HEADER TRANSFERASE 30-JUN-04 1TW2 TITLE CRYSTAL STRUCTURE OF CARMINOMYCIN-4-O-METHYLTRANSFERASE (DNRK) IN TITLE 2 COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEIN (SAH) AND 4-METHOXY-E- TITLE 3 RHODOMYCIN T (M-ET) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARMINOMYCIN 4-O-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COMT; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES PEUCETIUS; SOURCE 3 ORGANISM_TAXID: 1950; SOURCE 4 GENE: DNRK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX4T-3 KEYWDS ANTHRACYCLINE, METHYLTRANSFERASE, METHYLATE, STREPTOMYCES, TAILORING KEYWDS 2 ENZYME, POLYKETIDE, S-ADENOSYL-L-HOMOCYSTEIN, STRUCTURAL PROTEOMICS KEYWDS 3 IN EUROPE, SPINE, STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.JANSSON,H.KOSKINIEMI,P.MANTSALA,J.NIEMI,G.SCHNEIDER,STRUCTURAL AUTHOR 2 PROTEOMICS IN EUROPE (SPINE) REVDAT 5 03-APR-24 1TW2 1 REMARK REVDAT 4 13-MAR-24 1TW2 1 REMARK SEQADV REVDAT 3 24-FEB-09 1TW2 1 VERSN REVDAT 2 24-JAN-06 1TW2 1 JRNL REVDAT 1 14-SEP-04 1TW2 0 JRNL AUTH A.JANSSON,H.KOSKINIEMI,P.MANTSALA,J.NIEMI,G.SCHNEIDER JRNL TITL CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF DNRK, A JRNL TITL 2 METHYLTRANSFERASE IN DAUNORUBICIN BIOSYNTHESIS, WITH BOUND JRNL TITL 3 PRODUCTS JRNL REF J.BIOL.CHEM. V. 279 41149 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15273252 JRNL DOI 10.1074/JBC.M407081200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1387 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1911 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5309 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.59000 REMARK 3 B22 (A**2) : -1.13000 REMARK 3 B33 (A**2) : 2.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.622 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.318 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.188 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5534 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5168 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7573 ; 1.531 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11881 ; 1.001 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 686 ; 6.744 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 883 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6173 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1139 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1215 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6156 ; 0.231 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3492 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 160 ; 0.199 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.215 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.300 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.103 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3444 ; 0.495 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5524 ; 0.939 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2090 ; 1.311 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2049 ; 2.250 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000022955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27569 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 79.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32200 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: RDMB+SAM+DBRA COMPLEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, SODIUM ACETATE, TRIS-BUFFER, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.34100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.12800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.29100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.12800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.34100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.29100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 PRO A -2 REMARK 465 ASN A -1 REMARK 465 SER A 0 REMARK 465 THR A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ARG A 9 REMARK 465 PRO A 10 REMARK 465 GLN A 11 REMARK 465 GLN A 12 REMARK 465 ILE A 13 REMARK 465 ALA A 352 REMARK 465 THR A 353 REMARK 465 GLY A 354 REMARK 465 ALA A 355 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 PRO B -2 REMARK 465 ASN B -1 REMARK 465 SER B 0 REMARK 465 THR B 1 REMARK 465 ALA B 2 REMARK 465 THR B 353 REMARK 465 GLY B 354 REMARK 465 ALA B 355 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 17 CD NE CZ NH1 NH2 REMARK 480 ARG A 21 CD NE CZ NH1 NH2 REMARK 480 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 180 NE CZ NH1 NH2 REMARK 480 LYS A 222 CD CE NZ REMARK 480 GLU A 294 CG CD OE1 OE2 REMARK 480 LYS A 316 CD CE NZ REMARK 480 ARG B 21 NE CZ NH1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 ILE A 68 O HOH A 722 0.86 REMARK 500 O HOH A 694 O HOH A 726 0.95 REMARK 500 OD2 ASP A 184 O HOH A 718 2.09 REMARK 500 CG2 THR A 109 O HOH A 725 2.15 REMARK 500 OE2 GLU B 330 O HOH B 1671 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 283 CB GLU A 283 CG -0.273 REMARK 500 ARG A 284 C ASP A 285 N -0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 97 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 223 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 GLU A 283 N - CA - CB ANGL. DEV. = -16.8 DEGREES REMARK 500 ARG A 284 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 ASP B 97 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 107 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 156 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 168 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 312 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 312 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP B 318 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 20.86 -163.18 REMARK 500 ASP A 80 -71.70 -95.81 REMARK 500 GLN A 163 -44.93 -27.19 REMARK 500 GLU A 283 -119.30 -135.13 REMARK 500 ASP A 286 146.31 179.36 REMARK 500 GLN B 12 49.50 -99.67 REMARK 500 CYS B 161 -78.88 -5.28 REMARK 500 ASN B 178 30.39 -90.91 REMARK 500 GLU B 283 -138.90 -161.56 REMARK 500 ASP B 285 23.63 -142.69 REMARK 500 PHE B 292 54.33 -97.71 REMARK 500 LEU B 307 -12.55 -140.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS A 282 14.19 REMARK 500 ARG A 284 10.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 635 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ERT A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 1635 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ERT B 1600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QZZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACLACINOMYCIN-10-HYDROXYLASE (RDMB) IN COMPLEX REMARK 900 WITH S-ADENOSYL-L-METHIONINE (SAM) REMARK 900 RELATED ID: 1R00 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACLACINOMYCIN-10-HYDROXYLASE (RDMB) IN COMPLEX REMARK 900 WITH S-ADENOSYL-L-HOMOCYSTEIN (SAH) REMARK 900 RELATED ID: 1TW3 RELATED DB: PDB REMARK 900 CARMINOMYCIN-4-O-METHYLTRANSFERASE (DNRK) IN COMPLEX WITH S- REMARK 900 ADENOSYL-L-HOMOCYSTEIN (SAH)AND 4-METHOXY-E-RHODOMYCIN T (M-ET) AT REMARK 900 2.35 A REMARK 900 RELATED ID: ST_04 RELATED DB: TARGETDB DBREF 1TW2 A 1 355 UNP Q06528 CM4T_STRPE 1 355 DBREF 1TW2 B 1 355 UNP Q06528 CM4T_STRPE 1 355 SEQADV 1TW2 GLY A -4 UNP Q06528 CLONING ARTIFACT SEQADV 1TW2 SER A -3 UNP Q06528 CLONING ARTIFACT SEQADV 1TW2 PRO A -2 UNP Q06528 CLONING ARTIFACT SEQADV 1TW2 ASN A -1 UNP Q06528 CLONING ARTIFACT SEQADV 1TW2 SER A 0 UNP Q06528 CLONING ARTIFACT SEQADV 1TW2 GLY B -4 UNP Q06528 CLONING ARTIFACT SEQADV 1TW2 SER B -3 UNP Q06528 CLONING ARTIFACT SEQADV 1TW2 PRO B -2 UNP Q06528 CLONING ARTIFACT SEQADV 1TW2 ASN B -1 UNP Q06528 CLONING ARTIFACT SEQADV 1TW2 SER B 0 UNP Q06528 CLONING ARTIFACT SEQRES 1 A 360 GLY SER PRO ASN SER THR ALA GLU PRO THR VAL ALA ALA SEQRES 2 A 360 ARG PRO GLN GLN ILE ASP ALA LEU ARG THR LEU ILE ARG SEQRES 3 A 360 LEU GLY SER LEU HIS THR PRO MET VAL VAL ARG THR ALA SEQRES 4 A 360 ALA THR LEU ARG LEU VAL ASP HIS ILE LEU ALA GLY ALA SEQRES 5 A 360 ARG THR VAL LYS ALA LEU ALA ALA ARG THR ASP THR ARG SEQRES 6 A 360 PRO GLU ALA LEU LEU ARG LEU ILE ARG HIS LEU VAL ALA SEQRES 7 A 360 ILE GLY LEU LEU GLU GLU ASP ALA PRO GLY GLU PHE VAL SEQRES 8 A 360 PRO THR GLU VAL GLY GLU LEU LEU ALA ASP ASP HIS PRO SEQRES 9 A 360 ALA ALA GLN ARG ALA TRP HIS ASP LEU THR GLN ALA VAL SEQRES 10 A 360 ALA ARG ALA ASP ILE SER PHE THR ARG LEU PRO ASP ALA SEQRES 11 A 360 ILE ARG THR GLY ARG PRO THR TYR GLU SER ILE TYR GLY SEQRES 12 A 360 LYS PRO PHE TYR GLU ASP LEU ALA GLY ARG PRO ASP LEU SEQRES 13 A 360 ARG ALA SER PHE ASP SER LEU LEU ALA CYS ASP GLN ASP SEQRES 14 A 360 VAL ALA PHE ASP ALA PRO ALA ALA ALA TYR ASP TRP THR SEQRES 15 A 360 ASN VAL ARG HIS VAL LEU ASP VAL GLY GLY GLY LYS GLY SEQRES 16 A 360 GLY PHE ALA ALA ALA ILE ALA ARG ARG ALA PRO HIS VAL SEQRES 17 A 360 SER ALA THR VAL LEU GLU MET ALA GLY THR VAL ASP THR SEQRES 18 A 360 ALA ARG SER TYR LEU LYS ASP GLU GLY LEU SER ASP ARG SEQRES 19 A 360 VAL ASP VAL VAL GLU GLY ASP PHE PHE GLU PRO LEU PRO SEQRES 20 A 360 ARG LYS ALA ASP ALA ILE ILE LEU SER PHE VAL LEU LEU SEQRES 21 A 360 ASN TRP PRO ASP HIS ASP ALA VAL ARG ILE LEU THR ARG SEQRES 22 A 360 CYS ALA GLU ALA LEU GLU PRO GLY GLY ARG ILE LEU ILE SEQRES 23 A 360 HIS GLU ARG ASP ASP LEU HIS GLU ASN SER PHE ASN GLU SEQRES 24 A 360 GLN PHE THR GLU LEU ASP LEU ARG MET LEU VAL PHE LEU SEQRES 25 A 360 GLY GLY ALA LEU ARG THR ARG GLU LYS TRP ASP GLY LEU SEQRES 26 A 360 ALA ALA SER ALA GLY LEU VAL VAL GLU GLU VAL ARG GLN SEQRES 27 A 360 LEU PRO SER PRO THR ILE PRO TYR ASP LEU SER LEU LEU SEQRES 28 A 360 VAL LEU ALA PRO ALA ALA THR GLY ALA SEQRES 1 B 360 GLY SER PRO ASN SER THR ALA GLU PRO THR VAL ALA ALA SEQRES 2 B 360 ARG PRO GLN GLN ILE ASP ALA LEU ARG THR LEU ILE ARG SEQRES 3 B 360 LEU GLY SER LEU HIS THR PRO MET VAL VAL ARG THR ALA SEQRES 4 B 360 ALA THR LEU ARG LEU VAL ASP HIS ILE LEU ALA GLY ALA SEQRES 5 B 360 ARG THR VAL LYS ALA LEU ALA ALA ARG THR ASP THR ARG SEQRES 6 B 360 PRO GLU ALA LEU LEU ARG LEU ILE ARG HIS LEU VAL ALA SEQRES 7 B 360 ILE GLY LEU LEU GLU GLU ASP ALA PRO GLY GLU PHE VAL SEQRES 8 B 360 PRO THR GLU VAL GLY GLU LEU LEU ALA ASP ASP HIS PRO SEQRES 9 B 360 ALA ALA GLN ARG ALA TRP HIS ASP LEU THR GLN ALA VAL SEQRES 10 B 360 ALA ARG ALA ASP ILE SER PHE THR ARG LEU PRO ASP ALA SEQRES 11 B 360 ILE ARG THR GLY ARG PRO THR TYR GLU SER ILE TYR GLY SEQRES 12 B 360 LYS PRO PHE TYR GLU ASP LEU ALA GLY ARG PRO ASP LEU SEQRES 13 B 360 ARG ALA SER PHE ASP SER LEU LEU ALA CYS ASP GLN ASP SEQRES 14 B 360 VAL ALA PHE ASP ALA PRO ALA ALA ALA TYR ASP TRP THR SEQRES 15 B 360 ASN VAL ARG HIS VAL LEU ASP VAL GLY GLY GLY LYS GLY SEQRES 16 B 360 GLY PHE ALA ALA ALA ILE ALA ARG ARG ALA PRO HIS VAL SEQRES 17 B 360 SER ALA THR VAL LEU GLU MET ALA GLY THR VAL ASP THR SEQRES 18 B 360 ALA ARG SER TYR LEU LYS ASP GLU GLY LEU SER ASP ARG SEQRES 19 B 360 VAL ASP VAL VAL GLU GLY ASP PHE PHE GLU PRO LEU PRO SEQRES 20 B 360 ARG LYS ALA ASP ALA ILE ILE LEU SER PHE VAL LEU LEU SEQRES 21 B 360 ASN TRP PRO ASP HIS ASP ALA VAL ARG ILE LEU THR ARG SEQRES 22 B 360 CYS ALA GLU ALA LEU GLU PRO GLY GLY ARG ILE LEU ILE SEQRES 23 B 360 HIS GLU ARG ASP ASP LEU HIS GLU ASN SER PHE ASN GLU SEQRES 24 B 360 GLN PHE THR GLU LEU ASP LEU ARG MET LEU VAL PHE LEU SEQRES 25 B 360 GLY GLY ALA LEU ARG THR ARG GLU LYS TRP ASP GLY LEU SEQRES 26 B 360 ALA ALA SER ALA GLY LEU VAL VAL GLU GLU VAL ARG GLN SEQRES 27 B 360 LEU PRO SER PRO THR ILE PRO TYR ASP LEU SER LEU LEU SEQRES 28 B 360 VAL LEU ALA PRO ALA ALA THR GLY ALA HET SAH A 635 26 HET ERT A 600 43 HET SAH B1635 26 HET ERT B1600 43 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM ERT METHYL (4R)-2-ETHYL-2,5,12-TRIHYDROXY-7-METHOXY-6,11- HETNAM 2 ERT DIOXO-4-{[2,3,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D- HETNAM 3 ERT RIBO-HEXOPYRANOSYL]OXY}-1H,2H,3H,4H,6H,11H-TETRACENE- HETNAM 4 ERT 1-CARBOXYLATE HETSYN ERT 4-METHOXY-E-RHODOMYCIN T FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 ERT 2(C31 H37 N O11) FORMUL 7 HOH *165(H2 O) HELIX 1 1 ALA A 15 GLY A 23 1 9 HELIX 2 2 LEU A 25 LEU A 37 1 13 HELIX 3 3 ARG A 38 ALA A 45 1 8 HELIX 4 4 THR A 49 ASP A 58 1 10 HELIX 5 5 ARG A 60 ILE A 74 1 15 HELIX 6 6 VAL A 90 ALA A 95 5 6 HELIX 7 7 ALA A 101 HIS A 106 1 6 HELIX 8 8 GLN A 110 ILE A 117 1 8 HELIX 9 9 SER A 118 THR A 120 5 3 HELIX 10 10 ARG A 121 GLY A 129 1 9 HELIX 11 11 THR A 132 GLY A 138 1 7 HELIX 12 12 PRO A 140 GLY A 147 1 8 HELIX 13 13 ARG A 148 ALA A 160 1 13 HELIX 14 14 PHE A 167 ALA A 173 1 7 HELIX 15 15 GLY A 190 ALA A 200 1 11 HELIX 16 16 GLY A 212 GLU A 224 1 13 HELIX 17 17 VAL A 253 TRP A 257 5 5 HELIX 18 18 PRO A 258 ALA A 272 1 15 HELIX 19 19 ASN A 293 GLY A 308 1 16 HELIX 20 20 THR A 313 ALA A 324 1 12 HELIX 21 21 GLN B 12 GLY B 23 1 12 HELIX 22 22 LEU B 25 LEU B 37 1 13 HELIX 23 23 ARG B 38 ALA B 45 1 8 HELIX 24 24 THR B 49 ASP B 58 1 10 HELIX 25 25 ARG B 60 ILE B 74 1 15 HELIX 26 26 VAL B 90 ALA B 95 5 6 HELIX 27 27 ALA B 101 HIS B 106 1 6 HELIX 28 28 GLN B 110 ILE B 117 1 8 HELIX 29 29 SER B 118 THR B 120 5 3 HELIX 30 30 ARG B 121 GLY B 129 1 9 HELIX 31 31 THR B 132 GLY B 138 1 7 HELIX 32 32 PRO B 140 GLY B 147 1 8 HELIX 33 33 ARG B 148 ALA B 160 1 13 HELIX 34 34 PHE B 167 ALA B 173 1 7 HELIX 35 35 GLY B 190 ALA B 200 1 11 HELIX 36 36 GLY B 212 GLU B 224 1 13 HELIX 37 37 VAL B 253 TRP B 257 5 5 HELIX 38 38 PRO B 258 ALA B 272 1 15 HELIX 39 39 LEU B 287 SER B 291 5 5 HELIX 40 40 ASN B 293 GLY B 308 1 16 HELIX 41 41 GLU B 315 ALA B 324 1 10 SHEET 1 A 2 LEU A 77 GLU A 79 0 SHEET 2 A 2 PHE A 85 PRO A 87 -1 O VAL A 86 N GLU A 78 SHEET 1 B 7 VAL A 230 GLU A 234 0 SHEET 2 B 7 SER A 204 GLU A 209 1 N VAL A 207 O VAL A 233 SHEET 3 B 7 HIS A 181 VAL A 185 1 N ASP A 184 O THR A 206 SHEET 4 B 7 ALA A 245 SER A 251 1 O ILE A 249 N LEU A 183 SHEET 5 B 7 LEU A 273 GLU A 283 1 O LEU A 280 N LEU A 250 SHEET 6 B 7 ASP A 342 PRO A 350 -1 O LEU A 348 N ILE A 279 SHEET 7 B 7 LEU A 326 PRO A 335 -1 N LEU A 334 O LEU A 343 SHEET 1 C 2 LEU B 77 GLU B 79 0 SHEET 2 C 2 PHE B 85 PRO B 87 -1 O VAL B 86 N GLU B 78 SHEET 1 D 7 VAL B 230 GLU B 234 0 SHEET 2 D 7 SER B 204 GLU B 209 1 N VAL B 207 O ASP B 231 SHEET 3 D 7 HIS B 181 VAL B 185 1 N ASP B 184 O THR B 206 SHEET 4 D 7 ALA B 245 SER B 251 1 O ILE B 249 N LEU B 183 SHEET 5 D 7 LEU B 273 ARG B 284 1 O LEU B 280 N ILE B 248 SHEET 6 D 7 LEU B 343 PRO B 350 -1 O LEU B 348 N ILE B 279 SHEET 7 D 7 LEU B 326 LEU B 334 -1 N LEU B 334 O LEU B 343 SITE 1 AC1 16 TYR A 142 ARG A 152 LEU A 159 PHE A 167 SITE 2 AC1 16 GLY A 186 GLY A 187 GLU A 209 MET A 210 SITE 3 AC1 16 GLY A 235 ASP A 236 PHE A 237 SER A 251 SITE 4 AC1 16 PHE A 252 TRP A 257 ERT A 600 HOH A 637 SITE 1 AC2 15 TRP A 105 TYR A 142 PHE A 155 LEU A 159 SITE 2 AC2 15 CYS A 161 ASP A 162 PHE A 252 ASN A 256 SITE 3 AC2 15 GLU A 298 LEU A 299 ARG A 302 PHE A 306 SITE 4 AC2 15 SAH A 635 HOH A 662 HOH A 705 SITE 1 AC3 17 TYR B 142 ARG B 152 LEU B 159 PHE B 167 SITE 2 AC3 17 GLY B 186 GLY B 187 GLU B 209 MET B 210 SITE 3 AC3 17 GLY B 235 ASP B 236 PHE B 237 SER B 251 SITE 4 AC3 17 PHE B 252 ASN B 256 ERT B1600 HOH B1649 SITE 5 AC3 17 HOH B1655 SITE 1 AC4 12 TRP B 105 PHE B 155 LEU B 159 ALA B 166 SITE 2 AC4 12 PHE B 252 ASN B 256 LEU B 299 ARG B 302 SITE 3 AC4 12 MET B 303 LEU B 343 SAH B1635 HOH B1703 CRYST1 60.682 102.582 124.256 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016479 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009748 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008048 0.00000