HEADER GLYCOPROTEIN 08-MAR-96 1TSG OBSLTE 07-NOV-03 1TSG 1O7B TITLE NMR STUDY OF THE LINK MODULE FROM TSG-6, MINIMIZED AVERAGE TITLE 2 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TSG-6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LINK MODULE RESIDUES 36 - 133; COMPND 5 SYNONYM: PROTEOGLYCAN TANDEM REPEAT, PTR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 CELL_LINE: BL21; SOURCE 4 CELL: IL-1 STIMULATED FIBROBLAST; SOURCE 5 GENE: POTENTIAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRK172 KEYWDS LINK MODULE, PROTEOGLYCAN TANDEM REPEAT, HYALURONAN-BINDING, KEYWDS 2 DOMAIN, CARTILAGE, GLYCOPROTEIN, CELL ADHESION EXPDTA NMR AUTHOR D.KOHDA,C.J.MORTON,I.D.CAMPBELL,A.J.DAY REVDAT 1 01-APR-97 1TSG 0 JRNL AUTH D.KOHDA,C.J.MORTON,A.A.PARKAR,H.HATANAKA, JRNL AUTH 2 F.M.INAGAKI,I.D.CAMPBELL,A.J.DAY JRNL TITL SOLUTION STRUCTURE OF THE LINK MODULE: A JRNL TITL 2 HYALURONAN-BINDING DOMAIN INVOLVED IN JRNL TITL 3 EXTRACELLULAR MATRIX STABILITY AND CELL MIGRATION. JRNL REF CELL V. 86 767 1996 JRNL REFN ASTM CELLB5 US REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.DAY,R.T.APLIN,A.C.WILLIS REMARK 1 TITL OVEREXPRESSION, PURIFICATION, AND REFOLDING OF REMARK 1 TITL 2 LINK MODULE FROM HUMAN TSG-6 IN ESCHERICHIA COLI: REMARK 1 TITL 3 EFFECT OF TEMPERATURE, MEDIA, AND MUTAGENESIS ON REMARK 1 TITL 4 LYSINE MISINCORPORATION AT ARGININE AGA CODONS REMARK 1 REF PROTEIN EXPRESSION PURIF. V. 8 1 1996 REMARK 1 REFN ASTM PEXPEJ US ISSN 1046-5928 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR V3.1 V3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: X-PLOR STANDARD PARAMETERS FOR BONDS REMARK 3 AND ANGLES REMARK 4 REMARK 4 1TSG COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 6 REMARK 6 TWENTY STRUCTURES WERE CALCULATED USING XPLOR. REMARK 6 THE MEAN STRUCTURE WAS OBTAINED BY AVERAGING THE REMARK 6 COORDINATES OF THE INDIVIDUAL STRUCTURES AND SUBJECTING THE REMARK 6 RESULTING COORDINATES TO FURTHER RESTRAINED MINIMIZATION. REMARK 6 ATOMIC RMS DIFFERENCES FOR RESIDUES 2-93 REMARK 6 BACKBONE(N, CA, C') 0.54+/-0.09 A REMARK 6 ALL HEAVY ATOMS 0.99+/-0.11 A REMARK 7 REMARK 7 THE THERMAL PARAMETERS GIVEN IN THIS ENTRY REPRESENT THE REMARK 7 THE AVERAGE OF THE RMS DIFFERENCES PER ATOM BETWEEN THE REMARK 7 INDIVIDUAL STRUCTURES AND THE MEAN STRUCTURE (IN REMARK 7 ANGSTROMS). REMARK 8 REMARK 8 ALL PEPTIDE BONDS ARE IN THE TRANS CONFORMATION. REMARK 9 REMARK 9 HYDROGEN ATOMS IN THIS ENTRY HAVE BEEN ASSIGNED NAMES REMARK 9 CONSISTENT WITH THE RECOMMENDATIONS OF THE IUPAC-IUB REMARK 9 COMMISSION ON BIOCHEMICAL NOMENCLATURE (SEE,E.G., J.MOL. REMARK 9 BIOL. 52, 1-17 (1970)). THE PROTEIN DATA BANK HAS FOLLOWED REMARK 9 RULE 4.4 OF THE RECOMMENDATIONS WITH THE FOLLOWING REMARK 9 MODIFICATION - WHEN MORE THAN ONE HYDROGEN ATOM IS BONDED REMARK 9 TO A SINGLE NON-HYDROGEN ATOM, THE HYDROGEN ATOM NUMBER REMARK 9 DESIGNATION IS GIVEN AS THE FIRST CHARACTER OF THE ATOM REMARK 9 NAME RATHER THAN AS THE LAST CHARACTER (E.G. H*BETA*1 IS REMARK 9 DENOTED AS 1HB). REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O LEU A 30 O TYR A 91 2.11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 12 -172.05 131.29 REMARK 500 LYS A 13 152.58 86.00 REMARK 500 LEU A 14 86.88 121.53 REMARK 500 GLN A 35 137.74 100.40 REMARK 500 LEU A 36 -89.70 55.14 REMARK 500 ALA A 39 -36.66 80.51 REMARK 500 PHE A 44 169.93 50.16 REMARK 500 ILE A 61 7.85 122.81 REMARK 500 ASP A 77 123.30 62.25 REMARK 500 ILE A 80 -124.80 28.99 REMARK 500 LEU A 82 -33.62 97.30 REMARK 500 TRP A 88 -179.87 -11.65 REMARK 500 TYR A 93 -111.75 177.17 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: INTERSTRAND NOE PATTERN REMARK 700 REMARK 700 THE SHEET STRUCTURE, S2, OF THIS MOLECULE IS BIFURCATED BY REMARK 700 A BULGE STRUCTURE OCCURRING AT ASP 77 - TYR 78 - GLY 79. REMARK 700 IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS REMARK 700 BELOW, TWO SHEETS ARE DEFINED. STRANDS 1 AND 2 OF SHEET REMARK 700 S2A AND S2B ARE IDENTICAL. REMARK 700 REMARK 700 ALTHOUGH TWO SHEETS ARE DEFINED IN THE SHEET RECORDS, REMARK 700 SHEET S1 AND S2 ASSOCIATE IN PARALLEL PAIRING GLY 50 - REMARK 700 TRP 51 WITH ASP 89 - ALA 90. THE SHEET STRUCTURE IN THE REMARK 700 MOLECULE COULD THEREFORE BE DESCRIBED AS A SIX-STRANDED REMARK 700 MIXED BETA-SHEET. REMARK 999 REMARK 999 SEQUENCE REMARK 999 1TSG SWS P98066 1 - 35 NOT IN ATOMS LIST REMARK 999 1TSG SWS P98066 134 - 277 NOT IN ATOMS LIST DBREF 1TSG A 1 98 UNP P98066 TSG6_HUMAN 36 133 SEQRES 1 A 98 GLY VAL TYR HIS ARG GLU ALA ARG SER GLY LYS TYR LYS SEQRES 2 A 98 LEU THR TYR ALA GLU ALA LYS ALA VAL CYS GLU PHE GLU SEQRES 3 A 98 GLY GLY HIS LEU ALA THR TYR LYS GLN LEU GLU ALA ALA SEQRES 4 A 98 ARG LYS ILE GLY PHE HIS VAL CYS ALA ALA GLY TRP MET SEQRES 5 A 98 ALA LYS GLY ARG VAL GLY TYR PRO ILE VAL LYS PRO GLY SEQRES 6 A 98 PRO ASN CYS GLY PHE GLY LYS THR GLY ILE ILE ASP TYR SEQRES 7 A 98 GLY ILE ARG LEU ASN ARG SER GLU ARG TRP ASP ALA TYR SEQRES 8 A 98 CYS TYR ASN PRO HIS ALA LYS HELIX 1 A1 TYR A 16 PHE A 25 1 10 HELIX 2 A2 LEU A 36 LYS A 41 1IRREGULAR 6 SHEET 1 S1 3 VAL A 2 GLU A 6 0 SHEET 2 S1 3 ASP A 89 TYR A 93 -1 O CYS A 92 N TYR A 3 SHEET 3 S1 3 HIS A 29 ALA A 31 -1 O HIS A 29 N TYR A 93 SHEET 1 S2A 3 ALA A 49 TRP A 51 0 SHEET 2 S2A 3 ARG A 56 PRO A 60 -1 O GLY A 58 N GLY A 50 SHEET 3 S2A 3 ILE A 75 ILE A 76 -1 O ILE A 76 N TYR A 59 SHEET 1 S2B 2 ALA A 49 TRP A 51 0 SHEET 2 S2B 2 ARG A 56 PRO A 60 -1 O GLY A 58 N GLY A 50 SSBOND 1 CYS A 23 CYS A 92 SSBOND 2 CYS A 47 CYS A 68 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000