HEADER HYDROLASE (METALLOPROTEASE) 02-SEP-94 1TRL TITLE NMR SOLUTION STRUCTURE OF THE C-TERMINAL FRAGMENT 255-316 OF TITLE 2 THERMOLYSIN: A DIMER FORMED BY SUBUNITS HAVING THE NATIVE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN FRAGMENT 255 - 316; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.24.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS HYDROLASE (METALLOPROTEASE) EXPDTA SOLUTION NMR NUMMDL 8 AUTHOR M.RICO,M.A.JIMENEZ,C.GONZALEZ,V.DE FILIPPIS,A.FONTANA REVDAT 3 02-MAR-22 1TRL 1 REMARK REVDAT 2 24-FEB-09 1TRL 1 VERSN REVDAT 1 07-FEB-95 1TRL 0 JRNL AUTH M.RICO,M.A.JIMENEZ,C.GONZALEZ,V.DE FILIPPIS,A.FONTANA JRNL TITL NMR SOLUTION STRUCTURE OF THE C-TERMINAL FRAGMENT 255-316 OF JRNL TITL 2 THERMOLYSIN: A DIMER FORMED BY SUBUNITS HAVING THE NATIVE JRNL TITL 3 STRUCTURE. JRNL REF BIOCHEMISTRY V. 33 14834 1994 JRNL REFN ISSN 0006-2960 JRNL PMID 7993910 JRNL DOI 10.1021/BI00253A023 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.A.JIMENEZ,M.BRUIX,C.GONZALEZ,F.J.BLANCO,J.L.NIETO, REMARK 1 AUTH 2 J.HERRANZ,M.RICO REMARK 1 TITL CD AND H-NMR STUDIES ON THE CONFORMATIONAL PROPERTIES OF REMARK 1 TITL 2 PEPTIDE FRAGMENTS FROM THE C-TERMINAL DOMAIN OF THERMOLYSIN REMARK 1 REF EUR.J.BIOCHEM. V. 211 569 1993 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.DALZOPPO,C.VITA,A.FONTANA REMARK 1 TITL FOLDING OF THERMOLYSIN FRAGMENTS: IDENTIFICATION OF THE REMARK 1 TITL 2 MINIMUM SIZE OF A CARBOXYL-TERMINAL FRAGMENT THAT CAN FOLD REMARK 1 TITL 3 INTO A STABLE NATIVE-LIKE STRUCTURE REMARK 1 REF J.MOL.BIOL. V. 182 331 1985 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GROMOS REMARK 3 AUTHORS : VAN GUNSTEREN,BERENDSEN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TRL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176807. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 297 HG SER B 300 1.58 REMARK 500 HH TYR B 274 OE1 GLN B 290 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 274 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 1 ARG A 285 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 TYR A 296 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 1 ARG B 260 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 ARG A 260 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 TYR A 274 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 2 ARG A 285 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 TYR A 296 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 2 TYR B 296 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 3 TYR A 274 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 3 TYR B 268 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 3 TYR B 274 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 4 ARG A 260 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 4 PHE A 267 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 4 TYR A 274 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 4 GLN A 301 CG - CD - OE1 ANGL. DEV. = 20.7 DEGREES REMARK 500 4 GLN A 301 CG - CD - NE2 ANGL. DEV. = -20.6 DEGREES REMARK 500 4 ARG B 260 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 4 ARG B 260 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 4 TYR B 268 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 4 ARG B 285 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 4 VAL B 303 CG1 - CB - CG2 ANGL. DEV. = -10.0 DEGREES REMARK 500 5 ARG B 269 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 5 PHE B 281 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 6 TYR B 274 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 7 ARG A 285 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 260 -33.29 -29.27 REMARK 500 1 ILE B 258 -81.11 33.98 REMARK 500 1 ARG B 260 -79.01 23.37 REMARK 500 1 THR B 278 54.97 -90.20 REMARK 500 1 THR B 299 21.10 -78.04 REMARK 500 1 ALA B 312 32.40 -94.79 REMARK 500 2 ARG A 260 -91.42 -137.09 REMARK 500 2 THR A 278 39.24 -94.28 REMARK 500 2 TYR A 296 -34.91 -161.94 REMARK 500 2 VAL B 256 108.44 -52.10 REMARK 500 2 ARG B 260 -37.30 -28.02 REMARK 500 2 VAL B 315 30.41 -83.77 REMARK 500 3 ARG A 260 -78.33 10.70 REMARK 500 3 SER A 298 -51.24 -9.10 REMARK 500 3 THR A 299 56.82 -66.81 REMARK 500 3 ARG B 260 -64.21 -105.71 REMARK 500 3 THR B 278 54.49 -99.56 REMARK 500 4 THR A 278 40.45 -100.00 REMARK 500 4 ILE B 258 -81.02 43.71 REMARK 500 4 ASP B 261 -54.93 -134.29 REMARK 500 4 LEU B 263 -36.58 -39.70 REMARK 500 4 THR B 278 35.25 -97.58 REMARK 500 4 THR B 299 47.93 -80.90 REMARK 500 5 ARG A 260 -82.33 -117.80 REMARK 500 5 ILE B 258 -134.75 -111.58 REMARK 500 5 THR B 278 38.04 -92.79 REMARK 500 5 THR B 299 40.14 -72.40 REMARK 500 6 ARG A 260 -76.37 -117.35 REMARK 500 6 THR A 278 79.57 -102.86 REMARK 500 6 THR A 299 22.40 -71.32 REMARK 500 6 ARG B 260 -64.00 -15.21 REMARK 500 6 LEU B 263 -36.95 -34.83 REMARK 500 6 THR B 278 36.99 -75.11 REMARK 500 6 LEU B 295 -70.33 -76.69 REMARK 500 6 THR B 299 49.25 -78.63 REMARK 500 6 VAL B 313 90.38 -66.97 REMARK 500 7 VAL A 256 101.50 -59.44 REMARK 500 7 ARG A 260 -59.07 -174.20 REMARK 500 7 SER A 279 95.17 -60.38 REMARK 500 7 GLN A 301 6.55 -68.95 REMARK 500 7 ILE B 258 -93.37 37.79 REMARK 500 7 GLN B 301 -6.78 -56.08 REMARK 500 8 THR A 299 40.21 -67.84 REMARK 500 8 ILE B 258 -75.17 -19.43 REMARK 500 8 THR B 278 58.06 -92.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 268 0.07 SIDE CHAIN REMARK 500 1 TYR A 296 0.10 SIDE CHAIN REMARK 500 1 TYR B 268 0.07 SIDE CHAIN REMARK 500 1 TYR B 274 0.14 SIDE CHAIN REMARK 500 1 PHE B 281 0.10 SIDE CHAIN REMARK 500 2 TYR A 268 0.12 SIDE CHAIN REMARK 500 2 PHE A 281 0.10 SIDE CHAIN REMARK 500 2 TYR A 296 0.24 SIDE CHAIN REMARK 500 2 TYR B 268 0.10 SIDE CHAIN REMARK 500 3 TYR A 268 0.11 SIDE CHAIN REMARK 500 3 PHE A 281 0.11 SIDE CHAIN REMARK 500 3 TYR A 296 0.09 SIDE CHAIN REMARK 500 3 PHE A 310 0.08 SIDE CHAIN REMARK 500 3 TYR B 274 0.17 SIDE CHAIN REMARK 500 3 PHE B 281 0.10 SIDE CHAIN REMARK 500 3 TYR B 296 0.08 SIDE CHAIN REMARK 500 4 PHE A 267 0.10 SIDE CHAIN REMARK 500 4 TYR A 274 0.09 SIDE CHAIN REMARK 500 4 TYR B 268 0.12 SIDE CHAIN REMARK 500 4 TYR B 274 0.09 SIDE CHAIN REMARK 500 4 PHE B 281 0.10 SIDE CHAIN REMARK 500 4 TYR B 296 0.08 SIDE CHAIN REMARK 500 5 TYR A 268 0.10 SIDE CHAIN REMARK 500 5 TYR A 274 0.08 SIDE CHAIN REMARK 500 5 TYR A 296 0.08 SIDE CHAIN REMARK 500 5 TYR B 296 0.07 SIDE CHAIN REMARK 500 5 PHE B 310 0.08 SIDE CHAIN REMARK 500 6 TYR A 268 0.11 SIDE CHAIN REMARK 500 6 PHE A 281 0.10 SIDE CHAIN REMARK 500 6 TYR A 296 0.08 SIDE CHAIN REMARK 500 6 TYR B 296 0.13 SIDE CHAIN REMARK 500 7 TYR B 268 0.08 SIDE CHAIN REMARK 500 7 TYR B 274 0.10 SIDE CHAIN REMARK 500 7 TYR B 296 0.06 SIDE CHAIN REMARK 500 8 GLN A 308 0.07 SIDE CHAIN REMARK 500 8 PHE A 310 0.08 SIDE CHAIN REMARK 500 8 TYR B 274 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 ASP B 261 -10.27 REMARK 500 3 SER A 279 11.40 REMARK 500 3 GLY B 259 -14.84 REMARK 500 4 ILE A 258 -10.80 REMARK 500 4 VAL A 306 -11.47 REMARK 500 4 PRO B 277 -11.45 REMARK 500 4 ALA B 312 -10.01 REMARK 500 5 ILE A 258 -11.14 REMARK 500 5 ALA A 286 -10.47 REMARK 500 5 VAL B 313 11.39 REMARK 500 6 ILE A 258 -12.05 REMARK 500 6 GLY B 259 -10.65 REMARK 500 7 ILE A 258 -10.93 REMARK 500 7 GLY B 259 -10.58 REMARK 500 8 GLY A 259 -10.85 REMARK 500 8 THR A 278 11.66 REMARK 500 8 ALA A 309 -10.79 REMARK 500 8 VAL A 313 11.50 REMARK 500 REMARK 500 REMARK: NULL DBREF 1TRL A 255 316 UNP P00800 THER_BACTH 255 316 DBREF 1TRL B 255 316 UNP P00800 THER_BACTH 255 316 SEQRES 1 A 62 VAL VAL GLY ILE GLY ARG ASP LYS LEU GLY LYS ILE PHE SEQRES 2 A 62 TYR ARG ALA LEU THR GLN TYR LEU THR PRO THR SER ASN SEQRES 3 A 62 PHE SER GLN LEU ARG ALA ALA ALA VAL GLN SER ALA THR SEQRES 4 A 62 ASP LEU TYR GLY SER THR SER GLN GLU VAL ALA SER VAL SEQRES 5 A 62 LYS GLN ALA PHE ASP ALA VAL GLY VAL LYS SEQRES 1 B 62 VAL VAL GLY ILE GLY ARG ASP LYS LEU GLY LYS ILE PHE SEQRES 2 B 62 TYR ARG ALA LEU THR GLN TYR LEU THR PRO THR SER ASN SEQRES 3 B 62 PHE SER GLN LEU ARG ALA ALA ALA VAL GLN SER ALA THR SEQRES 4 B 62 ASP LEU TYR GLY SER THR SER GLN GLU VAL ALA SER VAL SEQRES 5 B 62 LYS GLN ALA PHE ASP ALA VAL GLY VAL LYS HELIX 1 1 LYS A 262 LEU A 275 1 14 HELIX 2 2 ASN A 280 GLY A 297 1 18 HELIX 3 3 SER A 300 GLY A 314 1 15 HELIX 4 4 GLY B 259 LYS B 262 5 4 HELIX 5 5 LEU B 263 GLN B 273 1 11 HELIX 6 6 ASN B 280 GLY B 297 1 18 HELIX 7 7 SER B 300 ALA B 312 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1