HEADER ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)03-FEB-94 1TPC TITLE OFFSET OF A CATALYTIC LESION BY A BOUND WATER SOLUBLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: 1, 2; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE) EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,S.SUGIO,E.A.KOMIVES,K.D.LIU,J.R.KNOWLES,G.A.PETSKO,D.RINGE REVDAT 4 14-FEB-24 1TPC 1 REMARK SEQADV REVDAT 3 13-JUL-11 1TPC 1 SHEET REVDAT 2 24-FEB-09 1TPC 1 VERSN REVDAT 1 14-FEB-95 1TPC 0 JRNL AUTH E.A.KOMIVES,J.C.LOUGHEED,K.LIU,S.SUGIO,Z.ZHANG,G.A.PETSKO, JRNL AUTH 2 D.RINGE JRNL TITL THE STRUCTURAL BASIS FOR PSEUDOREVERSION OF THE E165D LESION JRNL TITL 2 BY THE SECONDARY S96P MUTATION IN TRIOSEPHOSPHATE ISOMERASE JRNL TITL 3 DEPENDS ON THE POSITIONS OF ACTIVE SITE WATER MOLECULES. JRNL REF BIOCHEMISTRY V. 34 13612 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7577950 JRNL DOI 10.1021/BI00041A041 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.ZHANG,E.A.KOMIVES,S.SUGIO,K.D.LIU,J.R.KNOWLES,G.A.PETSKO, REMARK 1 AUTH 2 D.RINGE REMARK 1 TITL OFFSET OF A CATALYTIC LESION (GLU165ASP) OF TRIOSEPHOSPHATE REMARK 1 TITL 2 ISOMERASE BY BOUND WATERS SOLUBLE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH Z.ZHANG,S.SUGIO,A.M.STOCK,E.A.KOMIVES,K.D.LIU,N.NARAYANA, REMARK 1 AUTH 2 NG.H.HUONG,J.R.KNOWLES,G.A.PETSKO,D.RINGE REMARK 1 TITL TRIOSEPHOSPHATE ISOMERASE DRINKS WATER TO KEEP HEALTHY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH E.A.KOMIVES,J.C.LOUGHEED,Z.ZHANG,G.A.PETSKO,D.RINGE REMARK 1 TITL THE STRUCTURAL BASIS FOR PSEUDOREVERSION OF THE E165D LESION REMARK 1 TITL 2 BY THE SECONDARY S96P MUTATION IN TRIOSEPHOSPHATE ISOMERASE REMARK 1 TITL 3 DEPENDS ON THE POSITION OF BOUND WATER MOLECULES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 4 REMARK 1 AUTH Z.ZHANG,S.SUGIO,E.A.KOMIVES,K.D.LIU,A.M.STOCK,N.NARAYANA, REMARK 1 AUTH 2 NG.H.XUONG,J.R.KNOWLES,G.A.PETSKO,D.RINGE REMARK 1 TITL S96P CHANGE IS THE SECOND-SITE SUPPRESSOR FOR THE H95N REMARK 1 TITL 2 SLUGGISH MUTANT ISOMERASE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 5 REMARK 1 AUTH S.C.BLACKLOW,J.R.KNOWLES REMARK 1 TITL HOW CAN A CATALYTIC LESION BE OFFSET? THE ENERGETICS OF TWO REMARK 1 TITL 2 PSEUDOREVERTANT TRIOSEPHOSPHATE ISOMERASES REMARK 1 REF BIOCHEMISTRY V. 29 4099 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 38793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3712 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.015 ; 0.015 REMARK 3 ANGLE DISTANCE (A) : 0.030 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.042 ; 0.042 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 68.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 2 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA 1 2 REMARK 465 PRO 1 3 REMARK 465 ALA 2 2 REMARK 465 PRO 2 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 PGH 1 250 O HOH 1 326 2.12 REMARK 500 O ASP 2 156 O HOH 2 453 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS 2 19 O THR 2 194 1554 1.56 REMARK 500 OD2 ASP 2 132 NZ LYS 2 155 3546 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU 1 23 CD GLU 1 23 OE1 0.071 REMARK 500 GLU 1 38 CD GLU 1 38 OE2 0.076 REMARK 500 GLU 1 107 CD GLU 1 107 OE2 0.080 REMARK 500 GLU 1 135 CD GLU 1 135 OE2 0.071 REMARK 500 GLU 1 145 CD GLU 1 145 OE2 0.093 REMARK 500 GLU 1 219 CD GLU 1 219 OE1 0.080 REMARK 500 GLU 2 23 CD GLU 2 23 OE1 0.072 REMARK 500 GLU 2 107 CD GLU 2 107 OE2 0.071 REMARK 500 GLU 2 119 CD GLU 2 119 OE1 0.066 REMARK 500 GLU 2 129 CD GLU 2 129 OE1 0.073 REMARK 500 GLU 2 145 CD GLU 2 145 OE2 0.069 REMARK 500 GLU 2 186 CD GLU 2 186 OE1 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA 1 43 N - CA - CB ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG 1 52 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP 1 56 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 LYS 1 84 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG 1 98 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP 1 106 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ALA 1 125 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG 1 134 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP 1 165 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 HIS 1 185 CB - CG - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG 1 189 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG 1 189 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASN 1 216 C - N - CA ANGL. DEV. = 16.2 DEGREES REMARK 500 ASN 1 216 CB - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 ASN 1 216 CB - CG - ND2 ANGL. DEV. = 14.7 DEGREES REMARK 500 ASP 1 242 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG 2 4 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG 2 4 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG 2 52 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP 2 85 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG 2 98 CD - NE - CZ ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG 2 99 NH1 - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG 2 99 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 GLU 2 135 OE1 - CD - OE2 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP 2 165 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 ASP 2 165 CB - CG - OD1 ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP 2 165 CB - CG - OD2 ANGL. DEV. = 19.4 DEGREES REMARK 500 ARG 2 189 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASN 2 216 C - N - CA ANGL. DEV. = 24.6 DEGREES REMARK 500 ASN 2 216 CB - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 ASN 2 216 OD1 - CG - ND2 ANGL. DEV. = -15.3 DEGREES REMARK 500 ASN 2 216 CB - CG - OD1 ANGL. DEV. = 13.4 DEGREES REMARK 500 CYS 2 217 CA - CB - SG ANGL. DEV. = 9.3 DEGREES REMARK 500 ASP 2 227 CB - CG - OD1 ANGL. DEV. = -8.3 DEGREES REMARK 500 ASP 2 227 CB - CG - OD2 ANGL. DEV. = 11.1 DEGREES REMARK 500 GLY 2 232 CA - C - O ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS 1 13 -143.58 53.67 REMARK 500 ASN 1 65 163.98 178.76 REMARK 500 VAL 1 196 -81.28 -120.48 REMARK 500 LYS 2 13 -144.60 53.87 REMARK 500 VAL 2 196 -76.74 -120.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG 1 98 0.09 SIDE CHAIN REMARK 500 ARG 2 134 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGH 1 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGH 2 250 DBREF 1TPC 1 2 248 UNP P00940 TPIS_CHICK 1 247 DBREF 1TPC 2 2 248 UNP P00940 TPIS_CHICK 1 247 SEQADV 1TPC PRO 1 96 UNP P00940 SER 95 CONFLICT SEQADV 1TPC ASP 1 165 UNP P00940 GLU 164 CONFLICT SEQADV 1TPC THR 1 194 UNP P00940 SER 193 CONFLICT SEQADV 1TPC PRO 2 96 UNP P00940 SER 95 CONFLICT SEQADV 1TPC ASP 2 165 UNP P00940 GLU 164 CONFLICT SEQADV 1TPC THR 2 194 UNP P00940 SER 193 CONFLICT SEQRES 1 1 247 ALA PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS MET SEQRES 2 1 247 ASN GLY ASP LYS LYS SER LEU GLY GLU LEU ILE HIS THR SEQRES 3 1 247 LEU ASN GLY ALA LYS LEU SER ALA ASP THR GLU VAL VAL SEQRES 4 1 247 CYS GLY ALA PRO SER ILE TYR LEU ASP PHE ALA ARG GLN SEQRES 5 1 247 LYS LEU ASP ALA LYS ILE GLY VAL ALA ALA GLN ASN CYS SEQRES 6 1 247 TYR LYS VAL PRO LYS GLY ALA PHE THR GLY GLU ILE SER SEQRES 7 1 247 PRO ALA MET ILE LYS ASP ILE GLY ALA ALA TRP VAL ILE SEQRES 8 1 247 LEU GLY HIS PRO GLU ARG ARG HIS VAL PHE GLY GLU SER SEQRES 9 1 247 ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU ALA SEQRES 10 1 247 GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS LEU SEQRES 11 1 247 ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL PHE SEQRES 12 1 247 GLU GLN THR LYS ALA ILE ALA ASP ASN VAL LYS ASP TRP SEQRES 13 1 247 SER LYS VAL VAL LEU ALA TYR ASP PRO VAL TRP ALA ILE SEQRES 14 1 247 GLY THR GLY LYS THR ALA THR PRO GLN GLN ALA GLN GLU SEQRES 15 1 247 VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS THR HIS VAL SEQRES 16 1 247 SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR GLY SEQRES 17 1 247 GLY SER VAL THR GLY GLY ASN CYS LYS GLU LEU ALA SER SEQRES 18 1 247 GLN HIS ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 1 247 LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS HIS SEQRES 1 2 247 ALA PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS MET SEQRES 2 2 247 ASN GLY ASP LYS LYS SER LEU GLY GLU LEU ILE HIS THR SEQRES 3 2 247 LEU ASN GLY ALA LYS LEU SER ALA ASP THR GLU VAL VAL SEQRES 4 2 247 CYS GLY ALA PRO SER ILE TYR LEU ASP PHE ALA ARG GLN SEQRES 5 2 247 LYS LEU ASP ALA LYS ILE GLY VAL ALA ALA GLN ASN CYS SEQRES 6 2 247 TYR LYS VAL PRO LYS GLY ALA PHE THR GLY GLU ILE SER SEQRES 7 2 247 PRO ALA MET ILE LYS ASP ILE GLY ALA ALA TRP VAL ILE SEQRES 8 2 247 LEU GLY HIS PRO GLU ARG ARG HIS VAL PHE GLY GLU SER SEQRES 9 2 247 ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU ALA SEQRES 10 2 247 GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS LEU SEQRES 11 2 247 ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL PHE SEQRES 12 2 247 GLU GLN THR LYS ALA ILE ALA ASP ASN VAL LYS ASP TRP SEQRES 13 2 247 SER LYS VAL VAL LEU ALA TYR ASP PRO VAL TRP ALA ILE SEQRES 14 2 247 GLY THR GLY LYS THR ALA THR PRO GLN GLN ALA GLN GLU SEQRES 15 2 247 VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS THR HIS VAL SEQRES 16 2 247 SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR GLY SEQRES 17 2 247 GLY SER VAL THR GLY GLY ASN CYS LYS GLU LEU ALA SER SEQRES 18 2 247 GLN HIS ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 2 247 LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS HIS HET PGH 1 250 10 HET PGH 2 250 10 HETNAM PGH PHOSPHOGLYCOLOHYDROXAMIC ACID FORMUL 3 PGH 2(C2 H6 N O6 P) FORMUL 5 HOH *234(H2 O) HELIX 1 A1 LYS 1 18 GLY 1 30 1 13 HELIX 2 A2 LEU 1 48 LYS 1 54 1 7 HELIX 3 A3 PRO 1 80 ILE 1 86 1 7 HELIX 4 A4 PRO 1 96 HIS 1 100 1 5 HELIX 5 A5 ASP 1 106 ALA 1 118 1 13 HELIX 6 A6 LEU 1 131 GLU 1 135 1 5 HELIX 7 A7 THR 1 139 ALA 1 151 1 13 HELIX 8 A8 THR 1 175 LEU 1 192 1 18 HELIX 9 A9 ASP 1 198 SER 1 203 1 6 HELIX 10 A10 CYS 1 217 ALA 1 221 1 5 HELIX 11 A11 PHE 1 240 ILE 1 244 1 5 HELIX 12 B1 LYS 2 18 GLY 2 30 1 13 HELIX 13 B2 LEU 2 48 LYS 2 54 1 7 HELIX 14 B3 PRO 2 80 ILE 2 86 1 7 HELIX 15 B4 PRO 2 96 HIS 2 100 1 5 HELIX 16 B5 ASP 2 106 ALA 2 118 1 13 HELIX 17 B6 LEU 2 131 GLU 2 135 1 5 HELIX 18 B7 THR 2 139 ALA 2 151 1 13 HELIX 19 B8 THR 2 175 LEU 2 192 1 18 HELIX 20 B9 ASP 2 198 SER 2 203 1 6 HELIX 21 B10 CYS 2 217 ALA 2 221 1 5 HELIX 22 B11 PHE 2 240 ILE 2 244 1 5 SHEET 1 S1 9 PHE 1 6 ASN 1 11 0 SHEET 2 S1 9 THR 1 37 GLY 1 42 1 SHEET 3 S1 9 GLY 1 60 ALA 1 63 1 SHEET 4 S1 9 TRP 1 90 LEU 1 93 1 SHEET 5 S1 9 GLY 1 122 ILE 1 127 1 SHEET 6 S1 9 VAL 1 160 TYR 1 164 1 SHEET 7 S1 9 ILE 1 206 GLY 1 209 1 SHEET 8 S1 9 VAL 1 226 VAL 1 231 1 SHEET 9 S1 9 PHE 1 6 ASN 1 11 1 SHEET 1 S2 9 PHE 2 6 ASN 2 11 0 SHEET 2 S2 9 THR 2 37 GLY 2 42 1 SHEET 3 S2 9 GLY 2 60 ALA 2 63 1 SHEET 4 S2 9 TRP 2 90 LEU 2 93 1 SHEET 5 S2 9 GLY 2 122 ILE 2 127 1 SHEET 6 S2 9 VAL 2 160 TYR 2 164 1 SHEET 7 S2 9 ILE 2 206 GLY 2 209 1 SHEET 8 S2 9 VAL 2 226 VAL 2 231 1 SHEET 9 S2 9 PHE 2 6 ASN 2 11 1 SITE 1 AC1 4 ASP 1 165 HIS 1 95 PRO 1 96 LYS 1 13 SITE 1 AC2 4 ASP 2 165 HIS 2 95 PRO 2 96 LYS 2 13 SITE 1 AC3 16 LYS 1 13 HIS 1 95 ASP 1 165 ALA 1 169 SITE 2 AC3 16 ILE 1 170 GLY 1 171 GLY 1 210 SER 1 211 SITE 3 AC3 16 LEU 1 230 GLY 1 232 GLY 1 233 HOH 1 326 SITE 4 AC3 16 HOH 1 337 HOH 1 344 HOH 1 359 HOH 1 360 SITE 1 AC4 16 LYS 2 13 HIS 2 95 ASP 2 165 ALA 2 169 SITE 2 AC4 16 ILE 2 170 GLY 2 171 GLY 2 210 SER 2 211 SITE 3 AC4 16 LEU 2 230 GLY 2 232 GLY 2 233 HOH 2 387 SITE 4 AC4 16 HOH 2 388 HOH 2 438 HOH 2 443 HOH 2 481 CRYST1 136.400 73.900 55.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007331 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017889 0.00000