data_1TRJ # _entry.id 1TRJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1TRJ pdb_00001trj 10.2210/pdb1trj/pdb RCSB RCSB022866 ? ? WWPDB D_1000022866 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_image_scans 2 4 'Structure model' em_software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_software.image_processing_id' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1TRJ _pdbx_database_status.recvd_initial_deposition_date 2004-06-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1GOT 'Heterotrimeric Complex Of A Gt-alpha/Gi-alpha Chimera and The Gt-beta-gamma Subunits' unspecified PDB 1S1H ;Structure Of The Ribosomal 80S-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For RNA and Protein Components Into A 11.7 A Cryo-Em Map. This File, 1S1H, Contains 40S Subunit. ; unspecified EMDB EMD-1067 . 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sengupta, J.' 1 'Nilsson, J.' 2 'Gursky, R.' 3 'Spahn, C.M.' 4 'Nissen, P.' 5 'Frank, J.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM' Nat.Struct.Mol.Biol. 11 957 962 2004 ? US 1545-9993 ? ? 15334071 10.1038/nsmb822 1 'Release of eIF6 (p27BBP) from the 60S subunit allows 80S ribosome assembly' Nature 426 579 584 2003 NATUAS UK 0028-0836 0006 ? ? ? 2 'Cpc2/RACK1 is a ribosome-associated protein that promotes efficient translation in Schizosaccharomyces pombe' J.Biol.Chem. 278 49119 49128 2003 JBCHA3 US 0021-9258 0071 ? ? ? 3 ;Asc1p, a WD40-domain containing adaptor protein, is required for the interaction of the RNA-binding protein Scp160p with polysomes ; Biochem.J. 380 823 830 2004 BIJOAK UK 0264-6021 0043 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sengupta, J.' 1 ? primary 'Nilsson, J.' 2 ? primary 'Gursky, R.' 3 ? primary 'Spahn, C.M.' 4 ? primary 'Nissen, P.' 5 ? primary 'Frank, J.' 6 ? 1 'Ceci, M.' 7 ? 1 'Gaviraghi, C.' 8 ? 1 'Gorrini, C.' 9 ? 1 'Sala, L.A.' 10 ? 1 'Offenhauser, N.' 11 ? 1 'Marchisio, P.C.' 12 ? 1 'Biffo, S.' 13 ? 2 'Shor, B.' 14 ? 2 'Calaycay, J.' 15 ? 2 'Rushbrook, J.' 16 ? 2 'McLeod, M.' 17 ? 3 'Baum, S.' 18 ? 3 'Bittins, M.' 19 ? 3 'Frey, S.' 20 ? 3 'Seedorf, M.' 21 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Helix 39 of 18S rRNA' 13155.822 1 ? ? ? ? 2 polymer syn 'Helix 40 of 18S rRNA' 8868.415 1 ? ? ? ? 3 polymer nat 'Guanine nucleotide-binding protein beta subunit-like protein' 34324.609 1 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'RACK1 protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGG CCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGG B ? 2 polyribonucleotide no no GACUGCCCGCGAAAGCGGGAGGAAGGA GACUGCCCGCGAAAGCGGGAGGAAGGA C ? 3 'polypeptide(L)' no no ;MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ ; ;MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 G n 1 4 C n 1 5 C n 1 6 G n 1 7 U n 1 8 U n 1 9 A n 1 10 G n 1 11 U n 1 12 U n 1 13 G n 1 14 C n 1 15 C n 1 16 A n 1 17 G n 1 18 C n 1 19 G n 1 20 G n 1 21 U n 1 22 U n 1 23 C n 1 24 G n 1 25 G n 1 26 C n 1 27 C n 1 28 G n 1 29 G n 1 30 G n 1 31 C n 1 32 A n 1 33 C n 1 34 U n 1 35 C n 1 36 U n 1 37 A n 1 38 A n 1 39 C n 1 40 G n 1 41 G n 2 1 G n 2 2 A n 2 3 C n 2 4 U n 2 5 G n 2 6 C n 2 7 C n 2 8 C n 2 9 G n 2 10 C n 2 11 G n 2 12 A n 2 13 A n 2 14 A n 2 15 G n 2 16 C n 2 17 G n 2 18 G n 2 19 G n 2 20 A n 2 21 G n 2 22 G n 2 23 A n 2 24 A n 2 25 G n 2 26 G n 2 27 A n 3 1 MET n 3 2 ALA n 3 3 SER n 3 4 ASN n 3 5 GLU n 3 6 VAL n 3 7 LEU n 3 8 VAL n 3 9 LEU n 3 10 ARG n 3 11 GLY n 3 12 THR n 3 13 LEU n 3 14 GLU n 3 15 GLY n 3 16 HIS n 3 17 ASN n 3 18 GLY n 3 19 TRP n 3 20 VAL n 3 21 THR n 3 22 SER n 3 23 LEU n 3 24 ALA n 3 25 THR n 3 26 SER n 3 27 ALA n 3 28 GLY n 3 29 GLN n 3 30 PRO n 3 31 ASN n 3 32 LEU n 3 33 LEU n 3 34 LEU n 3 35 SER n 3 36 ALA n 3 37 SER n 3 38 ARG n 3 39 ASP n 3 40 LYS n 3 41 THR n 3 42 LEU n 3 43 ILE n 3 44 SER n 3 45 TRP n 3 46 LYS n 3 47 LEU n 3 48 THR n 3 49 GLY n 3 50 ASP n 3 51 ASP n 3 52 GLN n 3 53 LYS n 3 54 PHE n 3 55 GLY n 3 56 VAL n 3 57 PRO n 3 58 VAL n 3 59 ARG n 3 60 SER n 3 61 PHE n 3 62 LYS n 3 63 GLY n 3 64 HIS n 3 65 SER n 3 66 HIS n 3 67 ILE n 3 68 VAL n 3 69 GLN n 3 70 ASP n 3 71 CYS n 3 72 THR n 3 73 LEU n 3 74 THR n 3 75 ALA n 3 76 ASP n 3 77 GLY n 3 78 ALA n 3 79 TYR n 3 80 ALA n 3 81 LEU n 3 82 SER n 3 83 ALA n 3 84 SER n 3 85 TRP n 3 86 ASP n 3 87 LYS n 3 88 THR n 3 89 LEU n 3 90 ARG n 3 91 LEU n 3 92 TRP n 3 93 ASP n 3 94 VAL n 3 95 ALA n 3 96 THR n 3 97 GLY n 3 98 GLU n 3 99 THR n 3 100 TYR n 3 101 GLN n 3 102 ARG n 3 103 PHE n 3 104 VAL n 3 105 GLY n 3 106 HIS n 3 107 LYS n 3 108 SER n 3 109 ASP n 3 110 VAL n 3 111 MET n 3 112 SER n 3 113 VAL n 3 114 ASP n 3 115 ILE n 3 116 ASP n 3 117 LYS n 3 118 LYS n 3 119 ALA n 3 120 SER n 3 121 MET n 3 122 ILE n 3 123 ILE n 3 124 SER n 3 125 GLY n 3 126 SER n 3 127 ARG n 3 128 ASP n 3 129 LYS n 3 130 THR n 3 131 ILE n 3 132 LYS n 3 133 VAL n 3 134 TRP n 3 135 THR n 3 136 ILE n 3 137 LYS n 3 138 GLY n 3 139 GLN n 3 140 CYS n 3 141 LEU n 3 142 ALA n 3 143 THR n 3 144 LEU n 3 145 LEU n 3 146 GLY n 3 147 HIS n 3 148 ASN n 3 149 ASP n 3 150 TRP n 3 151 VAL n 3 152 SER n 3 153 GLN n 3 154 VAL n 3 155 ARG n 3 156 VAL n 3 157 VAL n 3 158 PRO n 3 159 ASN n 3 160 GLU n 3 161 LYS n 3 162 ALA n 3 163 ASP n 3 164 ASP n 3 165 ASP n 3 166 SER n 3 167 VAL n 3 168 THR n 3 169 ILE n 3 170 ILE n 3 171 SER n 3 172 ALA n 3 173 GLY n 3 174 ASN n 3 175 ASP n 3 176 LYS n 3 177 MET n 3 178 VAL n 3 179 LYS n 3 180 ALA n 3 181 TRP n 3 182 ASN n 3 183 LEU n 3 184 ASN n 3 185 GLN n 3 186 PHE n 3 187 GLN n 3 188 ILE n 3 189 GLU n 3 190 ALA n 3 191 ASP n 3 192 PHE n 3 193 ILE n 3 194 GLY n 3 195 HIS n 3 196 ASN n 3 197 SER n 3 198 ASN n 3 199 ILE n 3 200 ASN n 3 201 THR n 3 202 LEU n 3 203 THR n 3 204 ALA n 3 205 SER n 3 206 PRO n 3 207 ASP n 3 208 GLY n 3 209 THR n 3 210 LEU n 3 211 ILE n 3 212 ALA n 3 213 SER n 3 214 ALA n 3 215 GLY n 3 216 LYS n 3 217 ASP n 3 218 GLY n 3 219 GLU n 3 220 ILE n 3 221 MET n 3 222 LEU n 3 223 TRP n 3 224 ASN n 3 225 LEU n 3 226 ALA n 3 227 ALA n 3 228 LYS n 3 229 LYS n 3 230 ALA n 3 231 MET n 3 232 TYR n 3 233 THR n 3 234 LEU n 3 235 SER n 3 236 ALA n 3 237 GLN n 3 238 ASP n 3 239 GLU n 3 240 VAL n 3 241 PHE n 3 242 SER n 3 243 LEU n 3 244 ALA n 3 245 PHE n 3 246 SER n 3 247 PRO n 3 248 ASN n 3 249 ARG n 3 250 TYR n 3 251 TRP n 3 252 LEU n 3 253 ALA n 3 254 ALA n 3 255 ALA n 3 256 THR n 3 257 ALA n 3 258 THR n 3 259 GLY n 3 260 ILE n 3 261 LYS n 3 262 VAL n 3 263 PHE n 3 264 SER n 3 265 LEU n 3 266 ASP n 3 267 PRO n 3 268 GLN n 3 269 TYR n 3 270 LEU n 3 271 VAL n 3 272 ASP n 3 273 ASP n 3 274 LEU n 3 275 ARG n 3 276 PRO n 3 277 GLU n 3 278 PHE n 3 279 ALA n 3 280 GLY n 3 281 TYR n 3 282 SER n 3 283 LYS n 3 284 ALA n 3 285 ALA n 3 286 GLU n 3 287 PRO n 3 288 HIS n 3 289 ALA n 3 290 VAL n 3 291 SER n 3 292 LEU n 3 293 ALA n 3 294 TRP n 3 295 SER n 3 296 ALA n 3 297 ASP n 3 298 GLY n 3 299 GLN n 3 300 THR n 3 301 LEU n 3 302 PHE n 3 303 ALA n 3 304 GLY n 3 305 TYR n 3 306 THR n 3 307 ASP n 3 308 ASN n 3 309 VAL n 3 310 ILE n 3 311 ARG n 3 312 VAL n 3 313 TRP n 3 314 GLN n # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ;baker's yeast ; _entity_src_nat.pdbx_organism_scientific 'Saccharomyces cerevisiae' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus Saccharomyces _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1115 1115 C C B . n A 1 2 C 2 1116 1116 C C B . n A 1 3 G 3 1117 1117 G G B . n A 1 4 C 4 1118 1118 C C B . n A 1 5 C 5 1119 1119 C C B . n A 1 6 G 6 1120 1120 G G B . n A 1 7 U 7 1121 1121 U U B . n A 1 8 U 8 1122 1122 U U B . n A 1 9 A 9 1123 1123 A A B . n A 1 10 G 10 1124 1124 G G B . n A 1 11 U 11 1125 1125 U U B . n A 1 12 U 12 1126 1126 U U B . n A 1 13 G 13 1127 1127 G G B . n A 1 14 C 14 1128 1128 C C B . n A 1 15 C 15 1129 1129 C C B . n A 1 16 A 16 1130 1130 A A B . n A 1 17 G 17 1131 1131 G G B . n A 1 18 C 18 1132 1132 C C B . n A 1 19 G 19 1133 1133 G G B . n A 1 20 G 20 1134 1134 G G B . n A 1 21 U 21 1135 1135 U U B . n A 1 22 U 22 1136 1136 U U B . n A 1 23 C 23 1137 1137 C C B . n A 1 24 G 24 1138 1138 G G B . n A 1 25 G 25 1139 1139 G G B . n A 1 26 C 26 1140 1140 C C B . n A 1 27 C 27 1141 1141 C C B . n A 1 28 G 28 1142 1142 G G B . n A 1 29 G 29 1143 1143 G G B . n A 1 30 G 30 1144 1144 G G B . n A 1 31 C 31 1145 1145 C C B . n A 1 32 A 32 1146 1146 A A B . n A 1 33 C 33 1147 1147 C C B . n A 1 34 U 34 1148 1148 U U B . n A 1 35 C 35 1149 1149 C C B . n A 1 36 U 36 1150 1150 U U B . n A 1 37 A 37 1151 1151 A A B . n A 1 38 A 38 1152 1152 A A B . n A 1 39 C 39 1153 1153 C C B . n A 1 40 G 40 1154 1154 G G B . n A 1 41 G 41 1155 1155 G G B . n B 2 1 G 1 1156 1156 G G C . n B 2 2 A 2 1157 1157 A A C . n B 2 3 C 3 1158 1158 C C C . n B 2 4 U 4 1159 1159 U U C . n B 2 5 G 5 1160 1160 G G C . n B 2 6 C 6 1161 1161 C C C . n B 2 7 C 7 1162 1162 C C C . n B 2 8 C 8 1163 1163 C C C . n B 2 9 G 9 1164 1164 G G C . n B 2 10 C 10 1165 1165 C C C . n B 2 11 G 11 1166 1166 G G C . n B 2 12 A 12 1167 1167 A A C . n B 2 13 A 13 1168 1168 A A C . n B 2 14 A 14 1169 1169 A A C . n B 2 15 G 15 1171 1171 G G C . n B 2 16 C 16 1172 1172 C C C . n B 2 17 G 17 1173 1173 G G C . n B 2 18 G 18 1174 1174 G G C . n B 2 19 G 19 1175 1175 G G C . n B 2 20 A 20 1176 1176 A A C . n B 2 21 G 21 1177 1177 G G C . n B 2 22 G 22 1178 1178 G G C . n B 2 23 A 23 1179 1179 A A C . n B 2 24 A 24 1180 1180 A A C . n B 2 25 G 25 1181 1181 G G C . n B 2 26 G 26 1182 1182 G G C . n B 2 27 A 27 1183 1183 A A C . n C 3 1 MET 1 1 1 MET MET A . n C 3 2 ALA 2 2 2 ALA ALA A . n C 3 3 SER 3 3 3 SER SER A . n C 3 4 ASN 4 4 4 ASN ASN A . n C 3 5 GLU 5 5 5 GLU GLU A . n C 3 6 VAL 6 6 6 VAL VAL A . n C 3 7 LEU 7 7 7 LEU LEU A . n C 3 8 VAL 8 8 8 VAL VAL A . n C 3 9 LEU 9 9 9 LEU LEU A . n C 3 10 ARG 10 10 10 ARG ARG A . n C 3 11 GLY 11 11 11 GLY GLY A . n C 3 12 THR 12 12 12 THR THR A . n C 3 13 LEU 13 13 13 LEU LEU A . n C 3 14 GLU 14 14 14 GLU GLU A . n C 3 15 GLY 15 15 15 GLY GLY A . n C 3 16 HIS 16 16 16 HIS HIS A . n C 3 17 ASN 17 17 17 ASN ASN A . n C 3 18 GLY 18 18 18 GLY GLY A . n C 3 19 TRP 19 19 19 TRP TRP A . n C 3 20 VAL 20 20 20 VAL VAL A . n C 3 21 THR 21 21 21 THR THR A . n C 3 22 SER 22 22 22 SER SER A . n C 3 23 LEU 23 23 23 LEU LEU A . n C 3 24 ALA 24 24 24 ALA ALA A . n C 3 25 THR 25 25 25 THR THR A . n C 3 26 SER 26 26 26 SER SER A . n C 3 27 ALA 27 27 27 ALA ALA A . n C 3 28 GLY 28 28 28 GLY GLY A . n C 3 29 GLN 29 29 29 GLN GLN A . n C 3 30 PRO 30 30 30 PRO PRO A . n C 3 31 ASN 31 31 31 ASN ASN A . n C 3 32 LEU 32 32 32 LEU LEU A . n C 3 33 LEU 33 33 33 LEU LEU A . n C 3 34 LEU 34 34 34 LEU LEU A . n C 3 35 SER 35 35 35 SER SER A . n C 3 36 ALA 36 36 36 ALA ALA A . n C 3 37 SER 37 37 37 SER SER A . n C 3 38 ARG 38 38 38 ARG ARG A . n C 3 39 ASP 39 39 39 ASP ASP A . n C 3 40 LYS 40 40 40 LYS LYS A . n C 3 41 THR 41 41 41 THR THR A . n C 3 42 LEU 42 42 42 LEU LEU A . n C 3 43 ILE 43 43 43 ILE ILE A . n C 3 44 SER 44 44 44 SER SER A . n C 3 45 TRP 45 45 45 TRP TRP A . n C 3 46 LYS 46 46 46 LYS LYS A . n C 3 47 LEU 47 47 47 LEU LEU A . n C 3 48 THR 48 48 48 THR THR A . n C 3 49 GLY 49 49 49 GLY GLY A . n C 3 50 ASP 50 50 50 ASP ASP A . n C 3 51 ASP 51 51 51 ASP ASP A . n C 3 52 GLN 52 52 52 GLN GLN A . n C 3 53 LYS 53 53 53 LYS LYS A . n C 3 54 PHE 54 54 54 PHE PHE A . n C 3 55 GLY 55 55 55 GLY GLY A . n C 3 56 VAL 56 56 56 VAL VAL A . n C 3 57 PRO 57 57 57 PRO PRO A . n C 3 58 VAL 58 58 58 VAL VAL A . n C 3 59 ARG 59 59 59 ARG ARG A . n C 3 60 SER 60 60 60 SER SER A . n C 3 61 PHE 61 61 61 PHE PHE A . n C 3 62 LYS 62 62 62 LYS LYS A . n C 3 63 GLY 63 63 63 GLY GLY A . n C 3 64 HIS 64 64 64 HIS HIS A . n C 3 65 SER 65 65 65 SER SER A . n C 3 66 HIS 66 66 66 HIS HIS A . n C 3 67 ILE 67 67 67 ILE ILE A . n C 3 68 VAL 68 68 68 VAL VAL A . n C 3 69 GLN 69 69 69 GLN GLN A . n C 3 70 ASP 70 70 70 ASP ASP A . n C 3 71 CYS 71 71 71 CYS CYS A . n C 3 72 THR 72 72 72 THR THR A . n C 3 73 LEU 73 73 73 LEU LEU A . n C 3 74 THR 74 74 74 THR THR A . n C 3 75 ALA 75 75 75 ALA ALA A . n C 3 76 ASP 76 76 76 ASP ASP A . n C 3 77 GLY 77 77 77 GLY GLY A . n C 3 78 ALA 78 78 78 ALA ALA A . n C 3 79 TYR 79 79 79 TYR TYR A . n C 3 80 ALA 80 80 80 ALA ALA A . n C 3 81 LEU 81 81 81 LEU LEU A . n C 3 82 SER 82 82 82 SER SER A . n C 3 83 ALA 83 83 83 ALA ALA A . n C 3 84 SER 84 84 84 SER SER A . n C 3 85 TRP 85 85 85 TRP TRP A . n C 3 86 ASP 86 86 86 ASP ASP A . n C 3 87 LYS 87 87 87 LYS LYS A . n C 3 88 THR 88 88 88 THR THR A . n C 3 89 LEU 89 89 89 LEU LEU A . n C 3 90 ARG 90 90 90 ARG ARG A . n C 3 91 LEU 91 91 91 LEU LEU A . n C 3 92 TRP 92 92 92 TRP TRP A . n C 3 93 ASP 93 93 93 ASP ASP A . n C 3 94 VAL 94 94 94 VAL VAL A . n C 3 95 ALA 95 95 95 ALA ALA A . n C 3 96 THR 96 96 96 THR THR A . n C 3 97 GLY 97 97 97 GLY GLY A . n C 3 98 GLU 98 98 98 GLU GLU A . n C 3 99 THR 99 99 99 THR THR A . n C 3 100 TYR 100 100 100 TYR TYR A . n C 3 101 GLN 101 101 101 GLN GLN A . n C 3 102 ARG 102 102 102 ARG ARG A . n C 3 103 PHE 103 103 103 PHE PHE A . n C 3 104 VAL 104 104 104 VAL VAL A . n C 3 105 GLY 105 105 105 GLY GLY A . n C 3 106 HIS 106 106 106 HIS HIS A . n C 3 107 LYS 107 107 107 LYS LYS A . n C 3 108 SER 108 108 108 SER SER A . n C 3 109 ASP 109 109 109 ASP ASP A . n C 3 110 VAL 110 110 110 VAL VAL A . n C 3 111 MET 111 111 111 MET MET A . n C 3 112 SER 112 112 112 SER SER A . n C 3 113 VAL 113 113 113 VAL VAL A . n C 3 114 ASP 114 114 114 ASP ASP A . n C 3 115 ILE 115 115 115 ILE ILE A . n C 3 116 ASP 116 116 116 ASP ASP A . n C 3 117 LYS 117 117 117 LYS LYS A . n C 3 118 LYS 118 118 118 LYS LYS A . n C 3 119 ALA 119 119 119 ALA ALA A . n C 3 120 SER 120 120 120 SER SER A . n C 3 121 MET 121 121 121 MET MET A . n C 3 122 ILE 122 122 122 ILE ILE A . n C 3 123 ILE 123 123 123 ILE ILE A . n C 3 124 SER 124 124 124 SER SER A . n C 3 125 GLY 125 125 125 GLY GLY A . n C 3 126 SER 126 126 126 SER SER A . n C 3 127 ARG 127 127 127 ARG ARG A . n C 3 128 ASP 128 128 128 ASP ASP A . n C 3 129 LYS 129 129 129 LYS LYS A . n C 3 130 THR 130 130 130 THR THR A . n C 3 131 ILE 131 131 131 ILE ILE A . n C 3 132 LYS 132 132 132 LYS LYS A . n C 3 133 VAL 133 133 133 VAL VAL A . n C 3 134 TRP 134 134 134 TRP TRP A . n C 3 135 THR 135 135 135 THR THR A . n C 3 136 ILE 136 136 136 ILE ILE A . n C 3 137 LYS 137 137 137 LYS LYS A . n C 3 138 GLY 138 138 138 GLY GLY A . n C 3 139 GLN 139 139 139 GLN GLN A . n C 3 140 CYS 140 140 140 CYS CYS A . n C 3 141 LEU 141 141 141 LEU LEU A . n C 3 142 ALA 142 142 142 ALA ALA A . n C 3 143 THR 143 143 143 THR THR A . n C 3 144 LEU 144 144 144 LEU LEU A . n C 3 145 LEU 145 145 145 LEU LEU A . n C 3 146 GLY 146 146 146 GLY GLY A . n C 3 147 HIS 147 147 147 HIS HIS A . n C 3 148 ASN 148 148 148 ASN ASN A . n C 3 149 ASP 149 149 149 ASP ASP A . n C 3 150 TRP 150 150 150 TRP TRP A . n C 3 151 VAL 151 151 151 VAL VAL A . n C 3 152 SER 152 152 152 SER SER A . n C 3 153 GLN 153 153 153 GLN GLN A . n C 3 154 VAL 154 154 154 VAL VAL A . n C 3 155 ARG 155 155 155 ARG ARG A . n C 3 156 VAL 156 156 156 VAL VAL A . n C 3 157 VAL 157 157 157 VAL VAL A . n C 3 158 PRO 158 158 158 PRO PRO A . n C 3 159 ASN 159 159 159 ASN ASN A . n C 3 160 GLU 160 160 160 GLU GLU A . n C 3 161 LYS 161 161 161 LYS LYS A . n C 3 162 ALA 162 162 162 ALA ALA A . n C 3 163 ASP 163 163 163 ASP ASP A . n C 3 164 ASP 164 164 164 ASP ASP A . n C 3 165 ASP 165 165 165 ASP ASP A . n C 3 166 SER 166 166 166 SER SER A . n C 3 167 VAL 167 167 167 VAL VAL A . n C 3 168 THR 168 168 168 THR THR A . n C 3 169 ILE 169 169 169 ILE ILE A . n C 3 170 ILE 170 170 170 ILE ILE A . n C 3 171 SER 171 171 171 SER SER A . n C 3 172 ALA 172 172 172 ALA ALA A . n C 3 173 GLY 173 173 173 GLY GLY A . n C 3 174 ASN 174 174 174 ASN ASN A . n C 3 175 ASP 175 175 175 ASP ASP A . n C 3 176 LYS 176 176 176 LYS LYS A . n C 3 177 MET 177 177 177 MET MET A . n C 3 178 VAL 178 178 178 VAL VAL A . n C 3 179 LYS 179 179 179 LYS LYS A . n C 3 180 ALA 180 180 180 ALA ALA A . n C 3 181 TRP 181 181 181 TRP TRP A . n C 3 182 ASN 182 182 182 ASN ASN A . n C 3 183 LEU 183 183 183 LEU LEU A . n C 3 184 ASN 184 184 184 ASN ASN A . n C 3 185 GLN 185 185 185 GLN GLN A . n C 3 186 PHE 186 186 186 PHE PHE A . n C 3 187 GLN 187 187 187 GLN GLN A . n C 3 188 ILE 188 188 188 ILE ILE A . n C 3 189 GLU 189 189 189 GLU GLU A . n C 3 190 ALA 190 190 190 ALA ALA A . n C 3 191 ASP 191 191 191 ASP ASP A . n C 3 192 PHE 192 192 192 PHE PHE A . n C 3 193 ILE 193 193 193 ILE ILE A . n C 3 194 GLY 194 194 194 GLY GLY A . n C 3 195 HIS 195 195 195 HIS HIS A . n C 3 196 ASN 196 196 196 ASN ASN A . n C 3 197 SER 197 197 197 SER SER A . n C 3 198 ASN 198 198 198 ASN ASN A . n C 3 199 ILE 199 199 199 ILE ILE A . n C 3 200 ASN 200 200 200 ASN ASN A . n C 3 201 THR 201 201 201 THR THR A . n C 3 202 LEU 202 202 202 LEU LEU A . n C 3 203 THR 203 203 203 THR THR A . n C 3 204 ALA 204 204 204 ALA ALA A . n C 3 205 SER 205 205 205 SER SER A . n C 3 206 PRO 206 206 206 PRO PRO A . n C 3 207 ASP 207 207 207 ASP ASP A . n C 3 208 GLY 208 208 208 GLY GLY A . n C 3 209 THR 209 209 209 THR THR A . n C 3 210 LEU 210 210 210 LEU LEU A . n C 3 211 ILE 211 211 211 ILE ILE A . n C 3 212 ALA 212 212 212 ALA ALA A . n C 3 213 SER 213 213 213 SER SER A . n C 3 214 ALA 214 214 214 ALA ALA A . n C 3 215 GLY 215 215 215 GLY GLY A . n C 3 216 LYS 216 216 216 LYS LYS A . n C 3 217 ASP 217 217 217 ASP ASP A . n C 3 218 GLY 218 218 218 GLY GLY A . n C 3 219 GLU 219 219 219 GLU GLU A . n C 3 220 ILE 220 220 220 ILE ILE A . n C 3 221 MET 221 221 221 MET MET A . n C 3 222 LEU 222 222 222 LEU LEU A . n C 3 223 TRP 223 223 223 TRP TRP A . n C 3 224 ASN 224 224 224 ASN ASN A . n C 3 225 LEU 225 225 225 LEU LEU A . n C 3 226 ALA 226 226 226 ALA ALA A . n C 3 227 ALA 227 227 227 ALA ALA A . n C 3 228 LYS 228 228 228 LYS LYS A . n C 3 229 LYS 229 229 229 LYS LYS A . n C 3 230 ALA 230 230 230 ALA ALA A . n C 3 231 MET 231 231 231 MET MET A . n C 3 232 TYR 232 232 232 TYR TYR A . n C 3 233 THR 233 233 233 THR THR A . n C 3 234 LEU 234 234 234 LEU LEU A . n C 3 235 SER 235 235 235 SER SER A . n C 3 236 ALA 236 236 236 ALA ALA A . n C 3 237 GLN 237 237 237 GLN GLN A . n C 3 238 ASP 238 238 238 ASP ASP A . n C 3 239 GLU 239 239 239 GLU GLU A . n C 3 240 VAL 240 240 240 VAL VAL A . n C 3 241 PHE 241 241 241 PHE PHE A . n C 3 242 SER 242 242 242 SER SER A . n C 3 243 LEU 243 243 243 LEU LEU A . n C 3 244 ALA 244 244 244 ALA ALA A . n C 3 245 PHE 245 245 245 PHE PHE A . n C 3 246 SER 246 246 246 SER SER A . n C 3 247 PRO 247 247 247 PRO PRO A . n C 3 248 ASN 248 248 248 ASN ASN A . n C 3 249 ARG 249 249 249 ARG ARG A . n C 3 250 TYR 250 250 250 TYR TYR A . n C 3 251 TRP 251 251 251 TRP TRP A . n C 3 252 LEU 252 252 252 LEU LEU A . n C 3 253 ALA 253 253 253 ALA ALA A . n C 3 254 ALA 254 254 254 ALA ALA A . n C 3 255 ALA 255 255 255 ALA ALA A . n C 3 256 THR 256 256 256 THR THR A . n C 3 257 ALA 257 257 257 ALA ALA A . n C 3 258 THR 258 258 258 THR THR A . n C 3 259 GLY 259 259 259 GLY GLY A . n C 3 260 ILE 260 260 260 ILE ILE A . n C 3 261 LYS 261 261 261 LYS LYS A . n C 3 262 VAL 262 262 262 VAL VAL A . n C 3 263 PHE 263 263 263 PHE PHE A . n C 3 264 SER 264 264 264 SER SER A . n C 3 265 LEU 265 265 265 LEU LEU A . n C 3 266 ASP 266 266 266 ASP ASP A . n C 3 267 PRO 267 267 267 PRO PRO A . n C 3 268 GLN 268 268 268 GLN GLN A . n C 3 269 TYR 269 269 269 TYR TYR A . n C 3 270 LEU 270 270 270 LEU LEU A . n C 3 271 VAL 271 271 271 VAL VAL A . n C 3 272 ASP 272 272 272 ASP ASP A . n C 3 273 ASP 273 273 273 ASP ASP A . n C 3 274 LEU 274 274 274 LEU LEU A . n C 3 275 ARG 275 275 275 ARG ARG A . n C 3 276 PRO 276 276 276 PRO PRO A . n C 3 277 GLU 277 277 277 GLU GLU A . n C 3 278 PHE 278 278 278 PHE PHE A . n C 3 279 ALA 279 279 279 ALA ALA A . n C 3 280 GLY 280 280 280 GLY GLY A . n C 3 281 TYR 281 281 281 TYR TYR A . n C 3 282 SER 282 282 282 SER SER A . n C 3 283 LYS 283 283 283 LYS LYS A . n C 3 284 ALA 284 284 284 ALA ALA A . n C 3 285 ALA 285 285 285 ALA ALA A . n C 3 286 GLU 286 286 286 GLU GLU A . n C 3 287 PRO 287 287 287 PRO PRO A . n C 3 288 HIS 288 288 288 HIS HIS A . n C 3 289 ALA 289 289 289 ALA ALA A . n C 3 290 VAL 290 290 290 VAL VAL A . n C 3 291 SER 291 291 291 SER SER A . n C 3 292 LEU 292 292 292 LEU LEU A . n C 3 293 ALA 293 293 293 ALA ALA A . n C 3 294 TRP 294 294 294 TRP TRP A . n C 3 295 SER 295 295 295 SER SER A . n C 3 296 ALA 296 296 296 ALA ALA A . n C 3 297 ASP 297 297 297 ASP ASP A . n C 3 298 GLY 298 298 298 GLY GLY A . n C 3 299 GLN 299 299 299 GLN GLN A . n C 3 300 THR 300 300 300 THR THR A . n C 3 301 LEU 301 301 301 LEU LEU A . n C 3 302 PHE 302 302 302 PHE PHE A . n C 3 303 ALA 303 303 303 ALA ALA A . n C 3 304 GLY 304 304 304 GLY GLY A . n C 3 305 TYR 305 305 305 TYR TYR A . n C 3 306 THR 306 306 306 THR THR A . n C 3 307 ASP 307 307 307 ASP ASP A . n C 3 308 ASN 308 308 308 ASN ASN A . n C 3 309 VAL 309 309 309 VAL VAL A . n C 3 310 ILE 310 310 310 ILE ILE A . n C 3 311 ARG 311 311 311 ARG ARG A . n C 3 312 VAL 312 312 312 VAL VAL A . n C 3 313 TRP 313 313 313 TRP TRP A . n C 3 314 GLN 314 314 314 GLN GLN A . n # _exptl.entry_id 1TRJ _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _refine.entry_id 1TRJ _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 11.70 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 314 _refine_hist.pdbx_number_atoms_nucleic_acid 68 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 382 _refine_hist.d_res_high 11.70 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 1TRJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1TRJ _struct.title 'Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1TRJ _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'RACK1, Ribosome, homology model, signaling protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GBLP_YEAST P38011 3 ;MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ ; 1 ? 2 PDB 1TRJ 1TRJ 1 ? ? ? 3 PDB 1TRJ 1TRJ 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1TRJ A 1 ? 314 ? P38011 1 ? 314 ? 1 314 2 2 1TRJ B 1 ? 41 ? 1TRJ 1115 ? 1155 ? 1115 1155 3 3 1TRJ C 1 ? 27 ? 1TRJ 1156 ? 1183 ? 1156 1183 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE ONLY COORDINATES FOR CA ATOMS FROM THE PROTEIN AND P ATOMS FROM THE NUCLEIC ACIDS WERE INCLUDED IN THE STRUCTURE. ; # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 1TRJ _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ;METHOD--USING A RAPID MOTIF SEARCH MODULE OF SPIDER (THE CRYO-EM MAP USED FOR FITTING WAS INTERPOLATED TO PIXEL SIZE 2.82) ; _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 1TRJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method '3D PROJECTION MATCHING GRADIENT WITH REGULARIZATION' _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size 2.930 _em_3d_reconstruction.resolution 11.700 _em_3d_reconstruction.magnification_calibration TMV _em_3d_reconstruction.details 'SPIDER PACKAGE' _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.pH 7.5 _em_buffer.details ? # _em_entity_assembly.id 1 _em_entity_assembly.name '80S ribosome' _em_entity_assembly.type RIBOSOME _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 1TRJ _em_imaging.id 1 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.specimen_id 1 _em_imaging.date 2001-02-01 _em_imaging.temperature 93.00 _em_imaging.microscope_model 'FEI TECNAI 20' _em_imaging.nominal_defocus_min 4900. _em_imaging.nominal_defocus_max 1400. _em_imaging.tilt_angle_min 0.00 _em_imaging.tilt_angle_max 0.00 _em_imaging.nominal_cs ? _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 52000 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'QUANTIFOIL HOLLEY CARBON FILM GRIDS' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 1TRJ _em_vitrification.id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'RAPID-FREEZING IN LIQUID ETHANE' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.specimen_id 1 _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 1TRJ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 1TRJ _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MET N N N N 337 MET CA C N S 338 MET C C N N 339 MET O O N N 340 MET CB C N N 341 MET CG C N N 342 MET SD S N N 343 MET CE C N N 344 MET OXT O N N 345 MET H H N N 346 MET H2 H N N 347 MET HA H N N 348 MET HB2 H N N 349 MET HB3 H N N 350 MET HG2 H N N 351 MET HG3 H N N 352 MET HE1 H N N 353 MET HE2 H N N 354 MET HE3 H N N 355 MET HXT H N N 356 PHE N N N N 357 PHE CA C N S 358 PHE C C N N 359 PHE O O N N 360 PHE CB C N N 361 PHE CG C Y N 362 PHE CD1 C Y N 363 PHE CD2 C Y N 364 PHE CE1 C Y N 365 PHE CE2 C Y N 366 PHE CZ C Y N 367 PHE OXT O N N 368 PHE H H N N 369 PHE H2 H N N 370 PHE HA H N N 371 PHE HB2 H N N 372 PHE HB3 H N N 373 PHE HD1 H N N 374 PHE HD2 H N N 375 PHE HE1 H N N 376 PHE HE2 H N N 377 PHE HZ H N N 378 PHE HXT H N N 379 PRO N N N N 380 PRO CA C N S 381 PRO C C N N 382 PRO O O N N 383 PRO CB C N N 384 PRO CG C N N 385 PRO CD C N N 386 PRO OXT O N N 387 PRO H H N N 388 PRO HA H N N 389 PRO HB2 H N N 390 PRO HB3 H N N 391 PRO HG2 H N N 392 PRO HG3 H N N 393 PRO HD2 H N N 394 PRO HD3 H N N 395 PRO HXT H N N 396 SER N N N N 397 SER CA C N S 398 SER C C N N 399 SER O O N N 400 SER CB C N N 401 SER OG O N N 402 SER OXT O N N 403 SER H H N N 404 SER H2 H N N 405 SER HA H N N 406 SER HB2 H N N 407 SER HB3 H N N 408 SER HG H N N 409 SER HXT H N N 410 THR N N N N 411 THR CA C N S 412 THR C C N N 413 THR O O N N 414 THR CB C N R 415 THR OG1 O N N 416 THR CG2 C N N 417 THR OXT O N N 418 THR H H N N 419 THR H2 H N N 420 THR HA H N N 421 THR HB H N N 422 THR HG1 H N N 423 THR HG21 H N N 424 THR HG22 H N N 425 THR HG23 H N N 426 THR HXT H N N 427 TRP N N N N 428 TRP CA C N S 429 TRP C C N N 430 TRP O O N N 431 TRP CB C N N 432 TRP CG C Y N 433 TRP CD1 C Y N 434 TRP CD2 C Y N 435 TRP NE1 N Y N 436 TRP CE2 C Y N 437 TRP CE3 C Y N 438 TRP CZ2 C Y N 439 TRP CZ3 C Y N 440 TRP CH2 C Y N 441 TRP OXT O N N 442 TRP H H N N 443 TRP H2 H N N 444 TRP HA H N N 445 TRP HB2 H N N 446 TRP HB3 H N N 447 TRP HD1 H N N 448 TRP HE1 H N N 449 TRP HE3 H N N 450 TRP HZ2 H N N 451 TRP HZ3 H N N 452 TRP HH2 H N N 453 TRP HXT H N N 454 TYR N N N N 455 TYR CA C N S 456 TYR C C N N 457 TYR O O N N 458 TYR CB C N N 459 TYR CG C Y N 460 TYR CD1 C Y N 461 TYR CD2 C Y N 462 TYR CE1 C Y N 463 TYR CE2 C Y N 464 TYR CZ C Y N 465 TYR OH O N N 466 TYR OXT O N N 467 TYR H H N N 468 TYR H2 H N N 469 TYR HA H N N 470 TYR HB2 H N N 471 TYR HB3 H N N 472 TYR HD1 H N N 473 TYR HD2 H N N 474 TYR HE1 H N N 475 TYR HE2 H N N 476 TYR HH H N N 477 TYR HXT H N N 478 U OP3 O N N 479 U P P N N 480 U OP1 O N N 481 U OP2 O N N 482 U "O5'" O N N 483 U "C5'" C N N 484 U "C4'" C N R 485 U "O4'" O N N 486 U "C3'" C N S 487 U "O3'" O N N 488 U "C2'" C N R 489 U "O2'" O N N 490 U "C1'" C N R 491 U N1 N N N 492 U C2 C N N 493 U O2 O N N 494 U N3 N N N 495 U C4 C N N 496 U O4 O N N 497 U C5 C N N 498 U C6 C N N 499 U HOP3 H N N 500 U HOP2 H N N 501 U "H5'" H N N 502 U "H5''" H N N 503 U "H4'" H N N 504 U "H3'" H N N 505 U "HO3'" H N N 506 U "H2'" H N N 507 U "HO2'" H N N 508 U "H1'" H N N 509 U H3 H N N 510 U H5 H N N 511 U H6 H N N 512 VAL N N N N 513 VAL CA C N S 514 VAL C C N N 515 VAL O O N N 516 VAL CB C N N 517 VAL CG1 C N N 518 VAL CG2 C N N 519 VAL OXT O N N 520 VAL H H N N 521 VAL H2 H N N 522 VAL HA H N N 523 VAL HB H N N 524 VAL HG11 H N N 525 VAL HG12 H N N 526 VAL HG13 H N N 527 VAL HG21 H N N 528 VAL HG22 H N N 529 VAL HG23 H N N 530 VAL HXT H N N 531 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LYS N CA sing N N 307 LYS N H sing N N 308 LYS N H2 sing N N 309 LYS CA C sing N N 310 LYS CA CB sing N N 311 LYS CA HA sing N N 312 LYS C O doub N N 313 LYS C OXT sing N N 314 LYS CB CG sing N N 315 LYS CB HB2 sing N N 316 LYS CB HB3 sing N N 317 LYS CG CD sing N N 318 LYS CG HG2 sing N N 319 LYS CG HG3 sing N N 320 LYS CD CE sing N N 321 LYS CD HD2 sing N N 322 LYS CD HD3 sing N N 323 LYS CE NZ sing N N 324 LYS CE HE2 sing N N 325 LYS CE HE3 sing N N 326 LYS NZ HZ1 sing N N 327 LYS NZ HZ2 sing N N 328 LYS NZ HZ3 sing N N 329 LYS OXT HXT sing N N 330 MET N CA sing N N 331 MET N H sing N N 332 MET N H2 sing N N 333 MET CA C sing N N 334 MET CA CB sing N N 335 MET CA HA sing N N 336 MET C O doub N N 337 MET C OXT sing N N 338 MET CB CG sing N N 339 MET CB HB2 sing N N 340 MET CB HB3 sing N N 341 MET CG SD sing N N 342 MET CG HG2 sing N N 343 MET CG HG3 sing N N 344 MET SD CE sing N N 345 MET CE HE1 sing N N 346 MET CE HE2 sing N N 347 MET CE HE3 sing N N 348 MET OXT HXT sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TRP N CA sing N N 419 TRP N H sing N N 420 TRP N H2 sing N N 421 TRP CA C sing N N 422 TRP CA CB sing N N 423 TRP CA HA sing N N 424 TRP C O doub N N 425 TRP C OXT sing N N 426 TRP CB CG sing N N 427 TRP CB HB2 sing N N 428 TRP CB HB3 sing N N 429 TRP CG CD1 doub Y N 430 TRP CG CD2 sing Y N 431 TRP CD1 NE1 sing Y N 432 TRP CD1 HD1 sing N N 433 TRP CD2 CE2 doub Y N 434 TRP CD2 CE3 sing Y N 435 TRP NE1 CE2 sing Y N 436 TRP NE1 HE1 sing N N 437 TRP CE2 CZ2 sing Y N 438 TRP CE3 CZ3 doub Y N 439 TRP CE3 HE3 sing N N 440 TRP CZ2 CH2 doub Y N 441 TRP CZ2 HZ2 sing N N 442 TRP CZ3 CH2 sing Y N 443 TRP CZ3 HZ3 sing N N 444 TRP CH2 HH2 sing N N 445 TRP OXT HXT sing N N 446 TYR N CA sing N N 447 TYR N H sing N N 448 TYR N H2 sing N N 449 TYR CA C sing N N 450 TYR CA CB sing N N 451 TYR CA HA sing N N 452 TYR C O doub N N 453 TYR C OXT sing N N 454 TYR CB CG sing N N 455 TYR CB HB2 sing N N 456 TYR CB HB3 sing N N 457 TYR CG CD1 doub Y N 458 TYR CG CD2 sing Y N 459 TYR CD1 CE1 sing Y N 460 TYR CD1 HD1 sing N N 461 TYR CD2 CE2 doub Y N 462 TYR CD2 HD2 sing N N 463 TYR CE1 CZ doub Y N 464 TYR CE1 HE1 sing N N 465 TYR CE2 CZ sing Y N 466 TYR CE2 HE2 sing N N 467 TYR CZ OH sing N N 468 TYR OH HH sing N N 469 TYR OXT HXT sing N N 470 U OP3 P sing N N 471 U OP3 HOP3 sing N N 472 U P OP1 doub N N 473 U P OP2 sing N N 474 U P "O5'" sing N N 475 U OP2 HOP2 sing N N 476 U "O5'" "C5'" sing N N 477 U "C5'" "C4'" sing N N 478 U "C5'" "H5'" sing N N 479 U "C5'" "H5''" sing N N 480 U "C4'" "O4'" sing N N 481 U "C4'" "C3'" sing N N 482 U "C4'" "H4'" sing N N 483 U "O4'" "C1'" sing N N 484 U "C3'" "O3'" sing N N 485 U "C3'" "C2'" sing N N 486 U "C3'" "H3'" sing N N 487 U "O3'" "HO3'" sing N N 488 U "C2'" "O2'" sing N N 489 U "C2'" "C1'" sing N N 490 U "C2'" "H2'" sing N N 491 U "O2'" "HO2'" sing N N 492 U "C1'" N1 sing N N 493 U "C1'" "H1'" sing N N 494 U N1 C2 sing N N 495 U N1 C6 sing N N 496 U C2 O2 doub N N 497 U C2 N3 sing N N 498 U N3 C4 sing N N 499 U N3 H3 sing N N 500 U C4 O4 doub N N 501 U C4 C5 sing N N 502 U C5 C6 doub N N 503 U C5 H5 sing N N 504 U C6 H6 sing N N 505 VAL N CA sing N N 506 VAL N H sing N N 507 VAL N H2 sing N N 508 VAL CA C sing N N 509 VAL CA CB sing N N 510 VAL CA HA sing N N 511 VAL C O doub N N 512 VAL C OXT sing N N 513 VAL CB CG1 sing N N 514 VAL CB CG2 sing N N 515 VAL CB HB sing N N 516 VAL CG1 HG11 sing N N 517 VAL CG1 HG12 sing N N 518 VAL CG1 HG13 sing N N 519 VAL CG2 HG21 sing N N 520 VAL CG2 HG22 sing N N 521 VAL CG2 HG23 sing N N 522 VAL OXT HXT sing N N 523 # _em_ctf_correction.id 1 _em_ctf_correction.details 'CTF CORRECTION OF 3D MAPS BY WIENER FILTERATION' _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 15.00 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_software.id 1 _em_software.name SPIDER _em_software.version ? _em_software.category RECONSTRUCTION _em_software.details ? _em_software.image_processing_id 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 32 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_coordinate_model.asym_id _pdbx_coordinate_model.type A 'P ATOMS ONLY' B 'P ATOMS ONLY' C 'CA ATOMS ONLY' # _atom_sites.entry_id 1TRJ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C P # loop_