data_1TUV # _entry.id 1TUV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1TUV RCSB RCSB022921 WWPDB D_1000022921 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1R6Y _pdbx_database_related.details 'Native, Uncomplexed protein' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1TUV _pdbx_database_status.recvd_initial_deposition_date 2004-06-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Adams, M.A.' 1 'Jia, Z.' 2 # _citation.id primary _citation.title ;Structural and Biochemical Evidence for an Enzymatic Quinone Redox Cycle in Escherichia coli: IDENTIFICATION OF A NOVEL QUINOL MONOOXYGENASE ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 8358 _citation.page_last 8363 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15613473 _citation.pdbx_database_id_DOI 10.1074/jbc.M412637200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Adams, M.A.' 1 primary 'Jia, Z.' 2 # _cell.entry_id 1TUV _cell.length_a 102.562 _cell.length_b 102.562 _cell.length_c 102.562 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TUV _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein ygiN' 12775.716 1 ? ? ? ? 2 non-polymer syn MENADIONE 172.180 1 ? ? ? ? 3 water nat water 18.015 181 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPH MKAYSEAVKGDVLEMNIRILQPGISGRVHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPH MKAYSEAVKGDVLEMNIRILQPGISGRVHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 THR n 1 4 VAL n 1 5 ILE n 1 6 ALA n 1 7 GLU n 1 8 ILE n 1 9 ARG n 1 10 THR n 1 11 ARG n 1 12 PRO n 1 13 GLY n 1 14 GLN n 1 15 HIS n 1 16 HIS n 1 17 ARG n 1 18 GLN n 1 19 ALA n 1 20 VAL n 1 21 LEU n 1 22 ASP n 1 23 GLN n 1 24 PHE n 1 25 ALA n 1 26 LYS n 1 27 ILE n 1 28 VAL n 1 29 PRO n 1 30 THR n 1 31 VAL n 1 32 LEU n 1 33 LYS n 1 34 GLU n 1 35 GLU n 1 36 GLY n 1 37 CYS n 1 38 HIS n 1 39 GLY n 1 40 TYR n 1 41 ALA n 1 42 PRO n 1 43 MET n 1 44 VAL n 1 45 ASP n 1 46 CYS n 1 47 ALA n 1 48 ALA n 1 49 GLY n 1 50 VAL n 1 51 SER n 1 52 PHE n 1 53 GLN n 1 54 SER n 1 55 MET n 1 56 ALA n 1 57 PRO n 1 58 ASP n 1 59 SER n 1 60 ILE n 1 61 VAL n 1 62 MET n 1 63 ILE n 1 64 GLU n 1 65 GLN n 1 66 TRP n 1 67 GLU n 1 68 SER n 1 69 ILE n 1 70 ALA n 1 71 HIS n 1 72 LEU n 1 73 GLU n 1 74 ALA n 1 75 HIS n 1 76 LEU n 1 77 GLN n 1 78 THR n 1 79 PRO n 1 80 HIS n 1 81 MET n 1 82 LYS n 1 83 ALA n 1 84 TYR n 1 85 SER n 1 86 GLU n 1 87 ALA n 1 88 VAL n 1 89 LYS n 1 90 GLY n 1 91 ASP n 1 92 VAL n 1 93 LEU n 1 94 GLU n 1 95 MET n 1 96 ASN n 1 97 ILE n 1 98 ARG n 1 99 ILE n 1 100 LEU n 1 101 GLN n 1 102 PRO n 1 103 GLY n 1 104 ILE n 1 105 SER n 1 106 GLY n 1 107 ARG n 1 108 VAL n 1 109 HIS n 1 110 HIS n 1 111 HIS n 1 112 HIS n 1 113 HIS n 1 114 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ygiN _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YGIN_ECOLI _struct_ref.pdbx_db_accession P40718 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPH MKAYSEAVKGDVLEMNIRILQPGI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1TUV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 104 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P40718 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 104 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 104 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1TUV SER A 105 ? UNP P40718 ? ? 'CLONING ARTIFACT' 105 1 1 1TUV GLY A 106 ? UNP P40718 ? ? 'CLONING ARTIFACT' 106 2 1 1TUV ARG A 107 ? UNP P40718 ? ? 'CLONING ARTIFACT' 107 3 1 1TUV VAL A 108 ? UNP P40718 ? ? 'CLONING ARTIFACT' 108 4 1 1TUV HIS A 109 ? UNP P40718 ? ? 'EXPRESSION TAG' 109 5 1 1TUV HIS A 110 ? UNP P40718 ? ? 'EXPRESSION TAG' 110 6 1 1TUV HIS A 111 ? UNP P40718 ? ? 'EXPRESSION TAG' 111 7 1 1TUV HIS A 112 ? UNP P40718 ? ? 'EXPRESSION TAG' 112 8 1 1TUV HIS A 113 ? UNP P40718 ? ? 'EXPRESSION TAG' 113 9 1 1TUV HIS A 114 ? UNP P40718 ? ? 'EXPRESSION TAG' 114 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 VK3 non-polymer . MENADIONE 'VITAMIN K3; 2-METHYL-1,4-NAPHTHALENEDIONE' 'C11 H8 O2' 172.180 # _exptl.entry_id 1TUV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.24 _exptl_crystal.density_percent_sol 61.7 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details 'sodium citrate, ammonium sulfate, sodium/potassium tartrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2004-04-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) channel cut monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9788 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X6A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X6A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9788 # _reflns.entry_id 1TUV _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.d_resolution_high 1.69 _reflns.d_resolution_low 50 _reflns.number_all 19783 _reflns.number_obs 19783 _reflns.percent_possible_obs 100.00 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value 0.07 _reflns.pdbx_netI_over_sigmaI 50 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.69 _reflns_shell.d_res_low 1.77 _reflns_shell.percent_possible_all 99 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1TUV _refine.ls_number_reflns_obs 19783 _refine.ls_number_reflns_all 19783 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.65 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.20949 _refine.ls_R_factor_all 0.20949 _refine.ls_R_factor_R_work 0.20756 _refine.ls_R_factor_R_free 0.24904 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1056 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.928 _refine.B_iso_mean 22.765 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'direct input of native model' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.090 _refine.pdbx_overall_ESU_R_Free 0.097 _refine.overall_SU_ML 0.062 _refine.overall_SU_B 1.913 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 797 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 181 _refine_hist.number_atoms_total 991 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 25.65 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.024 0.021 ? 829 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 756 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.000 1.962 ? 1124 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.020 3.000 ? 1761 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.102 5.000 ? 102 'X-RAY DIFFRACTION' ? r_chiral_restr 0.130 0.200 ? 125 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.020 ? 913 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.016 0.020 ? 152 'X-RAY DIFFRACTION' ? r_nbd_refined 0.243 0.200 ? 194 'X-RAY DIFFRACTION' ? r_nbd_other 0.261 0.200 ? 909 'X-RAY DIFFRACTION' ? r_nbtor_other 0.092 0.200 ? 506 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.235 0.200 ? 137 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.284 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.400 0.200 ? 48 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.223 0.200 ? 20 'X-RAY DIFFRACTION' ? r_mcbond_it 1.337 1.500 ? 515 'X-RAY DIFFRACTION' ? r_mcangle_it 2.379 2.000 ? 832 'X-RAY DIFFRACTION' ? r_scbond_it 4.137 3.000 ? 314 'X-RAY DIFFRACTION' ? r_scangle_it 6.428 4.500 ? 292 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.701 _refine_ls_shell.d_res_low 1.745 _refine_ls_shell.number_reflns_R_work 1411 _refine_ls_shell.R_factor_R_work 0.315 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.362 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1TUV _struct.title 'Crystal structure of YgiN in complex with menadione' _struct.pdbx_descriptor 'Protein ygiN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1TUV _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'menadione oxidase, monooxygenase, co-crystal with natural product, ferredoxin fold, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 15 ? GLU A 34 ? HIS A 15 GLU A 34 1 ? 20 HELX_P HELX_P2 2 SER A 68 ? GLN A 77 ? SER A 68 GLN A 77 1 ? 10 HELX_P HELX_P3 3 THR A 78 ? LYS A 89 ? THR A 78 LYS A 89 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 37 ? MET A 43 ? CYS A 37 MET A 43 A 2 SER A 59 ? TRP A 66 ? SER A 59 TRP A 66 A 3 LEU A 2 ? THR A 10 ? LEU A 2 THR A 10 A 4 VAL A 92 ? LEU A 100 ? VAL A 92 LEU A 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 38 ? N HIS A 38 O GLN A 65 ? O GLN A 65 A 2 3 O MET A 62 ? O MET A 62 N ALA A 6 ? N ALA A 6 A 3 4 N THR A 3 ? N THR A 3 O LEU A 100 ? O LEU A 100 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE VK3 A 4558' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 TYR A 40 ? TYR A 40 . ? 1_555 ? 2 AC1 9 SER A 51 ? SER A 51 . ? 7_454 ? 3 AC1 9 GLU A 64 ? GLU A 64 . ? 1_555 ? 4 AC1 9 HIS A 75 ? HIS A 75 . ? 1_555 ? 5 AC1 9 LEU A 76 ? LEU A 76 . ? 1_555 ? 6 AC1 9 TYR A 84 ? TYR A 84 . ? 1_555 ? 7 AC1 9 MET A 95 ? MET A 95 . ? 1_555 ? 8 AC1 9 ILE A 97 ? ILE A 97 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 4651 . ? 1_555 ? # _database_PDB_matrix.entry_id 1TUV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1TUV _atom_sites.fract_transf_matrix[1][1] 0.009750 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009750 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009750 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 MET 43 43 43 MET MET A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 CYS 46 46 46 CYS CYS A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 MET 55 55 55 MET MET A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 MET 62 62 62 MET MET A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 TRP 66 66 66 TRP TRP A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 HIS 80 80 80 HIS HIS A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 MET 95 95 95 MET MET A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ILE 104 104 ? ? ? A . n A 1 105 SER 105 105 ? ? ? A . n A 1 106 GLY 106 106 ? ? ? A . n A 1 107 ARG 107 107 ? ? ? A . n A 1 108 VAL 108 108 ? ? ? A . n A 1 109 HIS 109 109 ? ? ? A . n A 1 110 HIS 110 110 ? ? ? A . n A 1 111 HIS 111 111 ? ? ? A . n A 1 112 HIS 112 112 ? ? ? A . n A 1 113 HIS 113 113 ? ? ? A . n A 1 114 HIS 114 114 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VK3 1 4558 4558 VK3 VK3 A . C 3 HOH 1 4559 1 HOH HOH A . C 3 HOH 2 4560 2 HOH HOH A . C 3 HOH 3 4561 3 HOH HOH A . C 3 HOH 4 4562 4 HOH HOH A . C 3 HOH 5 4563 5 HOH HOH A . C 3 HOH 6 4564 6 HOH HOH A . C 3 HOH 7 4565 7 HOH HOH A . C 3 HOH 8 4566 8 HOH HOH A . C 3 HOH 9 4567 9 HOH HOH A . C 3 HOH 10 4568 10 HOH HOH A . C 3 HOH 11 4569 12 HOH HOH A . C 3 HOH 12 4570 13 HOH HOH A . C 3 HOH 13 4571 14 HOH HOH A . C 3 HOH 14 4572 15 HOH HOH A . C 3 HOH 15 4573 16 HOH HOH A . C 3 HOH 16 4574 17 HOH HOH A . C 3 HOH 17 4575 18 HOH HOH A . C 3 HOH 18 4576 19 HOH HOH A . C 3 HOH 19 4577 20 HOH HOH A . C 3 HOH 20 4578 21 HOH HOH A . C 3 HOH 21 4579 22 HOH HOH A . C 3 HOH 22 4580 23 HOH HOH A . C 3 HOH 23 4581 24 HOH HOH A . C 3 HOH 24 4582 25 HOH HOH A . C 3 HOH 25 4583 26 HOH HOH A . C 3 HOH 26 4584 27 HOH HOH A . C 3 HOH 27 4585 28 HOH HOH A . C 3 HOH 28 4586 29 HOH HOH A . C 3 HOH 29 4587 30 HOH HOH A . C 3 HOH 30 4588 31 HOH HOH A . C 3 HOH 31 4589 32 HOH HOH A . C 3 HOH 32 4590 33 HOH HOH A . C 3 HOH 33 4591 34 HOH HOH A . C 3 HOH 34 4592 35 HOH HOH A . C 3 HOH 35 4593 36 HOH HOH A . C 3 HOH 36 4594 37 HOH HOH A . C 3 HOH 37 4595 38 HOH HOH A . C 3 HOH 38 4596 39 HOH HOH A . C 3 HOH 39 4597 40 HOH HOH A . C 3 HOH 40 4598 41 HOH HOH A . C 3 HOH 41 4599 42 HOH HOH A . C 3 HOH 42 4600 43 HOH HOH A . C 3 HOH 43 4601 44 HOH HOH A . C 3 HOH 44 4602 45 HOH HOH A . C 3 HOH 45 4603 46 HOH HOH A . C 3 HOH 46 4604 47 HOH HOH A . C 3 HOH 47 4605 48 HOH HOH A . C 3 HOH 48 4606 49 HOH HOH A . C 3 HOH 49 4607 50 HOH HOH A . C 3 HOH 50 4608 51 HOH HOH A . C 3 HOH 51 4609 52 HOH HOH A . C 3 HOH 52 4610 53 HOH HOH A . C 3 HOH 53 4611 54 HOH HOH A . C 3 HOH 54 4612 55 HOH HOH A . C 3 HOH 55 4613 56 HOH HOH A . C 3 HOH 56 4614 57 HOH HOH A . C 3 HOH 57 4615 58 HOH HOH A . C 3 HOH 58 4616 59 HOH HOH A . C 3 HOH 59 4617 60 HOH HOH A . C 3 HOH 60 4618 61 HOH HOH A . C 3 HOH 61 4619 62 HOH HOH A . C 3 HOH 62 4620 63 HOH HOH A . C 3 HOH 63 4621 64 HOH HOH A . C 3 HOH 64 4622 65 HOH HOH A . C 3 HOH 65 4623 66 HOH HOH A . C 3 HOH 66 4624 67 HOH HOH A . C 3 HOH 67 4625 68 HOH HOH A . C 3 HOH 68 4626 69 HOH HOH A . C 3 HOH 69 4627 70 HOH HOH A . C 3 HOH 70 4628 71 HOH HOH A . C 3 HOH 71 4629 72 HOH HOH A . C 3 HOH 72 4630 73 HOH HOH A . C 3 HOH 73 4631 74 HOH HOH A . C 3 HOH 74 4632 75 HOH HOH A . C 3 HOH 75 4633 76 HOH HOH A . C 3 HOH 76 4634 77 HOH HOH A . C 3 HOH 77 4635 78 HOH HOH A . C 3 HOH 78 4636 79 HOH HOH A . C 3 HOH 79 4637 80 HOH HOH A . C 3 HOH 80 4638 81 HOH HOH A . C 3 HOH 81 4639 82 HOH HOH A . C 3 HOH 82 4640 83 HOH HOH A . C 3 HOH 83 4641 84 HOH HOH A . C 3 HOH 84 4642 85 HOH HOH A . C 3 HOH 85 4643 86 HOH HOH A . C 3 HOH 86 4644 87 HOH HOH A . C 3 HOH 87 4645 88 HOH HOH A . C 3 HOH 88 4646 89 HOH HOH A . C 3 HOH 89 4647 90 HOH HOH A . C 3 HOH 90 4648 91 HOH HOH A . C 3 HOH 91 4649 92 HOH HOH A . C 3 HOH 92 4650 93 HOH HOH A . C 3 HOH 93 4651 94 HOH HOH A . C 3 HOH 94 4652 95 HOH HOH A . C 3 HOH 95 4653 96 HOH HOH A . C 3 HOH 96 4654 97 HOH HOH A . C 3 HOH 97 4655 98 HOH HOH A . C 3 HOH 98 4656 99 HOH HOH A . C 3 HOH 99 4657 100 HOH HOH A . C 3 HOH 100 4658 101 HOH HOH A . C 3 HOH 101 4659 103 HOH HOH A . C 3 HOH 102 4660 104 HOH HOH A . C 3 HOH 103 4661 105 HOH HOH A . C 3 HOH 104 4662 106 HOH HOH A . C 3 HOH 105 4663 107 HOH HOH A . C 3 HOH 106 4664 108 HOH HOH A . C 3 HOH 107 4665 109 HOH HOH A . C 3 HOH 108 4666 110 HOH HOH A . C 3 HOH 109 4667 111 HOH HOH A . C 3 HOH 110 4668 112 HOH HOH A . C 3 HOH 111 4669 113 HOH HOH A . C 3 HOH 112 4670 114 HOH HOH A . C 3 HOH 113 4671 115 HOH HOH A . C 3 HOH 114 4672 116 HOH HOH A . C 3 HOH 115 4673 117 HOH HOH A . C 3 HOH 116 4674 118 HOH HOH A . C 3 HOH 117 4675 119 HOH HOH A . C 3 HOH 118 4676 120 HOH HOH A . C 3 HOH 119 4677 121 HOH HOH A . C 3 HOH 120 4678 122 HOH HOH A . C 3 HOH 121 4679 123 HOH HOH A . C 3 HOH 122 4680 124 HOH HOH A . C 3 HOH 123 4681 125 HOH HOH A . C 3 HOH 124 4682 126 HOH HOH A . C 3 HOH 125 4683 127 HOH HOH A . C 3 HOH 126 4684 128 HOH HOH A . C 3 HOH 127 4685 129 HOH HOH A . C 3 HOH 128 4686 130 HOH HOH A . C 3 HOH 129 4687 131 HOH HOH A . C 3 HOH 130 4688 132 HOH HOH A . C 3 HOH 131 4689 133 HOH HOH A . C 3 HOH 132 4690 134 HOH HOH A . C 3 HOH 133 4691 135 HOH HOH A . C 3 HOH 134 4692 136 HOH HOH A . C 3 HOH 135 4693 137 HOH HOH A . C 3 HOH 136 4694 138 HOH HOH A . C 3 HOH 137 4695 139 HOH HOH A . C 3 HOH 138 4696 140 HOH HOH A . C 3 HOH 139 4697 141 HOH HOH A . C 3 HOH 140 4698 142 HOH HOH A . C 3 HOH 141 4699 143 HOH HOH A . C 3 HOH 142 4700 144 HOH HOH A . C 3 HOH 143 4701 145 HOH HOH A . C 3 HOH 144 4702 146 HOH HOH A . C 3 HOH 145 4703 148 HOH HOH A . C 3 HOH 146 4704 149 HOH HOH A . C 3 HOH 147 4705 150 HOH HOH A . C 3 HOH 148 4706 151 HOH HOH A . C 3 HOH 149 4707 152 HOH HOH A . C 3 HOH 150 4708 153 HOH HOH A . C 3 HOH 151 4709 154 HOH HOH A . C 3 HOH 152 4710 155 HOH HOH A . C 3 HOH 153 4711 157 HOH HOH A . C 3 HOH 154 4712 158 HOH HOH A . C 3 HOH 155 4713 159 HOH HOH A . C 3 HOH 156 4714 160 HOH HOH A . C 3 HOH 157 4715 161 HOH HOH A . C 3 HOH 158 4716 162 HOH HOH A . C 3 HOH 159 4717 163 HOH HOH A . C 3 HOH 160 4718 164 HOH HOH A . C 3 HOH 161 4719 165 HOH HOH A . C 3 HOH 162 4720 166 HOH HOH A . C 3 HOH 163 4721 167 HOH HOH A . C 3 HOH 164 4722 168 HOH HOH A . C 3 HOH 165 4723 170 HOH HOH A . C 3 HOH 166 4724 171 HOH HOH A . C 3 HOH 167 4725 172 HOH HOH A . C 3 HOH 168 4726 173 HOH HOH A . C 3 HOH 169 4727 174 HOH HOH A . C 3 HOH 170 4728 175 HOH HOH A . C 3 HOH 171 4729 176 HOH HOH A . C 3 HOH 172 4730 177 HOH HOH A . C 3 HOH 173 4731 178 HOH HOH A . C 3 HOH 174 4732 179 HOH HOH A . C 3 HOH 175 4733 180 HOH HOH A . C 3 HOH 176 4734 181 HOH HOH A . C 3 HOH 177 4735 182 HOH HOH A . C 3 HOH 178 4736 183 HOH HOH A . C 3 HOH 179 4737 184 HOH HOH A . C 3 HOH 180 4738 185 HOH HOH A . C 3 HOH 181 4739 186 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PQS monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C 2 1,3 A,B,C 3 1 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3800 ? 2 MORE -32 ? 2 'SSA (A^2)' 10270 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_454 -z-1/2,-x,y-1/2 0.0000000000 0.0000000000 -1.0000000000 -51.2810000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -51.2810000000 3 'crystal symmetry operation' 22_554 z+1/4,-y+1/4,x-1/4 0.0000000000 0.0000000000 1.0000000000 25.6405000000 0.0000000000 -1.0000000000 0.0000000000 25.6405000000 1.0000000000 0.0000000000 0.0000000000 -25.6405000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 4610 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-01-11 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 4682 ? ? O A HOH 4729 ? ? 1.89 2 1 O A GLN 14 ? ? O A HOH 4718 ? ? 1.92 3 1 N A HIS 15 ? ? O A HOH 4725 ? ? 2.11 4 1 O A HOH 4580 ? ? O A HOH 4716 ? ? 2.13 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 4699 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 4719 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 22_554 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 17 ? ? CZ A ARG 17 ? ? NH1 A ARG 17 ? ? 125.33 120.30 5.03 0.50 N 2 1 NE A ARG 17 ? ? CZ A ARG 17 ? ? NH2 A ARG 17 ? ? 114.99 120.30 -5.31 0.50 N 3 1 CB A ASP 45 ? ? CG A ASP 45 ? ? OD2 A ASP 45 ? ? 124.83 118.30 6.53 0.90 N 4 1 CG A MET 81 ? ? SD A MET 81 ? ? CE A MET 81 ? ? 110.28 100.20 10.08 1.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 15 ? ? 32.79 35.86 2 1 TYR A 40 ? ? -161.88 96.89 3 1 ASP A 58 ? ? -98.36 43.57 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 104 ? A ILE 104 2 1 Y 1 A SER 105 ? A SER 105 3 1 Y 1 A GLY 106 ? A GLY 106 4 1 Y 1 A ARG 107 ? A ARG 107 5 1 Y 1 A VAL 108 ? A VAL 108 6 1 Y 1 A HIS 109 ? A HIS 109 7 1 Y 1 A HIS 110 ? A HIS 110 8 1 Y 1 A HIS 111 ? A HIS 111 9 1 Y 1 A HIS 112 ? A HIS 112 10 1 Y 1 A HIS 113 ? A HIS 113 11 1 Y 1 A HIS 114 ? A HIS 114 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 MENADIONE VK3 3 water HOH #