HEADER OXIDOREDUCTASE 29-JUN-04 1TVE TITLE HOMOSERINE DEHYDROGENASE IN COMPLEX WITH 4-(4-HYDROXY-3- TITLE 2 ISOPROPYLPHENYLTHIO)-2-ISOPROPYLPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOSERINE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HDH; COMPND 5 EC: 1.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: HOM6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ANTIFUNGAL; SMALL MOLECULE SCREENING; AMINO ACID BIOSYNTHESIS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.EJIM,I.A.MIRZA,C.CAPONE,I.NAZI,S.JENKINS,G.L.CHEE,A.M.BERGHUIS, AUTHOR 2 G.D.WRIGHT REVDAT 3 23-AUG-23 1TVE 1 REMARK REVDAT 2 24-FEB-09 1TVE 1 VERSN REVDAT 1 13-JUL-04 1TVE 0 JRNL AUTH L.EJIM,I.A.MIRZA,C.CAPONE,I.NAZI,S.JENKINS,G.L.CHEE, JRNL AUTH 2 A.M.BERGHUIS,G.D.WRIGHT JRNL TITL NEW PHENOLIC INHIBITORS OF YEAST HOMOSERINE DEHYDROGENASE JRNL REF BIOORG.MED.CHEM. V. 12 3825 2004 JRNL REFN ISSN 0968-0896 JRNL PMID 15210149 JRNL DOI 10.1016/J.BMC.2004.05.009 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 169416.370 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 14010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.289 REMARK 3 FREE R VALUE : 0.363 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1416 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1982 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 211 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5420 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.76000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 15.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 18.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM SIGMAA (A) : 0.49 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.66 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.74 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.800 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.950 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.320 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 108.6 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : H086.003.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : H086.003.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000022938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0722 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14617 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1EBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CHES, PEG 600, PH 9.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.18950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 2 REMARK 475 THR A 3 REMARK 475 LYS A 4 REMARK 475 SER A 132 REMARK 475 ASN A 133 REMARK 475 LYS A 315 REMARK 475 SER B 2 REMARK 475 VAL B 5 REMARK 475 THR B 30 REMARK 475 GLY B 138 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 5 N CB CG1 CG2 REMARK 480 ASN A 7 CB CG OD1 ND2 REMARK 480 LYS A 28 CB CG CD CE NZ REMARK 480 ILE A 31 CD1 REMARK 480 ASN A 34 CB CG OD1 ND2 REMARK 480 LEU A 35 CB CG CD1 CD2 REMARK 480 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 480 SER A 44 OG REMARK 480 ILE A 46 CB CG1 CG2 CD1 REMARK 480 SER A 47 CB OG REMARK 480 LYS A 48 N CA CB CG CD CE NZ REMARK 480 PHE A 50 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 SER A 51 OG REMARK 480 ASN A 54 C O REMARK 480 VAL A 55 N CA CB CG1 CG2 REMARK 480 LYS A 60 CG CD CE NZ REMARK 480 LYS A 69 CD CE NZ REMARK 480 ASP A 74 CG OD1 OD2 REMARK 480 ASP A 75 CB CG OD1 OD2 REMARK 480 THR A 82 N CA CB OG1 CG2 REMARK 480 SER A 83 CB OG REMARK 480 LYS A 85 CG CD CE NZ REMARK 480 LEU A 89 CB CG CD1 CD2 REMARK 480 PHE A 101 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS A 104 CB CG CD CE NZ REMARK 480 GLU A 107 C O CB CG CD OE1 OE2 REMARK 480 ASN A 108 N CA CB CG OD1 ND2 REMARK 480 LYS A 118 CE NZ REMARK 480 SER A 122 OG REMARK 480 ALA A 129 C O REMARK 480 LEU A 130 N REMARK 480 PHE A 131 C O REMARK 480 LYS A 134 CG CD CE NZ REMARK 480 THR A 136 CB OG1 CG2 REMARK 480 GLY A 149 CA C O REMARK 480 ILE A 159 CG1 CD1 REMARK 480 LYS A 168 CG CD CE NZ REMARK 480 GLN A 188 CB CG CD OE1 NE2 REMARK 480 ASP A 191 CG OD1 OD2 REMARK 480 LYS A 199 CG CD CE NZ REMARK 480 LYS A 202 CG CD CE NZ REMARK 480 LYS A 203 CG CD CE NZ REMARK 480 LEU A 204 CD1 CD2 REMARK 480 LEU A 218 CB CG CD1 CD2 REMARK 480 GLU A 234 CG CD OE1 OE2 REMARK 480 GLU A 236 CB CG CD OE1 OE2 REMARK 480 LYS A 249 CB CG CD CE NZ REMARK 480 VAL A 254 CA C O CB CG1 CG2 REMARK 480 LYS A 255 N CA CB CG CD CE NZ REMARK 480 SER A 256 OG REMARK 480 ASP A 258 CB CG OD1 OD2 REMARK 480 LEU A 261 CB CG CD1 CD2 REMARK 480 GLU A 262 CB CG CD OE1 OE2 REMARK 480 LYS A 263 CG CD CE NZ REMARK 480 LEU A 264 CG CD1 CD2 REMARK 480 SER A 265 OG REMARK 480 GLN A 273 CG CD OE1 NE2 REMARK 480 LYS A 276 CG CD CE NZ REMARK 480 LYS A 296 CE NZ REMARK 480 SER A 308 CB OG REMARK 480 SER A 313 CB OG REMARK 480 LEU A 314 C O CG CD1 CD2 REMARK 480 SER A 317 OG REMARK 480 VAL A 348 CG1 CG2 REMARK 480 LEU A 349 CD1 CD2 REMARK 480 THR B 3 N REMARK 480 VAL B 6 N REMARK 480 ASN B 7 CB CG OD1 ND2 REMARK 480 ASP B 22 CG OD1 OD2 REMARK 480 SER B 29 C O OG REMARK 480 ILE B 31 CB CG1 CG2 CD1 REMARK 480 ASN B 34 CB CG OD1 ND2 REMARK 480 LEU B 35 CG CD1 CD2 REMARK 480 ARG B 43 CB CG CD NE CZ NH1 NH2 REMARK 480 ILE B 46 CA CB CG1 CG2 CD1 REMARK 480 LYS B 48 CA C O CB CG CD CE REMARK 480 LYS B 48 NZ REMARK 480 PHE B 50 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 SER B 51 CB OG REMARK 480 VAL B 55 C O REMARK 480 SER B 57 CB OG REMARK 480 ASP B 58 CG OD1 OD2 REMARK 480 LYS B 60 CG CD CE NZ REMARK 480 LEU B 63 CG CD1 CD2 REMARK 480 LYS B 69 CG CD CE NZ REMARK 480 THR B 70 CB OG1 CG2 REMARK 480 ASP B 74 CB CG OD1 OD2 REMARK 480 ILE B 77 CB CG1 CG2 CD1 REMARK 480 LYS B 81 CB CG CD CE NZ REMARK 480 SER B 83 CB OG REMARK 480 LYS B 85 CG CD CE NZ REMARK 480 LEU B 89 CB CG CD1 CD2 REMARK 480 SER B 95 CB OG REMARK 480 LYS B 104 CB CG CD CE NZ REMARK 480 VAL B 106 C O REMARK 480 GLU B 107 N CA CB CG CD OE1 OE2 REMARK 480 GLY B 109 N CA REMARK 480 SER B 132 CB OG REMARK 480 ASN B 133 CB CG OD1 ND2 REMARK 480 LYS B 134 CB CG CD CE NZ REMARK 480 ASN B 137 C O REMARK 480 PHE B 139 N REMARK 480 GLU B 167 CG CD OE1 OE2 REMARK 480 LYS B 168 CD CE NZ REMARK 480 ASN B 190 CG OD1 ND2 REMARK 480 LYS B 193 CB CG CD CE NZ REMARK 480 GLU B 208 CG CD OE1 OE2 REMARK 480 LEU B 218 CB CG CD1 CD2 REMARK 480 GLU B 234 CD OE1 OE2 REMARK 480 GLU B 236 CB CG CD OE1 OE2 REMARK 480 SER B 240 OG REMARK 480 LYS B 249 CD CE NZ REMARK 480 SER B 256 CB OG REMARK 480 GLU B 262 CD OE1 OE2 REMARK 480 LYS B 269 CG CD CE NZ REMARK 480 LYS B 276 CB CG CD CE NZ REMARK 480 GLU B 281 CA C O CB CG CD OE1 REMARK 480 GLU B 281 OE2 REMARK 480 LYS B 290 CE NZ REMARK 480 LYS B 296 CD CE NZ REMARK 480 LYS B 304 CB CG CD CE NZ REMARK 480 SER B 308 OG REMARK 480 SER B 313 OG REMARK 480 LYS B 315 CB CG CD CE NZ REMARK 480 ASN B 330 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 134 OD1 ASN A 137 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 43.23 -153.36 REMARK 500 VAL A 15 -73.52 -127.85 REMARK 500 ALA A 26 0.53 -60.39 REMARK 500 ALA A 41 -112.94 33.08 REMARK 500 PRO A 52 138.83 -31.51 REMARK 500 ASN A 54 59.49 -116.36 REMARK 500 SER A 57 38.33 -78.57 REMARK 500 LYS A 60 -72.52 -48.23 REMARK 500 ALA A 64 -70.57 -56.55 REMARK 500 ALA A 65 -72.83 -45.43 REMARK 500 SER A 66 107.17 -2.36 REMARK 500 THR A 67 29.71 -74.45 REMARK 500 PRO A 84 -104.85 -46.50 REMARK 500 PRO A 86 140.43 -31.08 REMARK 500 ASP A 91 90.21 -51.26 REMARK 500 ASN A 108 44.99 -108.34 REMARK 500 ALA A 113 78.28 -150.12 REMARK 500 LYS A 118 -69.98 2.20 REMARK 500 SER A 122 -114.18 -73.91 REMARK 500 ALA A 129 -50.44 -175.89 REMARK 500 VAL A 146 -80.86 -125.18 REMARK 500 ALA A 148 -125.03 79.32 REMARK 500 PRO A 151 45.56 -95.41 REMARK 500 GLU A 167 -48.93 -133.70 REMARK 500 ALA A 189 110.04 69.81 REMARK 500 PRO A 248 119.88 -34.97 REMARK 500 LEU A 251 7.98 -54.79 REMARK 500 SER A 253 0.14 153.51 REMARK 500 VAL A 254 76.56 -49.07 REMARK 500 LYS A 255 -119.37 51.81 REMARK 500 SER A 265 -17.56 -48.64 REMARK 500 ASN A 282 46.34 74.18 REMARK 500 ALA A 294 -75.36 -34.80 REMARK 500 SER A 299 143.35 -179.25 REMARK 500 ALA A 312 22.00 -66.45 REMARK 500 SER A 313 51.30 -151.38 REMARK 500 THR A 325 -160.38 -117.63 REMARK 500 TYR A 328 56.16 -92.72 REMARK 500 ALA B 13 43.67 -153.74 REMARK 500 VAL B 15 -73.84 -128.09 REMARK 500 ALA B 26 0.15 -60.38 REMARK 500 ALA B 41 -112.56 32.72 REMARK 500 PHE B 50 1.78 51.38 REMARK 500 PRO B 52 -177.77 -49.61 REMARK 500 LEU B 53 77.58 -106.50 REMARK 500 ASN B 54 96.66 -50.91 REMARK 500 VAL B 55 -63.70 -142.57 REMARK 500 ASP B 58 30.60 36.40 REMARK 500 THR B 67 -33.45 -130.51 REMARK 500 PRO B 72 161.36 -41.68 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 178 A 1360 REMARK 615 178 B 2360 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 178 A 1360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 178 B 2360 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q7G RELATED DB: PDB REMARK 900 RELATED ID: 1EBU RELATED DB: PDB REMARK 900 RELATED ID: 1EBF RELATED DB: PDB DBREF 1TVE A 2 359 UNP P31116 DHOM_YEAST 2 359 DBREF 1TVE B 2 359 UNP P31116 DHOM_YEAST 2 359 SEQRES 1 A 358 SER THR LYS VAL VAL ASN VAL ALA VAL ILE GLY ALA GLY SEQRES 2 A 358 VAL VAL GLY SER ALA PHE LEU ASP GLN LEU LEU ALA MET SEQRES 3 A 358 LYS SER THR ILE THR TYR ASN LEU VAL LEU LEU ALA GLU SEQRES 4 A 358 ALA GLU ARG SER LEU ILE SER LYS ASP PHE SER PRO LEU SEQRES 5 A 358 ASN VAL GLY SER ASP TRP LYS ALA ALA LEU ALA ALA SER SEQRES 6 A 358 THR THR LYS THR LEU PRO LEU ASP ASP LEU ILE ALA HIS SEQRES 7 A 358 LEU LYS THR SER PRO LYS PRO VAL ILE LEU VAL ASP ASN SEQRES 8 A 358 THR SER SER ALA TYR ILE ALA GLY PHE TYR THR LYS PHE SEQRES 9 A 358 VAL GLU ASN GLY ILE SER ILE ALA THR PRO ASN LYS LYS SEQRES 10 A 358 ALA PHE SER SER ASP LEU ALA THR TRP LYS ALA LEU PHE SEQRES 11 A 358 SER ASN LYS PRO THR ASN GLY PHE VAL TYR HIS GLU ALA SEQRES 12 A 358 THR VAL GLY ALA GLY LEU PRO ILE ILE SER PHE LEU ARG SEQRES 13 A 358 GLU ILE ILE GLN THR GLY ASP GLU VAL GLU LYS ILE GLU SEQRES 14 A 358 GLY ILE PHE SER GLY THR LEU SER TYR ILE PHE ASN GLU SEQRES 15 A 358 PHE SER THR SER GLN ALA ASN ASP VAL LYS PHE SER ASP SEQRES 16 A 358 VAL VAL LYS VAL ALA LYS LYS LEU GLY TYR THR GLU PRO SEQRES 17 A 358 ASP PRO ARG ASP ASP LEU ASN GLY LEU ASP VAL ALA ARG SEQRES 18 A 358 LYS VAL THR ILE VAL GLY ARG ILE SER GLY VAL GLU VAL SEQRES 19 A 358 GLU SER PRO THR SER PHE PRO VAL GLN SER LEU ILE PRO SEQRES 20 A 358 LYS PRO LEU GLU SER VAL LYS SER ALA ASP GLU PHE LEU SEQRES 21 A 358 GLU LYS LEU SER ASP TYR ASP LYS ASP LEU THR GLN LEU SEQRES 22 A 358 LYS LYS GLU ALA ALA THR GLU ASN LYS VAL LEU ARG PHE SEQRES 23 A 358 ILE GLY LYS VAL ASP VAL ALA THR LYS SER VAL SER VAL SEQRES 24 A 358 GLY ILE GLU LYS TYR ASP TYR SER HIS PRO PHE ALA SER SEQRES 25 A 358 LEU LYS GLY SER ASP ASN VAL ILE SER ILE LYS THR LYS SEQRES 26 A 358 ARG TYR THR ASN PRO VAL VAL ILE GLN GLY ALA GLY ALA SEQRES 27 A 358 GLY ALA ALA VAL THR ALA ALA GLY VAL LEU GLY ASP VAL SEQRES 28 A 358 ILE LYS ILE ALA GLN ARG LEU SEQRES 1 B 358 SER THR LYS VAL VAL ASN VAL ALA VAL ILE GLY ALA GLY SEQRES 2 B 358 VAL VAL GLY SER ALA PHE LEU ASP GLN LEU LEU ALA MET SEQRES 3 B 358 LYS SER THR ILE THR TYR ASN LEU VAL LEU LEU ALA GLU SEQRES 4 B 358 ALA GLU ARG SER LEU ILE SER LYS ASP PHE SER PRO LEU SEQRES 5 B 358 ASN VAL GLY SER ASP TRP LYS ALA ALA LEU ALA ALA SER SEQRES 6 B 358 THR THR LYS THR LEU PRO LEU ASP ASP LEU ILE ALA HIS SEQRES 7 B 358 LEU LYS THR SER PRO LYS PRO VAL ILE LEU VAL ASP ASN SEQRES 8 B 358 THR SER SER ALA TYR ILE ALA GLY PHE TYR THR LYS PHE SEQRES 9 B 358 VAL GLU ASN GLY ILE SER ILE ALA THR PRO ASN LYS LYS SEQRES 10 B 358 ALA PHE SER SER ASP LEU ALA THR TRP LYS ALA LEU PHE SEQRES 11 B 358 SER ASN LYS PRO THR ASN GLY PHE VAL TYR HIS GLU ALA SEQRES 12 B 358 THR VAL GLY ALA GLY LEU PRO ILE ILE SER PHE LEU ARG SEQRES 13 B 358 GLU ILE ILE GLN THR GLY ASP GLU VAL GLU LYS ILE GLU SEQRES 14 B 358 GLY ILE PHE SER GLY THR LEU SER TYR ILE PHE ASN GLU SEQRES 15 B 358 PHE SER THR SER GLN ALA ASN ASP VAL LYS PHE SER ASP SEQRES 16 B 358 VAL VAL LYS VAL ALA LYS LYS LEU GLY TYR THR GLU PRO SEQRES 17 B 358 ASP PRO ARG ASP ASP LEU ASN GLY LEU ASP VAL ALA ARG SEQRES 18 B 358 LYS VAL THR ILE VAL GLY ARG ILE SER GLY VAL GLU VAL SEQRES 19 B 358 GLU SER PRO THR SER PHE PRO VAL GLN SER LEU ILE PRO SEQRES 20 B 358 LYS PRO LEU GLU SER VAL LYS SER ALA ASP GLU PHE LEU SEQRES 21 B 358 GLU LYS LEU SER ASP TYR ASP LYS ASP LEU THR GLN LEU SEQRES 22 B 358 LYS LYS GLU ALA ALA THR GLU ASN LYS VAL LEU ARG PHE SEQRES 23 B 358 ILE GLY LYS VAL ASP VAL ALA THR LYS SER VAL SER VAL SEQRES 24 B 358 GLY ILE GLU LYS TYR ASP TYR SER HIS PRO PHE ALA SER SEQRES 25 B 358 LEU LYS GLY SER ASP ASN VAL ILE SER ILE LYS THR LYS SEQRES 26 B 358 ARG TYR THR ASN PRO VAL VAL ILE GLN GLY ALA GLY ALA SEQRES 27 B 358 GLY ALA ALA VAL THR ALA ALA GLY VAL LEU GLY ASP VAL SEQRES 28 B 358 ILE LYS ILE ALA GLN ARG LEU HET 178 A1360 21 HET 178 B2360 21 HETNAM 178 4-(4-HYDROXY-3-ISOPROPYLPHENYLTHIO)-2-ISOPROPYLPHENOL FORMUL 3 178 2(C18 H22 O2 S) HELIX 1 1 VAL A 15 MET A 27 1 13 HELIX 2 2 ASP A 58 SER A 66 1 9 HELIX 3 3 PRO A 72 THR A 82 1 11 HELIX 4 4 SER A 95 GLY A 100 1 6 HELIX 5 5 PHE A 101 ASN A 108 1 8 HELIX 6 6 LYS A 117 SER A 122 1 6 HELIX 7 7 HIS A 142 VAL A 146 5 5 HELIX 8 8 PRO A 151 THR A 162 1 12 HELIX 9 9 SER A 174 SER A 185 1 12 HELIX 10 10 LYS A 193 LEU A 204 1 12 HELIX 11 11 PRO A 211 ASN A 216 1 6 HELIX 12 12 GLY A 217 GLY A 232 1 16 HELIX 13 13 ALA A 257 SER A 265 1 9 HELIX 14 14 ASP A 268 ASN A 282 1 15 HELIX 15 15 PRO A 310 LEU A 314 5 5 HELIX 16 16 GLY A 340 GLN A 357 1 18 HELIX 17 17 VAL B 15 MET B 27 1 13 HELIX 18 18 ASP B 58 ALA B 65 1 8 HELIX 19 19 PRO B 72 LYS B 81 1 10 HELIX 20 20 TYR B 102 GLU B 107 1 6 HELIX 21 21 LYS B 118 SER B 122 5 5 HELIX 22 22 ALA B 125 PHE B 131 1 7 HELIX 23 23 HIS B 142 VAL B 146 5 5 HELIX 24 24 ILE B 152 GLY B 163 1 12 HELIX 25 25 SER B 174 SER B 185 1 12 HELIX 26 26 LYS B 193 LEU B 204 1 12 HELIX 27 27 PRO B 211 ASN B 216 1 6 HELIX 28 28 GLY B 217 GLY B 232 1 16 HELIX 29 29 LYS B 249 SER B 253 5 5 HELIX 30 30 SER B 256 GLU B 262 1 7 HELIX 31 31 LYS B 263 ASP B 266 5 4 HELIX 32 32 TYR B 267 GLU B 277 1 11 HELIX 33 33 ALA B 278 THR B 280 5 3 HELIX 34 34 PRO B 310 LEU B 314 5 5 HELIX 35 35 GLY B 340 GLN B 357 1 18 SHEET 1 A 5 SER A 44 ILE A 46 0 SHEET 2 A 5 THR A 32 ALA A 39 -1 N LEU A 38 O LEU A 45 SHEET 3 A 5 VAL A 5 ILE A 11 1 N VAL A 8 O ASN A 34 SHEET 4 A 5 VAL A 87 LEU A 89 1 O ILE A 88 N ALA A 9 SHEET 5 A 5 SER A 111 ILE A 112 1 O SER A 111 N VAL A 87 SHEET 1 B10 SER A 297 ASP A 306 0 SHEET 2 B10 LYS A 283 ASP A 292 -1 N ARG A 286 O GLU A 303 SHEET 3 B10 VAL A 166 ILE A 172 -1 N GLY A 171 O GLY A 289 SHEET 4 B10 ASP A 318 THR A 325 -1 O VAL A 320 N ILE A 172 SHEET 5 B10 VAL A 332 ALA A 337 -1 O GLY A 336 N ASN A 319 SHEET 6 B10 VAL B 332 ALA B 337 -1 O VAL B 333 N GLN A 335 SHEET 7 B10 ASP B 318 LYS B 324 -1 N ASN B 319 O GLY B 336 SHEET 8 B10 LYS B 168 ILE B 172 -1 N GLU B 170 O SER B 322 SHEET 9 B10 LYS B 283 ASP B 292 -1 O GLY B 289 N GLY B 171 SHEET 10 B10 SER B 297 ASP B 306 -1 O GLY B 301 N ILE B 288 SHEET 1 C 6 SER B 44 ILE B 46 0 SHEET 2 C 6 THR B 32 ALA B 39 -1 N LEU B 38 O LEU B 45 SHEET 3 C 6 VAL B 5 ILE B 11 1 N VAL B 8 O ASN B 34 SHEET 4 C 6 VAL B 87 ASP B 91 1 O VAL B 90 N ALA B 9 SHEET 5 C 6 ILE B 110 ALA B 113 1 O ALA B 113 N LEU B 89 SHEET 6 C 6 VAL B 140 TYR B 141 1 O TYR B 141 N ILE B 112 SITE 1 AC1 6 GLY A 175 THR A 176 TYR A 206 ASP A 214 SITE 2 AC1 6 ASP A 219 LYS A 223 SITE 1 AC2 7 SER B 174 GLY B 175 THR B 176 TYR B 206 SITE 2 AC2 7 ASP B 214 ASP B 219 LYS B 223 CRYST1 72.456 54.379 92.497 90.00 98.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013801 0.000000 0.002179 0.00000 SCALE2 0.000000 0.018389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010945 0.00000