HEADER LIGASE (SYNTHETASE) 12-JUL-82 1TS1 OBSLTE 15-JAN-90 1TS1 2TS1 TITLE TYROSYL-T/RNA$ SYNTHETASE FORMS A MONONUCLEOTIDE-BINDING TITLE 2 FOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS LIGASE (SYNTHETASE) EXPDTA X-RAY DIFFRACTION AUTHOR T.N.BHAT,D.M.BLOW,P.BRICK,J.NYBORG REVDAT 4 15-JAN-90 1TS1 3 OBSLTE REVDAT 3 17-JUL-84 1TS1 1 REMARK REVDAT 2 30-SEP-83 1TS1 1 REVDAT REVDAT 1 31-AUG-82 1TS1 0 JRNL AUTH T.N.BHAT,D.M.BLOW,P.BRICK,J.NYBORG JRNL TITL TYROSYL-T/RNA SYNTHETASE FORMS A JRNL TITL 2 MONONUCLEOTIDE-BINDING FOLD JRNL REF J.MOL.BIOL. V. 158 699 1982 JRNL REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.MONTEILHET,D.M.BLOW,P.BRICK REMARK 1 TITL INTERACTION OF CRYSTALLINE TYROSOL-T/RNA REMARK 1 TITL 2 SYNTHETASE WITH ADENOSINE, ADENOSINE REMARK 1 TITL 3 MONOPHOSPHATE, ADENOSINE TRIPHOSPHATE AND REMARK 1 TITL 4 PYROPHOSPHATE IN THE PRESENCE OF TYROSINOL REMARK 1 REF J.MOL.BIOL. V. 173 477 1984 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.N.BHAT,D.M.BLOW REMARK 1 TITL A DENSITY-MODIFICATION METHOD FOR THE IMPROVEMENT REMARK 1 TITL 2 OF POORLY RESOLVED PROTEIN ELECTRON-DENSITY MAPS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.A V. 38 21 1982 REMARK 1 REFN ASTM ACACBN DK ISSN 0567-7394 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.MONTEILHET,D.M.BLOW REMARK 1 TITL BINDING OF TYROSINE, ADENOSINE TRIPHOSPHATE AND REMARK 1 TITL 2 ANALOGUES TO CRYSTALLINE TYROSYL TRANSFER /RNA REMARK 1 TITL 3 SYNTHETASE REMARK 1 REF J.MOL.BIOL. V. 122 407 1978 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH D.M.BLOW,C.MONTEILHET,J.R.RUBIN REMARK 1 TITL STRUCTURE OF AMINOACYL T/RNA SYNTHETASES REMARK 1 REF PROC./FEBS MEET. V. 52 59 1978 REMARK 1 REFN ASTM FEBPBY UK ISSN 0071-4402 REMARK 1 REFERENCE 5 REMARK 1 AUTH D.M.BLOW,M.J.IRWIN,J.NYBORG REMARK 1 TITL THE PEPTIDE CHAIN OF TYROSYL T/RNA SYNTHETASE. NO REMARK 1 TITL 2 EVIDENCE FOR A SUPER-SECONDARY STRUCTURE OF FOUR REMARK 1 TITL 3 ALPHA-HELICES REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMM. V. 76 728 1977 REMARK 1 REFN ASTM BBRCA9 US ISSN 0006-291X REMARK 1 REFERENCE 6 REMARK 1 AUTH M.J.IRWIN,J.NYBORG,B.R.REID,D.M.BLOW REMARK 1 TITL THE CRYSTAL STRUCTURE OF TYROSYL-TRANSFER /RNA REMARK 1 TITL 2 SYNTHETASE AT 2.7 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 105 577 1976 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 7 REMARK 1 AUTH B.R.REID,G.L.E.KOCH,Y.BOULANGER,B.S.HARTLEY, REMARK 1 AUTH 2 D.M.BLOW REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION REMARK 1 TITL 2 STUDIES ON TYROSYL-TRANSFER /RNA SYNTHETASE FROM REMARK 1 TITL 3 BACILLUS STEAROTHERMOPHILUS REMARK 1 REF J.MOL.BIOL. V. 80 199 1973 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NULL ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 321 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TS1 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 1TS1 ALPHA-CARBON POSITIONS FOR RESIDUES 81-86, 154-159, REMARK 5 1TS1 233-238, 319-321 ARE MORE UNCERTAIN THAN THE REMARK 5 REMAINDER. 1TS1 ALPHA-CARBON POSITIONS FOR RESIDUES 322-419 REMARK 5 ARE NOT KNOWN. 1TS1 REMARK 6 REMARK 6 1TS1 CORRECTION. INSERT REVDAT RECORDS. 30-SEP-83. 1TS1 REMARK 7 REMARK 7 1TS1 CORRECTION. INSERT NEW PUBLICATION AS REFERENCE 1 AND REMARK 7 1TS1 RENUMBER THE OTHERS. 17-JUL-84. 1TS1 REMARK 8 REMARK 8 1TS1 THIS ENTRY IS OBSOLETE. 15-JAN-90. 1TS1 REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,1/3+Z REMARK 290 3555 -X+Y,-X,2/3+Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,2/3-Z REMARK 290 6555 -X,-X+Y,1/3-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866080 0.000000 0.00000 REMARK 290 SMTRY2 2 0.865971 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.19537 REMARK 290 SMTRY1 3 -0.500000 0.866080 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.865971 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 158.39075 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 -0.500000 -0.866080 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.865971 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 158.39075 REMARK 290 SMTRY1 6 -0.500000 0.866080 0.000000 0.00000 REMARK 290 SMTRY2 6 0.865971 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.19537 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 SEQRES 1 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 3 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 4 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 5 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 6 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 7 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 8 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 9 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 10 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 11 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 12 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 13 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 14 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 15 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 16 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 17 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 18 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 19 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 20 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 21 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 22 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 23 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 24 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 25 321 UNK UNK UNK UNK UNK UNK UNK UNK UNK FTNOTE 1 SEE REMARK 5. HELIX 1 H1 UNK 3 UNK 9 1 7 HELIX 2 H2 UNK 19 UNK 26 1 8 HELIX 3 H3 UNK 47 UNK 61 1 15 HELIX 4 H4 UNK 71 UNK 74 1 4 HELIX 5 H5 UNK 91 UNK 108 1 18 HELIX 6 H6 UNK 123 UNK 128 1 6 HELIX 7 H7 UNK 132 UNK 142 1 11 HELIX 8 H8 UNK 145 UNK 151 1 7 HELIX 9 H9 UNK 156 UNK 159 1UNCERTAIN 4 HELIX 10 H10 UNK 164 UNK 183 1 20 HELIX 11 H11 UNK 193 UNK 209 1 17 HELIX 12 H12 UNK 248 UNK 255 1 8 HELIX 13 H13 UNK 260 UNK 269 1 10 HELIX 14 H14 UNK 275 UNK 284 1 10 HELIX 15 H15 UNK 294 UNK 306 1 13 HELIX 16 H16 UNK 310 UNK 319 1 10 SHEET 1 S1 6 UNK 15 UNK 16 0 SHEET 2 S1 6 UNK 215 UNK 220 -1 SHEET 3 S1 6 UNK 188 UNK 190 1 SHEET 4 S1 6 UNK 31 UNK 38 1 SHEET 5 S1 6 UNK 66 UNK 69 1 SHEET 6 S1 6 UNK 118 UNK 122 1 CRYST1 64.460 64.460 237.600 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015513 -0.008957 0.000000 0.00000 SCALE2 0.015513 0.008957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004209 0.00000