HEADER ENDOCYTOSIS/EXOCYTOSIS 18-JUN-04 1TQZ TITLE SOLUTION STRUCTURE OF NECAP1 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NECAP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-133; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1 KEYWDS NECAP1 PROTEIN, ENDOCYTOSIS, STRUCTURAL GENOMICS, ENDOCYTOSIS- KEYWDS 2 EXOCYTOSIS COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.Y.DENISOV,B.RITTER,P.S.MCPHERSON,K.GEHRING REVDAT 3 02-MAR-22 1TQZ 1 REMARK REVDAT 2 24-FEB-09 1TQZ 1 VERSN REVDAT 1 26-JUL-05 1TQZ 0 JRNL AUTH A.Y.DENISOV,B.RITTER,P.S.MCPHERSON,K.GEHRING JRNL TITL SOLUTION STRUCTURE OF NECAP1 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE WAS REFINED BY USING STANDARD REMARK 3 PROTOCOL IN CNS WITH RESTRAINTS FROM NOE DISTANCES, BACKBONE REMARK 3 TORSION ANGLES, HYDROGEN BONDS AND RESIDUAL DIPOLAR COUPLINGS REMARK 4 REMARK 4 1TQZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022856. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 75MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM NECAP1 PROTEIN U-15N,13C, REMARK 210 25 MM PHOSPHATE BUFFER, 90% H2O, REMARK 210 10% D2O; 1.5 MM NECAP1 PROTEIN U- REMARK 210 15N, 25 MM PHOSPHATE BUFFER, 90% REMARK 210 H2O, 10% D2O; 0.6 MM NECAP1 REMARK 210 PROTEIN U-15N, 8 MG/ML PF1- REMARK 210 BACTERIOPHAGES, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCACB; CBCA(CO)HN; 13C,15N REMARK 210 -EDITED NOESY; HNHA; IPAP-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.0, XEASY 1.3.13 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB1 ALA A 81 HB2 ARG A 95 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -36.42 -176.05 REMARK 500 1 GLU A 4 -36.96 -150.13 REMARK 500 1 LYS A 14 104.75 -172.53 REMARK 500 1 PRO A 24 78.76 -66.91 REMARK 500 1 ALA A 26 117.35 -170.64 REMARK 500 1 ASN A 28 -160.63 -166.47 REMARK 500 1 ARG A 32 64.00 -161.48 REMARK 500 1 LYS A 37 156.79 59.86 REMARK 500 1 LEU A 38 118.03 -179.29 REMARK 500 1 GLN A 40 -69.16 -91.08 REMARK 500 1 PRO A 41 98.79 -69.04 REMARK 500 1 ASP A 42 73.69 -166.07 REMARK 500 1 GLU A 61 -96.79 178.86 REMARK 500 1 SER A 65 -41.75 -172.25 REMARK 500 1 GLU A 67 -77.52 -175.63 REMARK 500 1 PHE A 69 133.67 81.67 REMARK 500 1 TYR A 77 -59.70 -157.26 REMARK 500 1 ILE A 80 -175.54 -172.78 REMARK 500 1 ALA A 81 71.43 73.03 REMARK 500 1 THR A 84 -158.66 -128.44 REMARK 500 1 SER A 88 115.00 70.63 REMARK 500 1 SER A 89 -83.67 -135.48 REMARK 500 1 ARG A 90 38.72 175.14 REMARK 500 1 THR A 100 46.60 82.71 REMARK 500 1 PHE A 127 -82.76 -68.36 REMARK 500 1 VAL A 130 -62.65 -148.58 REMARK 500 2 ALA A 3 -64.75 -159.45 REMARK 500 2 LYS A 14 97.21 -174.15 REMARK 500 2 ARG A 25 -69.19 -172.06 REMARK 500 2 ARG A 32 74.45 -169.60 REMARK 500 2 LYS A 37 -106.81 68.53 REMARK 500 2 LEU A 38 43.02 138.91 REMARK 500 2 ASP A 39 38.75 -85.46 REMARK 500 2 ASP A 42 62.11 76.07 REMARK 500 2 SER A 65 84.89 93.88 REMARK 500 2 GLU A 67 -139.67 176.62 REMARK 500 2 PHE A 69 121.88 67.27 REMARK 500 2 GLN A 76 89.07 51.24 REMARK 500 2 TYR A 77 -61.64 -163.93 REMARK 500 2 ILE A 80 -176.18 -170.90 REMARK 500 2 ALA A 81 68.52 80.67 REMARK 500 2 THR A 84 -169.17 -121.13 REMARK 500 2 SER A 88 125.40 64.62 REMARK 500 2 SER A 89 61.15 -179.28 REMARK 500 2 ARG A 90 43.84 30.36 REMARK 500 2 THR A 100 20.54 90.68 REMARK 500 2 PHE A 127 -70.01 -45.65 REMARK 500 2 VAL A 130 -46.98 -142.46 REMARK 500 3 ALA A 2 30.25 -178.24 REMARK 500 3 LEU A 11 85.11 80.53 REMARK 500 REMARK 500 THIS ENTRY HAS 259 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1TQZ A 1 133 UNP Q9CR95 NECP1_MOUSE 1 133 SEQRES 1 A 133 MET ALA ALA GLU LEU GLU TYR GLU SER VAL LEU CYS VAL SEQRES 2 A 133 LYS PRO ASP VAL SER VAL TYR ARG ILE PRO PRO ARG ALA SEQRES 3 A 133 SER ASN ARG GLY TYR ARG ALA SER ASP TRP LYS LEU ASP SEQRES 4 A 133 GLN PRO ASP TRP THR GLY ARG LEU ARG ILE THR SER LYS SEQRES 5 A 133 GLY LYS ILE ALA TYR ILE LYS LEU GLU ASP LYS VAL SER SEQRES 6 A 133 GLY GLU LEU PHE ALA GLN ALA PRO VAL GLU GLN TYR PRO SEQRES 7 A 133 GLY ILE ALA VAL GLU THR VAL THR ASP SER SER ARG TYR SEQRES 8 A 133 PHE VAL ILE ARG ILE GLN ASP GLY THR GLY ARG SER ALA SEQRES 9 A 133 PHE ILE GLY ILE GLY PHE THR ASP ARG GLY ASP ALA PHE SEQRES 10 A 133 ASP PHE ASN VAL SER LEU GLN ASP HIS PHE LYS TRP VAL SEQRES 11 A 133 LYS GLN GLU HELIX 1 1 ARG A 32 LYS A 37 1 6 HELIX 2 2 ASP A 112 LYS A 128 1 17 SHEET 1 A 7 ALA A 70 VAL A 74 0 SHEET 2 A 7 ALA A 56 GLU A 61 -1 N ALA A 56 O VAL A 74 SHEET 3 A 7 TRP A 43 THR A 50 -1 N THR A 50 O TYR A 57 SHEET 4 A 7 VAL A 17 ARG A 21 -1 N VAL A 19 O TRP A 43 SHEET 5 A 7 ARG A 102 GLY A 109 -1 O GLY A 107 N TYR A 20 SHEET 6 A 7 PHE A 92 ASP A 98 -1 N PHE A 92 O ILE A 108 SHEET 7 A 7 VAL A 82 THR A 84 -1 N GLU A 83 O VAL A 93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1