HEADER OXIDOREDUCTASE 29-JUN-04 1TVL TITLE STRUCTURE OF YTNJ FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YTNJ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NITRILOTRIACETATE MONOOXYGENASE COMPONENT A HOMOLOG YTNJ; COMPND 5 EC: 1.14.13.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YTNJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26B KEYWDS BETA-ALPHA BARREL, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.GORMAN,L.SHAPIRO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 14-FEB-24 1TVL 1 REMARK REVDAT 5 03-FEB-21 1TVL 1 AUTHOR SEQADV REVDAT 4 13-JUL-11 1TVL 1 VERSN REVDAT 3 24-FEB-09 1TVL 1 VERSN REVDAT 2 25-JAN-05 1TVL 1 AUTHOR KEYWDS REMARK REVDAT 1 13-JUL-04 1TVL 0 JRNL AUTH J.GORMAN,L.SHAPIRO JRNL TITL STRUCTURE OF YTNJ FROM BACILLUS SUBTILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 43146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2179 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5834 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 306 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3068 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.09000 REMARK 3 B22 (A**2) : 2.09000 REMARK 3 B33 (A**2) : -4.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.335 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3140 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2802 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4246 ; 1.178 ; 1.923 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6515 ; 0.794 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 5.743 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;34.134 ;23.782 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 518 ;15.843 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;19.955 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3540 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 674 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 665 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2871 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1690 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 204 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.102 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 93 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.159 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2492 ; 0.988 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 796 ; 0.139 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3106 ; 1.128 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 1.951 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1140 ; 2.762 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000022945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 8-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9197 REMARK 200 MONOCHROMATOR : SI MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43146 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.104 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M NACITRATE, 0.1M HEPES PH 7.5, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.14900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.97050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.97050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 147.22350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.97050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.97050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.07450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.97050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.97050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 147.22350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.97050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.97050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.07450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.14900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -85.94100 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 85.94100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 THR A 2 REMARK 465 TYR A 301 REMARK 465 LEU A 302 REMARK 465 ALA A 303 REMARK 465 ARG A 304 REMARK 465 PHE A 305 REMARK 465 PHE A 306 REMARK 465 ASP A 307 REMARK 465 ASP A 308 REMARK 465 TYR A 309 REMARK 465 ASP A 310 REMARK 465 LEU A 311 REMARK 465 SER A 312 REMARK 465 VAL A 313 REMARK 465 TYR A 314 REMARK 465 PRO A 315 REMARK 465 LEU A 316 REMARK 465 ASP A 317 REMARK 465 GLU A 318 REMARK 465 PRO A 319 REMARK 465 PHE A 320 REMARK 465 PRO A 321 REMARK 465 ASP A 322 REMARK 465 ILE A 323 REMARK 465 GLY A 324 REMARK 465 ASP A 325 REMARK 465 VAL A 326 REMARK 465 GLY A 327 REMARK 465 LYS A 328 REMARK 465 ASN A 329 REMARK 465 ALA A 330 REMARK 465 PHE A 331 REMARK 465 GLN A 332 REMARK 465 SER A 333 REMARK 465 THR A 334 REMARK 465 THR A 335 REMARK 465 ASP A 336 REMARK 465 ARG A 337 REMARK 465 ILE A 338 REMARK 465 LYS A 339 REMARK 465 ARG A 340 REMARK 465 HIS A 433 REMARK 465 GLN A 434 REMARK 465 SER A 435 REMARK 465 VAL A 436 REMARK 465 LEU A 437 REMARK 465 HIS A 438 REMARK 465 SER A 439 REMARK 465 SER A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 GLU A 443 REMARK 465 GLY A 444 REMARK 465 GLY A 445 REMARK 465 SER A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 188 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 206 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 261 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 384 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 397 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 203 35.76 -99.48 REMARK 500 GLU A 296 -46.63 -13.23 REMARK 500 ASN A 297 30.73 -85.68 REMARK 500 SER A 390 41.78 -150.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 297 ALA A 298 145.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T773 RELATED DB: TARGETDB DBREF 1TVL A 2 442 UNP O34974 O34974_BACSU 2 442 SEQADV 1TVL MET A -1 UNP O34974 CLONING ARTIFACT SEQADV 1TVL SER A 0 UNP O34974 CLONING ARTIFACT SEQADV 1TVL LEU A 1 UNP O34974 CLONING ARTIFACT SEQADV 1TVL GLU A 443 UNP O34974 EXPRESSION TAG SEQADV 1TVL GLY A 444 UNP O34974 EXPRESSION TAG SEQADV 1TVL GLY A 445 UNP O34974 EXPRESSION TAG SEQADV 1TVL SER A 446 UNP O34974 EXPRESSION TAG SEQADV 1TVL HIS A 447 UNP O34974 EXPRESSION TAG SEQADV 1TVL HIS A 448 UNP O34974 EXPRESSION TAG SEQADV 1TVL HIS A 449 UNP O34974 EXPRESSION TAG SEQADV 1TVL HIS A 450 UNP O34974 EXPRESSION TAG SEQADV 1TVL HIS A 451 UNP O34974 EXPRESSION TAG SEQADV 1TVL HIS A 452 UNP O34974 EXPRESSION TAG SEQRES 1 A 454 MET SER LEU THR ARG ALA ASP PHE ILE GLN PHE GLY ALA SEQRES 2 A 454 MET ILE HIS GLY VAL GLY GLY THR THR ASP GLY TRP ARG SEQRES 3 A 454 HIS PRO ASP VAL ASP PRO SER ALA SER THR ASN ILE GLU SEQRES 4 A 454 PHE TYR MET LYS LYS ALA GLN THR ALA GLU LYS GLY LEU SEQRES 5 A 454 PHE SER PHE ILE PHE ILE ALA ASP GLY LEU PHE ILE SER SEQRES 6 A 454 GLU LYS SER ILE PRO HIS PHE LEU ASN ARG PHE GLU PRO SEQRES 7 A 454 ILE THR ILE LEU SER ALA LEU ALA SER VAL THR LYS ASN SEQRES 8 A 454 ILE GLY LEU VAL GLY THR PHE SER THR SER PHE THR GLU SEQRES 9 A 454 PRO PHE THR ILE SER ARG GLN LEU MET SER LEU ASP HIS SEQRES 10 A 454 ILE SER GLY GLY ARG ALA GLY TRP ASN LEU VAL THR SER SEQRES 11 A 454 PRO GLN GLU GLY ALA ALA ARG ASN HIS SER LYS SER ASN SEQRES 12 A 454 LEU PRO GLU HIS THR GLU ARG TYR GLU ILE ALA GLN GLU SEQRES 13 A 454 HIS LEU ASP VAL VAL ARG GLY LEU TRP ASN SER TRP GLU SEQRES 14 A 454 HIS ASP ALA PHE ILE HIS ASN LYS LYS THR GLY GLN PHE SEQRES 15 A 454 PHE ASP GLN ALA LYS LEU HIS ARG LEU ASN HIS LYS GLY SEQRES 16 A 454 LYS TYR PHE GLN VAL GLU GLY PRO LEU ASN ILE GLY ARG SEQRES 17 A 454 SER LYS GLN GLY GLU PRO VAL VAL PHE GLN ALA GLY SER SEQRES 18 A 454 SER GLU THR GLY ARG GLN PHE ALA ALA LYS ASN ALA ASP SEQRES 19 A 454 ALA ILE PHE THR HIS SER ASN SER LEU GLU GLU THR LYS SEQRES 20 A 454 ALA PHE TYR ALA ASP VAL LYS SER ARG ALA ALA ASP GLU SEQRES 21 A 454 GLY ARG ASP PRO SER SER VAL ARG ILE PHE PRO GLY ILE SEQRES 22 A 454 SER PRO ILE VAL ALA ASP THR GLU GLU GLU ALA GLU LYS SEQRES 23 A 454 LYS TYR ARG GLU PHE ALA GLU LEU ILE PRO ILE GLU ASN SEQRES 24 A 454 ALA VAL THR TYR LEU ALA ARG PHE PHE ASP ASP TYR ASP SEQRES 25 A 454 LEU SER VAL TYR PRO LEU ASP GLU PRO PHE PRO ASP ILE SEQRES 26 A 454 GLY ASP VAL GLY LYS ASN ALA PHE GLN SER THR THR ASP SEQRES 27 A 454 ARG ILE LYS ARG GLU ALA LYS ALA ARG ASN LEU THR LEU SEQRES 28 A 454 ARG GLU VAL ALA GLN GLU MET ALA PHE PRO ARG THR LEU SEQRES 29 A 454 PHE ILE GLY THR PRO GLU ARG VAL ALA SER LEU ILE GLU SEQRES 30 A 454 THR TRP PHE ASN ALA GLU ALA ALA ASP GLY PHE ILE VAL SEQRES 31 A 454 GLY SER ASP ILE PRO GLY THR LEU ASP ALA PHE VAL GLU SEQRES 32 A 454 LYS VAL ILE PRO ILE LEU GLN GLU ARG GLY LEU TYR ARG SEQRES 33 A 454 GLN ASP TYR ARG GLY GLY THR LEU ARG GLU ASN LEU GLY SEQRES 34 A 454 LEU GLY ILE PRO GLN HIS GLN SER VAL LEU HIS SER SER SEQRES 35 A 454 HIS HIS GLU GLY GLY SER HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *231(H2 O) HELIX 1 1 ASP A 21 HIS A 25 5 5 HELIX 2 2 SER A 31 THR A 34 5 4 HELIX 3 3 ASN A 35 GLY A 49 1 15 HELIX 4 4 ILE A 67 ASN A 72 1 6 HELIX 5 5 GLU A 75 SER A 85 1 11 HELIX 6 6 GLU A 102 SER A 117 1 16 HELIX 7 7 GLN A 130 ARG A 135 1 6 HELIX 8 8 GLU A 144 ASN A 164 1 21 HELIX 9 9 ASP A 182 LEU A 186 5 5 HELIX 10 10 SER A 220 ALA A 231 1 12 HELIX 11 11 SER A 240 GLU A 258 1 19 HELIX 12 12 ASP A 261 VAL A 265 5 5 HELIX 13 13 THR A 278 GLU A 291 1 14 HELIX 14 14 LEU A 292 ILE A 293 5 2 HELIX 15 15 PRO A 294 VAL A 299 5 6 HELIX 16 16 THR A 348 PHE A 358 1 11 HELIX 17 17 THR A 366 ALA A 380 1 15 HELIX 18 18 GLY A 394 ARG A 410 1 17 HELIX 19 19 THR A 421 GLY A 427 1 7 SHEET 1 A 9 GLN A 8 MET A 12 0 SHEET 2 A 9 PHE A 53 ILE A 56 1 O PHE A 55 N ALA A 11 SHEET 3 A 9 GLY A 91 SER A 97 1 O VAL A 93 N ILE A 54 SHEET 4 A 9 ALA A 121 VAL A 126 1 O ASN A 124 N GLY A 94 SHEET 5 A 9 VAL A 213 GLN A 216 1 O PHE A 215 N TRP A 123 SHEET 6 A 9 ALA A 233 THR A 236 1 O PHE A 235 N GLN A 216 SHEET 7 A 9 ARG A 266 ILE A 271 1 O PHE A 268 N ILE A 234 SHEET 8 A 9 GLY A 385 VAL A 388 1 O ILE A 387 N ILE A 271 SHEET 9 A 9 GLN A 8 MET A 12 1 N GLY A 10 O VAL A 388 SHEET 1 B 2 HIS A 191 LYS A 192 0 SHEET 2 B 2 GLN A 197 VAL A 198 -1 O VAL A 198 N HIS A 191 SHEET 1 C 2 ILE A 274 VAL A 275 0 SHEET 2 C 2 ILE A 364 GLY A 365 1 O GLY A 365 N ILE A 274 CISPEP 1 GLY A 200 PRO A 201 0 -2.34 CRYST1 85.941 85.941 196.298 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005094 0.00000