HEADER TOXIN 06-OCT-95 1TOX TITLE DIPHTHERIA TOXIN DIMER COMPLEXED WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPHTHERIA TOXIN (DIMERIC); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DT; COMPND 5 EC: 2.4.2.36; COMPND 6 OTHER_DETAILS: PH=7.5, -180 DEG C DATA COLLECTION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEPHAGE BETA; SOURCE 3 ORGANISM_TAXID: 10703; SOURCE 4 OTHER_DETAILS: NAD FROM YEAST, CRYSTALLINE FORM, PURCHASED FROM SOURCE 5 SIGMA (N 1636) KEYWDS TOXIN, ADP-RIBOSYLATION, GLUCOSYLTRANSFERASE, TRANSFERASE, NAD EXPDTA X-RAY DIFFRACTION AUTHOR C.E.BELL,D.EISENBERG REVDAT 3 13-JUL-11 1TOX 1 VERSN REVDAT 2 24-FEB-09 1TOX 1 VERSN REVDAT 1 10-JUN-96 1TOX 0 JRNL AUTH C.E.BELL,D.EISENBERG JRNL TITL CRYSTAL STRUCTURE OF DIPHTHERIA TOXIN BOUND TO NICOTINAMIDE JRNL TITL 2 ADENINE DINUCLEOTIDE. JRNL REF BIOCHEMISTRY V. 35 1137 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8573568 JRNL DOI 10.1021/BI9520848 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.J.BENNETT,S.CHOE,D.EISENBERG REMARK 1 TITL DOMAIN SWAPPING: ENTANGLING ALLIANCES BETWEEN PROTEINS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 91 3127 1994 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.J.BENNETT,D.EISENBERG REMARK 1 TITL REFINED STRUCTURE OF MONOMERIC DIPHTHERIA TOXIN AT 2.3 A REMARK 1 TITL 2 RESOLUTION REMARK 1 REF PROTEIN SCI. V. 3 1464 1994 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.J.BENNETT,S.CHOE,D.EISENBERG REMARK 1 TITL REFINED STRUCTURE OF DIMERIC DIPHTHERIA TOXIN AT 2.0 A REMARK 1 TITL 2 RESOLUTION REMARK 1 REF PROTEIN SCI. V. 3 1444 1994 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 4 REMARK 1 AUTH S.CHOE,M.J.BENNETT,G.FUJII,P.M.CURMI,K.A.KANTARDJIEFF, REMARK 1 AUTH 2 R.J.COLLIER,D.EISENBERG REMARK 1 TITL THE CRYSTAL STRUCTURE OF DIPHTHERIA TOXIN REMARK 1 REF NATURE V. 357 216 1992 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 48300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7905 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.50 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TOX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-94 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS (MSC) REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48977 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 65.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA COLLECTION USING LIQUID NITROGEN COOLED NITROGEN VAPOR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.50000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.50000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 105.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 95.92468 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 129.78308 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 39 REMARK 465 SER A 40 REMARK 465 GLY A 41 REMARK 465 THR A 42 REMARK 465 GLN A 43 REMARK 465 GLY A 44 REMARK 465 ASN A 45 REMARK 465 TYR A 46 REMARK 465 GLY A 188 REMARK 465 ASN A 189 REMARK 465 ARG A 190 REMARK 465 VAL A 191 REMARK 465 ARG A 192 REMARK 465 ARG A 193 REMARK 465 SER A 194 REMARK 465 VAL A 195 REMARK 465 GLY A 196 REMARK 465 SER A 197 REMARK 465 SER A 198 REMARK 465 LEU A 199 REMARK 465 PRO B 38 REMARK 465 LYS B 39 REMARK 465 SER B 40 REMARK 465 GLY B 41 REMARK 465 THR B 42 REMARK 465 GLN B 43 REMARK 465 GLY B 44 REMARK 465 ASN B 45 REMARK 465 TYR B 46 REMARK 465 ASP B 47 REMARK 465 GLY B 188 REMARK 465 ASN B 189 REMARK 465 ARG B 190 REMARK 465 VAL B 191 REMARK 465 ARG B 192 REMARK 465 ARG B 193 REMARK 465 SER B 194 REMARK 465 VAL B 195 REMARK 465 GLY B 196 REMARK 465 SER B 197 REMARK 465 SER B 198 REMARK 465 LEU B 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 38 O REMARK 470 ALA A 187 O REMARK 470 LYS B 37 O REMARK 470 ALA B 187 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 68 112.68 -33.00 REMARK 500 GLU A 349 -3.20 -145.28 REMARK 500 LEU A 350 -158.87 -115.82 REMARK 500 ILE A 353 -84.22 -16.95 REMARK 500 TYR A 358 -96.21 -96.96 REMARK 500 LYS A 385 -136.60 46.37 REMARK 500 HIS A 391 135.22 -170.07 REMARK 500 ASN A 424 -97.56 -143.84 REMARK 500 SER A 501 70.57 -66.74 REMARK 500 ASN A 502 -27.03 169.58 REMARK 500 ASP A 519 30.85 39.98 REMARK 500 HIS A 520 9.43 51.64 REMARK 500 GLU B 349 88.43 -167.06 REMARK 500 LEU B 350 -123.43 -171.37 REMARK 500 ASP B 352 -67.08 -29.98 REMARK 500 ILE B 353 76.14 -68.30 REMARK 500 TYR B 358 -85.16 -118.44 REMARK 500 LYS B 385 -138.10 47.78 REMARK 500 ASN B 424 -95.06 -134.27 REMARK 500 ASP B 465 137.28 67.77 REMARK 500 GLU B 503 -44.24 -159.45 REMARK 500 HIS B 520 10.97 50.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 358 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 678 DISTANCE = 7.30 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAA REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: CAB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 536 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 536 DBREF 1TOX A 1 535 UNP P00588 DTX_CORBE 26 560 DBREF 1TOX B 1 535 UNP P00588 DTX_CORBE 26 560 SEQRES 1 A 535 GLY ALA ASP ASP VAL VAL ASP SER SER LYS SER PHE VAL SEQRES 2 A 535 MET GLU ASN PHE SER SER TYR HIS GLY THR LYS PRO GLY SEQRES 3 A 535 TYR VAL ASP SER ILE GLN LYS GLY ILE GLN LYS PRO LYS SEQRES 4 A 535 SER GLY THR GLN GLY ASN TYR ASP ASP ASP TRP LYS GLY SEQRES 5 A 535 PHE TYR SER THR ASP ASN LYS TYR ASP ALA ALA GLY TYR SEQRES 6 A 535 SER VAL ASP ASN GLU ASN PRO LEU SER GLY LYS ALA GLY SEQRES 7 A 535 GLY VAL VAL LYS VAL THR TYR PRO GLY LEU THR LYS VAL SEQRES 8 A 535 LEU ALA LEU LYS VAL ASP ASN ALA GLU THR ILE LYS LYS SEQRES 9 A 535 GLU LEU GLY LEU SER LEU THR GLU PRO LEU MET GLU GLN SEQRES 10 A 535 VAL GLY THR GLU GLU PHE ILE LYS ARG PHE GLY ASP GLY SEQRES 11 A 535 ALA SER ARG VAL VAL LEU SER LEU PRO PHE ALA GLU GLY SEQRES 12 A 535 SER SER SER VAL GLU TYR ILE ASN ASN TRP GLU GLN ALA SEQRES 13 A 535 LYS ALA LEU SER VAL GLU LEU GLU ILE ASN PHE GLU THR SEQRES 14 A 535 ARG GLY LYS ARG GLY GLN ASP ALA MET TYR GLU TYR MET SEQRES 15 A 535 ALA GLN ALA CYS ALA GLY ASN ARG VAL ARG ARG SER VAL SEQRES 16 A 535 GLY SER SER LEU SER CYS ILE ASN LEU ASP TRP ASP VAL SEQRES 17 A 535 ILE ARG ASP LYS THR LYS THR LYS ILE GLU SER LEU LYS SEQRES 18 A 535 GLU HIS GLY PRO ILE LYS ASN LYS MET SER GLU SER PRO SEQRES 19 A 535 ASN LYS THR VAL SER GLU GLU LYS ALA LYS GLN TYR LEU SEQRES 20 A 535 GLU GLU PHE HIS GLN THR ALA LEU GLU HIS PRO GLU LEU SEQRES 21 A 535 SER GLU LEU LYS THR VAL THR GLY THR ASN PRO VAL PHE SEQRES 22 A 535 ALA GLY ALA ASN TYR ALA ALA TRP ALA VAL ASN VAL ALA SEQRES 23 A 535 GLN VAL ILE ASP SER GLU THR ALA ASP ASN LEU GLU LYS SEQRES 24 A 535 THR THR ALA ALA LEU SER ILE LEU PRO GLY ILE GLY SER SEQRES 25 A 535 VAL MET GLY ILE ALA ASP GLY ALA VAL HIS HIS ASN THR SEQRES 26 A 535 GLU GLU ILE VAL ALA GLN SER ILE ALA LEU SER SER LEU SEQRES 27 A 535 MET VAL ALA GLN ALA ILE PRO LEU VAL GLY GLU LEU VAL SEQRES 28 A 535 ASP ILE GLY PHE ALA ALA TYR ASN PHE VAL GLU SER ILE SEQRES 29 A 535 ILE ASN LEU PHE GLN VAL VAL HIS ASN SER TYR ASN ARG SEQRES 30 A 535 PRO ALA TYR SER PRO GLY HIS LYS THR GLN PRO PHE LEU SEQRES 31 A 535 HIS ASP GLY TYR ALA VAL SER TRP ASN THR VAL GLU ASP SEQRES 32 A 535 SER ILE ILE ARG THR GLY PHE GLN GLY GLU SER GLY HIS SEQRES 33 A 535 ASP ILE LYS ILE THR ALA GLU ASN THR PRO LEU PRO ILE SEQRES 34 A 535 ALA GLY VAL LEU LEU PRO THR ILE PRO GLY LYS LEU ASP SEQRES 35 A 535 VAL ASN LYS SER LYS THR HIS ILE SER VAL ASN GLY ARG SEQRES 36 A 535 LYS ILE ARG MET ARG CYS ARG ALA ILE ASP GLY ASP VAL SEQRES 37 A 535 THR PHE CYS ARG PRO LYS SER PRO VAL TYR VAL GLY ASN SEQRES 38 A 535 GLY VAL HIS ALA ASN LEU HIS VAL ALA PHE HIS ARG SER SEQRES 39 A 535 SER SER GLU LYS ILE HIS SER ASN GLU ILE SER SER ASP SEQRES 40 A 535 SER ILE GLY VAL LEU GLY TYR GLN LYS THR VAL ASP HIS SEQRES 41 A 535 THR LYS VAL ASN SER LYS LEU SER LEU PHE PHE GLU ILE SEQRES 42 A 535 LYS SER SEQRES 1 B 535 GLY ALA ASP ASP VAL VAL ASP SER SER LYS SER PHE VAL SEQRES 2 B 535 MET GLU ASN PHE SER SER TYR HIS GLY THR LYS PRO GLY SEQRES 3 B 535 TYR VAL ASP SER ILE GLN LYS GLY ILE GLN LYS PRO LYS SEQRES 4 B 535 SER GLY THR GLN GLY ASN TYR ASP ASP ASP TRP LYS GLY SEQRES 5 B 535 PHE TYR SER THR ASP ASN LYS TYR ASP ALA ALA GLY TYR SEQRES 6 B 535 SER VAL ASP ASN GLU ASN PRO LEU SER GLY LYS ALA GLY SEQRES 7 B 535 GLY VAL VAL LYS VAL THR TYR PRO GLY LEU THR LYS VAL SEQRES 8 B 535 LEU ALA LEU LYS VAL ASP ASN ALA GLU THR ILE LYS LYS SEQRES 9 B 535 GLU LEU GLY LEU SER LEU THR GLU PRO LEU MET GLU GLN SEQRES 10 B 535 VAL GLY THR GLU GLU PHE ILE LYS ARG PHE GLY ASP GLY SEQRES 11 B 535 ALA SER ARG VAL VAL LEU SER LEU PRO PHE ALA GLU GLY SEQRES 12 B 535 SER SER SER VAL GLU TYR ILE ASN ASN TRP GLU GLN ALA SEQRES 13 B 535 LYS ALA LEU SER VAL GLU LEU GLU ILE ASN PHE GLU THR SEQRES 14 B 535 ARG GLY LYS ARG GLY GLN ASP ALA MET TYR GLU TYR MET SEQRES 15 B 535 ALA GLN ALA CYS ALA GLY ASN ARG VAL ARG ARG SER VAL SEQRES 16 B 535 GLY SER SER LEU SER CYS ILE ASN LEU ASP TRP ASP VAL SEQRES 17 B 535 ILE ARG ASP LYS THR LYS THR LYS ILE GLU SER LEU LYS SEQRES 18 B 535 GLU HIS GLY PRO ILE LYS ASN LYS MET SER GLU SER PRO SEQRES 19 B 535 ASN LYS THR VAL SER GLU GLU LYS ALA LYS GLN TYR LEU SEQRES 20 B 535 GLU GLU PHE HIS GLN THR ALA LEU GLU HIS PRO GLU LEU SEQRES 21 B 535 SER GLU LEU LYS THR VAL THR GLY THR ASN PRO VAL PHE SEQRES 22 B 535 ALA GLY ALA ASN TYR ALA ALA TRP ALA VAL ASN VAL ALA SEQRES 23 B 535 GLN VAL ILE ASP SER GLU THR ALA ASP ASN LEU GLU LYS SEQRES 24 B 535 THR THR ALA ALA LEU SER ILE LEU PRO GLY ILE GLY SER SEQRES 25 B 535 VAL MET GLY ILE ALA ASP GLY ALA VAL HIS HIS ASN THR SEQRES 26 B 535 GLU GLU ILE VAL ALA GLN SER ILE ALA LEU SER SER LEU SEQRES 27 B 535 MET VAL ALA GLN ALA ILE PRO LEU VAL GLY GLU LEU VAL SEQRES 28 B 535 ASP ILE GLY PHE ALA ALA TYR ASN PHE VAL GLU SER ILE SEQRES 29 B 535 ILE ASN LEU PHE GLN VAL VAL HIS ASN SER TYR ASN ARG SEQRES 30 B 535 PRO ALA TYR SER PRO GLY HIS LYS THR GLN PRO PHE LEU SEQRES 31 B 535 HIS ASP GLY TYR ALA VAL SER TRP ASN THR VAL GLU ASP SEQRES 32 B 535 SER ILE ILE ARG THR GLY PHE GLN GLY GLU SER GLY HIS SEQRES 33 B 535 ASP ILE LYS ILE THR ALA GLU ASN THR PRO LEU PRO ILE SEQRES 34 B 535 ALA GLY VAL LEU LEU PRO THR ILE PRO GLY LYS LEU ASP SEQRES 35 B 535 VAL ASN LYS SER LYS THR HIS ILE SER VAL ASN GLY ARG SEQRES 36 B 535 LYS ILE ARG MET ARG CYS ARG ALA ILE ASP GLY ASP VAL SEQRES 37 B 535 THR PHE CYS ARG PRO LYS SER PRO VAL TYR VAL GLY ASN SEQRES 38 B 535 GLY VAL HIS ALA ASN LEU HIS VAL ALA PHE HIS ARG SER SEQRES 39 B 535 SER SER GLU LYS ILE HIS SER ASN GLU ILE SER SER ASP SEQRES 40 B 535 SER ILE GLY VAL LEU GLY TYR GLN LYS THR VAL ASP HIS SEQRES 41 B 535 THR LYS VAL ASN SER LYS LEU SER LEU PHE PHE GLU ILE SEQRES 42 B 535 LYS SER HET NAD A 536 44 HET NAD B 536 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 HOH *302(H2 O) HELIX 1 1 ALA A 2 VAL A 5 1 4 HELIX 2 2 SER A 8 LYS A 10 5 3 HELIX 3 3 SER A 30 LYS A 33 5 4 HELIX 4 4 ASP A 48 TRP A 50 5 3 HELIX 5 5 LYS A 59 TYR A 65 1 7 HELIX 6 6 ALA A 99 GLU A 105 1 7 HELIX 7 7 LEU A 114 GLY A 119 1 6 HELIX 8 8 GLU A 121 GLY A 128 1 8 HELIX 9 9 GLN A 155 ALA A 158 5 4 HELIX 10 10 ASP A 176 CYS A 186 1 11 HELIX 11 11 TRP A 206 LYS A 221 1 16 HELIX 12 12 GLY A 224 SER A 231 1 8 HELIX 13 13 GLU A 240 GLU A 256 1 17 HELIX 14 14 PRO A 258 VAL A 266 5 9 HELIX 15 15 PRO A 271 PHE A 273 5 3 HELIX 16 16 GLY A 275 VAL A 288 1 14 HELIX 17 17 SER A 291 ALA A 294 1 4 HELIX 18 18 LEU A 297 ILE A 306 1 10 HELIX 19 19 ILE A 310 MET A 314 1 5 HELIX 20 20 GLU A 326 VAL A 347 1 22 HELIX 21 21 ASP A 352 ALA A 357 1 6 HELIX 22 22 ASN A 359 ASN A 376 1 18 HELIX 23 23 GLU A 402 SER A 404 5 3 HELIX 24 24 ALA B 2 ASP B 4 5 3 HELIX 25 25 SER B 8 LYS B 10 5 3 HELIX 26 26 SER B 30 LYS B 33 5 4 HELIX 27 27 LYS B 59 TYR B 65 1 7 HELIX 28 28 ALA B 99 GLU B 105 1 7 HELIX 29 29 LEU B 114 GLN B 117 1 4 HELIX 30 30 GLU B 121 GLY B 128 1 8 HELIX 31 31 GLN B 155 ALA B 158 5 4 HELIX 32 32 ASP B 176 CYS B 186 1 11 HELIX 33 33 TRP B 206 LYS B 221 1 16 HELIX 34 34 GLY B 224 SER B 231 1 8 HELIX 35 35 GLU B 240 GLU B 256 1 17 HELIX 36 36 PRO B 258 VAL B 266 5 9 HELIX 37 37 PRO B 271 PHE B 273 5 3 HELIX 38 38 GLY B 275 VAL B 288 1 14 HELIX 39 39 SER B 291 ASP B 295 1 5 HELIX 40 40 LEU B 297 ILE B 306 1 10 HELIX 41 41 ILE B 310 MET B 314 1 5 HELIX 42 42 GLU B 326 VAL B 347 1 22 HELIX 43 43 ASP B 352 PHE B 355 1 4 HELIX 44 44 ASN B 359 ASN B 376 1 18 HELIX 45 45 GLU B 402 SER B 404 5 3 SHEET 1 A 5 PHE A 12 GLU A 15 0 SHEET 2 A 5 LEU A 88 ALA A 93 -1 N VAL A 91 O PHE A 12 SHEET 3 A 5 ARG A 133 PRO A 139 1 N ARG A 133 O LYS A 90 SHEET 4 A 5 VAL A 147 ASN A 151 -1 N ILE A 150 O LEU A 136 SHEET 5 A 5 PHE A 53 THR A 56 -1 N SER A 55 O TYR A 149 SHEET 1 B 3 PHE A 17 THR A 23 0 SHEET 2 B 3 GLY A 79 TYR A 85 -1 N TYR A 85 O PHE A 17 SHEET 3 B 3 LEU A 159 ASN A 166 -1 N ILE A 165 O VAL A 80 SHEET 1 C 5 PHE A 389 HIS A 391 0 SHEET 2 C 5 TYR A 394 TRP A 398 -1 N VAL A 396 O PHE A 389 SHEET 3 C 5 GLY A 412 ALA A 422 -1 N THR A 421 O ALA A 395 SHEET 4 C 5 HIS A 484 ARG A 493 -1 N ARG A 493 O GLY A 412 SHEET 5 C 5 LEU A 441 VAL A 443 -1 N ASP A 442 O HIS A 492 SHEET 1 D 2 ILE A 405 ARG A 407 0 SHEET 2 D 2 GLU A 532 LYS A 534 1 N GLU A 532 O ILE A 406 SHEET 1 E 5 LYS A 526 PHE A 530 0 SHEET 2 E 5 SER A 508 LEU A 512 -1 N VAL A 511 O LEU A 527 SHEET 3 E 5 GLY A 431 PRO A 435 -1 N LEU A 433 O GLY A 510 SHEET 4 E 5 VAL A 468 PRO A 473 -1 N CYS A 471 O VAL A 432 SHEET 5 E 5 MET A 459 ILE A 464 -1 N ILE A 464 O VAL A 468 SHEET 1 F 3 ARG A 455 ARG A 458 0 SHEET 2 F 3 HIS A 449 VAL A 452 -1 N VAL A 452 O ARG A 455 SHEET 3 F 3 ALA A 485 HIS A 488 -1 N HIS A 488 O HIS A 449 SHEET 1 G 5 PHE B 12 GLU B 15 0 SHEET 2 G 5 LEU B 88 ALA B 93 -1 N VAL B 91 O PHE B 12 SHEET 3 G 5 ARG B 133 PRO B 139 1 N ARG B 133 O LYS B 90 SHEET 4 G 5 VAL B 147 ASN B 151 -1 N ILE B 150 O LEU B 136 SHEET 5 G 5 PHE B 53 THR B 56 -1 N SER B 55 O TYR B 149 SHEET 1 H 3 PHE B 17 THR B 23 0 SHEET 2 H 3 GLY B 79 TYR B 85 -1 N TYR B 85 O PHE B 17 SHEET 3 H 3 SER B 160 ASN B 166 -1 N ILE B 165 O VAL B 80 SHEET 1 I 6 PHE B 389 HIS B 391 0 SHEET 2 I 6 TYR B 394 TRP B 398 -1 N VAL B 396 O PHE B 389 SHEET 3 I 6 GLY B 412 ALA B 422 -1 N THR B 421 O ALA B 395 SHEET 4 I 6 HIS B 484 ARG B 493 -1 N ARG B 493 O GLY B 412 SHEET 5 I 6 HIS B 449 VAL B 452 -1 N SER B 451 O ASN B 486 SHEET 6 I 6 ARG B 455 ARG B 458 -1 N ILE B 457 O ILE B 450 SHEET 1 J 2 ILE B 405 ARG B 407 0 SHEET 2 J 2 GLU B 532 LYS B 534 1 N GLU B 532 O ILE B 406 SHEET 1 K 5 LYS B 526 PHE B 530 0 SHEET 2 K 5 SER B 508 LEU B 512 -1 N VAL B 511 O LEU B 527 SHEET 3 K 5 GLY B 431 PRO B 435 -1 N LEU B 433 O GLY B 510 SHEET 4 K 5 VAL B 468 PRO B 473 -1 N CYS B 471 O VAL B 432 SHEET 5 K 5 MET B 459 ALA B 463 -1 N ARG B 462 O PHE B 470 SSBOND 1 CYS A 186 CYS A 201 1555 1555 2.04 SSBOND 2 CYS A 461 CYS A 471 1555 1555 2.04 SSBOND 3 CYS B 186 CYS B 201 1555 1555 2.04 SSBOND 4 CYS B 461 CYS B 471 1555 1555 2.05 SITE 1 CAA 1 GLU A 148 SITE 1 CAB 1 GLU B 148 SITE 1 AC1 15 HIS A 21 GLY A 22 THR A 23 GLY A 34 SITE 2 AC1 15 ILE A 35 GLN A 36 TYR A 54 SER A 55 SITE 3 AC1 15 TYR A 65 GLU A 148 TRP A 153 ARG A 458 SITE 4 AC1 15 HOH A 649 HOH A 673 HOH A 683 SITE 1 AC2 11 HIS B 21 GLY B 22 THR B 23 TYR B 27 SITE 2 AC2 11 GLY B 34 ILE B 35 GLN B 36 TYR B 54 SITE 3 AC2 11 TYR B 65 GLU B 148 HOH B 612 CRYST1 105.000 89.500 130.100 90.00 94.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009524 0.000000 0.000666 0.00000 SCALE2 0.000000 0.011173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007705 0.00000 MTRIX1 1 0.999945 -0.006208 0.008430 3.92825 1 MTRIX2 1 0.006340 0.999857 -0.015694 -8.59869 1 MTRIX3 1 -0.008331 0.015747 0.999841 -64.28194 1