAL THR SER ILE GLU GLN ALA LYS VAL GLU SEQRES 5 B 437 GLU LYS ILE GLN GLU VAL PHE SER SER TYR LYS PHE ASN SEQRES 6 B 437 HIS LEU VAL PRO ARG LEU VAL LEU GLN ARG GLU LYS HIS SEQRES 7 B 437 PHE HIS TYR LEU LYS ARG GLY LEU ARG GLN LEU THR ASP SEQRES 8 B 437 ALA TYR GLU CYS LEU ASP ALA SER ARG PRO TRP LEU CYS SEQRES 9 B 437 TYR TRP ILE LEU HIS SER LEU GLU LEU LEU ASP GLU PRO SEQRES 10 B 437 ILE PRO GLN ILE VAL ALA THR ASP VAL CYS GLN PHE LEU SEQRES 11 B 437 GLU LEU CYS GLN SER PRO ASP GLY GLY PHE GLY GLY GLY SEQRES 12 B 437 PRO GLY GLN TYR PRO HIS LEU ALA PRO THR TYR ALA ALA SEQRES 13 B 437 VAL ASN ALA LEU CYS ILE ILE GLY THR GLU GLU ALA TYR SEQRES 14 B 437 ASN VAL ILE ASN ARG GLU LYS LEU LEU GLN TYR LEU TYR SEQRES 15 B 437 SER LEU LYS GLN PRO ASP GLY SER PHE LEU MET HIS VAL SEQRES 16 B 437 GLY GLY GLU VAL ASP VAL ARG SER ALA TYR CYS ALA ALA SEQRES 17 B 437 SER VAL ALA SER LEU THR ASN ILE ILE THR PRO ASP LEU SEQRES 18 B 437 PHE GLU GLY THR ALA GLU TRP ILE ALA ARG CYS GLN ASN SEQRES 19 B 437 TRP GLU GLY GLY ILE GLY GLY VAL PRO GLY MET GLU ALA SEQRES 20 B 437 HIS GLY GLY TYR THR PHE CYS GLY LEU ALA ALA LEU VAL SEQRES 21 B 437 ILE LEU LYS LYS GLU ARG SER LEU ASN LEU LYS SER LEU SEQRES 22 B 437 LEU GLN TRP VAL THR SER ARG GLN MET ARG PHE GLU GLY SEQRES 23 B 437 GLY PHE GLN GLY ARG CYS ASN LYS LEU VAL ASP GLY CYS SEQRES 24 B 437 TYR SER PHE TRP GLN ALA GLY LEU LEU PRO LEU LEU HIS SEQRES 25 B 437 ARG ALA LEU HIS ALA GLN GLY ASP PRO ALA LEU SER MET SEQRES 26 B 437 SER HIS TRP MET PHE HIS GLN GLN ALA LEU GLN GLU TYR SEQRES 27 B 437 ILE LEU MET CYS CYS GLN CYS PRO ALA GLY GLY LEU LEU SEQRES 28 B 437 ASP LYS PRO GLY LYS SER ARG ASP PHE TYR HIS THR CYS SEQRES 29 B 437 TYR CYS LEU SER GLY LEU SER ILE ALA GLN HIS PHE GLY SEQRES 30 B 437 SER GLY ALA MET LEU HIS ASP VAL VAL MET GLY VAL PRO SEQRES 31 B 437 GLU ASN VAL LEU GLN PRO THR HIS PRO VAL TYR ASN ILE SEQRES 32 B 437 GLY PRO ASP LYS VAL ILE GLN ALA THR THR HIS PHE LEU SEQRES 33 B 437 GLN LYS PRO VAL PRO GLY PHE GLU GLU CYS GLU ASP ALA SEQRES 34 B 437 VAL THR SER ASP PRO ALA THR ASP SEQRES 1 C 5 GLY CYS VAL LEU SER HET ZN B1001 1 HET FII B 1 24 HET ACY B3002 4 HETNAM ZN ZINC ION HETNAM FII [(3,7,11-TRIMETHYL-DODECA-2,6,10-TRIENYLOXYCARBAMOYL)- HETNAM 2 FII METHYL]-PHOSPHONIC ACID HETNAM ACY ACETIC ACID HETSYN FII FPP ANALOG FORMUL 4 ZN ZN 2+ FORMUL 5 FII C17 H30 N O5 P FORMUL 6 ACY C2 H4 O2 FORMUL 7 HOH *314(H2 O) HELIX 1 1 LEU A 65 ALA A 73 5 9 HELIX 2 2 SER A 93 ASP A 110 1 18 HELIX 3 3 SER A 113 ASN A 127 1 15 HELIX 4 4 ASN A 130 LEU A 144 1 15 HELIX 5 5 ASP A 147 GLN A 162 1 16 HELIX 6 6 ASN A 165 LYS A 180 1 16 HELIX 7 7 GLN A 184 ASP A 196 1 13 HELIX 8 8 ASN A 199 ARG A 214 1 16 HELIX 9 9 ASN A 218 ASP A 230 1 13 HELIX 10 10 ASN A 233 THR A 247 1 15 HELIX 11 11 ASP A 252 VAL A 270 1 19 HELIX 12 12 ASN A 273 GLN A 285 1 13 HELIX 13 13 GLY A 288 ARG A 291 5 4 HELIX 14 14 TYR A 292 ASP A 301 1 10 HELIX 15 15 SER A 308 ASN A 325 1 18 HELIX 16 16 GLU A 331 GLU A 347 1 17 HELIX 17 17 ASP A 349 ILE A 351 5 3 HELIX 18 18 ARG A 352 SER A 368 1 17 HELIX 19 19 LEU B 523 ARG B 534 5 12 HELIX 20 20 THR B 542 SER B 560 1 19 HELIX 21 21 SER B 560 HIS B 566 1 7 HELIX 22 22 GLN B 574 LEU B 586 1 13 HELIX 23 23 THR B 590 ASP B 597 5 8 HELIX 24 24 SER B 599 LEU B 614 1 16 HELIX 25 25 PRO B 619 GLN B 634 1 16 HELIX 26 26 HIS B 649 GLY B 664 1 16 HELIX 27 27 THR B 665 ILE B 672 1 8 HELIX 28 28 ASN B 673 LYS B 685 1 13 HELIX 29 29 ASP B 700 THR B 714 1 15 HELIX 30 30 GLY B 724 CYS B 732 1 9 HELIX 31 31 HIS B 748 LEU B 762 1 15 HELIX 32 32 LYS B 764 LEU B 768 5 5 HELIX 33 33 ASN B 769 SER B 779 1 11 HELIX 34 34 CYS B 799 GLN B 804 1 6 HELIX 35 35 GLY B 806 ALA B 817 1 12 HELIX 36 36 HIS B 831 CYS B 843 1 13 HELIX 37 37 ASP B 859 GLN B 874 1 16 HELIX 38 38 VAL B 889 VAL B 893 5 5 HELIX 39 39 GLY B 904 LEU B 916 1 13 SHEET 1 A 2 GLN A 89 ILE A 90 0 SHEET 2 A 2 GLN B 588 LEU B 589 1 O LEU B 589 N GLN A 89 SHEET 1 B 2 HIS B 875 SER B 878 0 SHEET 2 B 2 MET B 881 ASP B 884 -1 O HIS B 883 N PHE B 876 LINK OD1 ASP B 797 ZN ZN B1001 1555 1555 1.99 LINK OD2 ASP B 797 ZN ZN B1001 1555 1555 2.63 LINK SG CYS B 799 ZN ZN B1001 1555 1555 2.27 LINK NE2 HIS B 862 ZN ZN B1001 1555 1555 2.24 LINK ZN ZN B1001 SG CYS C2006 1555 1555 2.38 SITE 1 AC1 4 ASP B 797 CYS B 799 HIS B 862 CYS C2006 SITE 1 AC2 18 LYS A 164 TYR A 166 TYR A 200 HOH A1162 SITE 2 AC2 18 TYR B 705 HIS B 748 GLY B 750 TYR B 751 SITE 3 AC2 18 CYS B 754 ARG B 791 LYS B 794 TYR B 800 SITE 4 AC2 18 TRP B 803 HOH B1165 HOH B1168 HOH B1253 SITE 5 AC2 18 HOH B1585 LEU C2008 SITE 1 AC3 5 LEU B 589 THR B 590 TYR B 593 HOH B1183 SITE 2 AC3 5 HOH B1449 CRYST1 171.147 171.147 69.326 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005843 0.003373 0.000000 0.00000 SCALE2 0.000000 0.006747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014425 0.00000