HEADER LYASE 01-JUL-04 1TWI TITLE CRYSTAL STRUCTURE OF DIAMINOPIMELATE DECARBOXYLASE FROM M. JANNASCHII TITLE 2 IN CO-COMPLEX WITH L-LYSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIAMINOPIMELATE DECARBOXYLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DAP DECARBOXYLASE; COMPND 5 EC: 4.1.1.20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: LYSA, MJ1097; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET T7 KEYWDS ANTIBIOTIC RESISTANCE, DIAMINOPIMELATE DECARBOXYLASE, LYSINE KEYWDS 2 BIOSYNTHESIS, STRUCTURAL GENOMICS, NYSGXRC, T135, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.R.RAJASHANKAR,S.S.RAY,J.B.BONANNO,M.G.PINHO,G.HE,H.DE LENCASTRE, AUTHOR 2 A.TOMASZ,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 6 23-AUG-23 1TWI 1 REMARK REVDAT 5 03-FEB-21 1TWI 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 2 1 LINK REVDAT 4 13-JUL-11 1TWI 1 VERSN REVDAT 3 24-FEB-09 1TWI 1 VERSN REVDAT 2 25-JAN-05 1TWI 1 AUTHOR KEYWDS REMARK REVDAT 1 27-JUL-04 1TWI 0 JRNL AUTH K.R.RAJASHANKAR,S.S.RAY,J.B.BONANNO,M.G.PINHO,G.HE, JRNL AUTH 2 H.DE LENCASTRE,A.TOMASZ,S.K.BURLEY JRNL TITL COCRYSTAL STRUCTURES OF DIAMINOPIMELATE DECARBOXYLASE: JRNL TITL 2 MECHANISM, EVOLUTION, AND INHIBITION OF AN ANTIBIOTIC JRNL TITL 3 RESISTANCE ACCESSORY FACTOR JRNL REF STRUCTURE V. 10 1499 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12429091 JRNL DOI 10.1016/S0969-2126(02)00880-8 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 574854.750 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 119149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6016 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 18720 REMARK 3 BIN R VALUE (WORKING SET) : 0.1500 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1031 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.007 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 13580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 125 REMARK 3 SOLVENT ATOMS : 1423 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.93000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : -0.0 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.021 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.110 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.260 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.770 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.360 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.300 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 53.89 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : PL.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : PL.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE ARE FOUR MOLECULES IN THE REMARK 3 ASYMMETRIC UNIT. EACH HAS A BOUND PLP. MOLECULES A AND B HAVE AN REMARK 3 L-LYSINE BOUND AT THE ACTIVE SITE. MOLECULES C AND D HAVE TWO L- REMARK 3 LYSINES NEAR THE ACTIVE SITE. ONE MG+2 ION IS LOCATED. REMARK 4 REMARK 4 1TWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000022971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119738 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.10100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 13.06 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1TUF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG6000, 0.1M TRIS-HCL, PH 8.0, REMARK 280 20MM MGCL2, 10MM L-LYSINE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.53500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROTOMERS A AND B TOGETHER FORM ONE BIOLOGICAL ASSEMBLY AND REMARK 300 PROTOMERS C AND D TOGETHER FORM A SECOND ONE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 58.96120 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 73.53500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 88.67433 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 69 CG GLU A 69 CD 0.097 REMARK 500 CYS D 372 CB CYS D 372 SG 0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 343 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG D 307 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 18 77.88 -102.33 REMARK 500 ASN A 85 108.90 175.54 REMARK 500 LYS A 386 118.32 -34.88 REMARK 500 ASN B 85 117.22 179.47 REMARK 500 ALA B 144 149.22 -173.46 REMARK 500 ASN B 176 64.05 -68.50 REMARK 500 CYS B 372 46.96 -87.53 REMARK 500 LYS B 386 115.63 -32.52 REMARK 500 ASN C 85 110.75 -179.88 REMARK 500 ALA C 144 146.95 -171.30 REMARK 500 LYS C 386 118.33 -32.28 REMARK 500 ASP D 25 51.12 36.87 REMARK 500 ASN D 85 110.91 178.73 REMARK 500 ALA D 144 148.06 -172.43 REMARK 500 LYS D 386 117.78 -38.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1607 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C1688 O REMARK 620 2 HOH C1711 O 92.2 REMARK 620 3 HOH C1728 O 90.1 99.5 REMARK 620 4 HOH C1729 O 81.1 165.7 93.2 REMARK 620 5 HOH C1842 O 79.5 85.3 168.7 81.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 1607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS D 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS D 1602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS D 1603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS D 1604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS D 1605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS D 1606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP C 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP D 1504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TUF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DIAMINOPIMELATE DECARBOXYLASE FROM M. JANNASCHI REMARK 900 RELATED ID: NYSGXRC-T135 RELATED DB: TARGETDB DBREF 1TWI A 16 448 UNP Q58497 DCDA_METJA 6 438 DBREF 1TWI B 16 448 UNP Q58497 DCDA_METJA 6 438 DBREF 1TWI C 16 448 UNP Q58497 DCDA_METJA 6 438 DBREF 1TWI D 16 448 UNP Q58497 DCDA_METJA 6 438 SEQADV 1TWI MET A 15 UNP Q58497 INITIATING METHIONINE SEQADV 1TWI MET B 15 UNP Q58497 INITIATING METHIONINE SEQADV 1TWI MET C 15 UNP Q58497 INITIATING METHIONINE SEQADV 1TWI MET D 15 UNP Q58497 INITIATING METHIONINE SEQRES 1 A 434 MET LEU GLY ASN ASP THR VAL GLU ILE LYS ASP GLY ARG SEQRES 2 A 434 PHE PHE ILE ASP GLY TYR ASP ALA ILE GLU LEU ALA GLU SEQRES 3 A 434 LYS PHE GLY THR PRO LEU TYR VAL MET SER GLU GLU GLN SEQRES 4 A 434 ILE LYS ILE ASN TYR ASN ARG TYR ILE GLU ALA PHE LYS SEQRES 5 A 434 ARG TRP GLU GLU GLU THR GLY LYS GLU PHE ILE VAL ALA SEQRES 6 A 434 TYR ALA TYR LYS ALA ASN ALA ASN LEU ALA ILE THR ARG SEQRES 7 A 434 LEU LEU ALA LYS LEU GLY CYS GLY ALA ASP VAL VAL SER SEQRES 8 A 434 GLY GLY GLU LEU TYR ILE ALA LYS LEU SER ASN VAL PRO SEQRES 9 A 434 SER LYS LYS ILE VAL PHE ASN GLY ASN CYS LYS THR LYS SEQRES 10 A 434 GLU GLU ILE ILE MET GLY ILE GLU ALA ASN ILE ARG ALA SEQRES 11 A 434 PHE ASN VAL ASP SER ILE SER GLU LEU ILE LEU ILE ASN SEQRES 12 A 434 GLU THR ALA LYS GLU LEU GLY GLU THR ALA ASN VAL ALA SEQRES 13 A 434 PHE ARG ILE ASN PRO ASN VAL ASN PRO LYS THR HIS PRO SEQRES 14 A 434 LYS ILE SER THR GLY LEU LYS LYS ASN LYS PHE GLY LEU SEQRES 15 A 434 ASP VAL GLU SER GLY ILE ALA MET LYS ALA ILE LYS MET SEQRES 16 A 434 ALA LEU GLU MET GLU TYR VAL ASN VAL VAL GLY VAL HIS SEQRES 17 A 434 CYS HIS ILE GLY SER GLN LEU THR ASP ILE SER PRO PHE SEQRES 18 A 434 ILE GLU GLU THR ARG LYS VAL MET ASP PHE VAL VAL GLU SEQRES 19 A 434 LEU LYS GLU GLU GLY ILE GLU ILE GLU ASP VAL ASN LEU SEQRES 20 A 434 GLY GLY GLY LEU GLY ILE PRO TYR TYR LYS ASP LYS GLN SEQRES 21 A 434 ILE PRO THR GLN LYS ASP LEU ALA ASP ALA ILE ILE ASN SEQRES 22 A 434 THR MET LEU LYS TYR LYS ASP LYS VAL GLU MET PRO ASN SEQRES 23 A 434 LEU ILE LEU GLU PRO GLY ARG SER LEU VAL ALA THR ALA SEQRES 24 A 434 GLY TYR LEU LEU GLY LYS VAL HIS HIS ILE LYS GLU THR SEQRES 25 A 434 PRO VAL THR LYS TRP VAL MET ILE ASP ALA GLY MET ASN SEQRES 26 A 434 ASP MET MET ARG PRO ALA MET TYR GLU ALA TYR HIS HIS SEQRES 27 A 434 ILE ILE ASN CYS LYS VAL LYS ASN GLU LYS GLU VAL VAL SEQRES 28 A 434 SER ILE ALA GLY GLY LEU CYS GLU SER SER ASP VAL PHE SEQRES 29 A 434 GLY ARG ASP ARG GLU LEU ASP LYS VAL GLU VAL GLY ASP SEQRES 30 A 434 VAL LEU ALA ILE PHE ASP VAL GLY ALA TYR GLY ILE SER SEQRES 31 A 434 MET ALA ASN ASN TYR ASN ALA ARG GLY ARG PRO ARG MET SEQRES 32 A 434 VAL LEU THR SER LYS LYS GLY VAL PHE LEU ILE ARG GLU SEQRES 33 A 434 ARG GLU THR TYR ALA ASP LEU ILE ALA LYS ASP ILE VAL SEQRES 34 A 434 PRO PRO HIS LEU LEU SEQRES 1 B 434 MET LEU GLY ASN ASP THR VAL GLU ILE LYS ASP GLY ARG SEQRES 2 B 434 PHE PHE ILE ASP GLY TYR ASP ALA ILE GLU LEU ALA GLU SEQRES 3 B 434 LYS PHE GLY THR PRO LEU TYR VAL MET SER GLU GLU GLN SEQRES 4 B 434 ILE LYS ILE ASN TYR ASN ARG TYR ILE GLU ALA PHE LYS SEQRES 5 B 434 ARG TRP GLU GLU GLU THR GLY LYS GLU PHE ILE VAL ALA SEQRES 6 B 434 TYR ALA TYR LYS ALA ASN ALA ASN LEU ALA ILE THR ARG SEQRES 7 B 434 LEU LEU ALA LYS LEU GLY CYS GLY ALA ASP VAL VAL SER SEQRES 8 B 434 GLY GLY GLU LEU TYR ILE ALA LYS LEU SER ASN VAL PRO SEQRES 9 B 434 SER LYS LYS ILE VAL PHE ASN GLY ASN CYS LYS THR LYS SEQRES 10 B 434 GLU GLU ILE ILE MET GLY ILE GLU ALA ASN ILE ARG ALA SEQRES 11 B 434 PHE ASN VAL ASP SER ILE SER GLU LEU ILE LEU ILE ASN SEQRES 12 B 434 GLU THR ALA LYS GLU LEU GLY GLU THR ALA ASN VAL ALA SEQRES 13 B 434 PHE ARG ILE ASN PRO ASN VAL ASN PRO LYS THR HIS PRO SEQRES 14 B 434 LYS ILE SER THR GLY LEU LYS LYS ASN LYS PHE GLY LEU SEQRES 15 B 434 ASP VAL GLU SER GLY ILE ALA MET LYS ALA ILE LYS MET SEQRES 16 B 434 ALA LEU GLU MET GLU TYR VAL ASN VAL VAL GLY VAL HIS SEQRES 17 B 434 CYS HIS ILE GLY SER GLN LEU THR ASP ILE SER PRO PHE SEQRES 18 B 434 ILE GLU GLU THR ARG LYS VAL MET ASP PHE VAL VAL GLU SEQRES 19 B 434 LEU LYS GLU GLU GLY ILE GLU ILE GLU ASP VAL ASN LEU SEQRES 20 B 434 GLY GLY GLY LEU GLY ILE PRO TYR TYR LYS ASP LYS GLN SEQRES 21 B 434 ILE PRO THR GLN LYS ASP LEU ALA ASP ALA ILE ILE ASN SEQRES 22 B 434 THR MET LEU LYS TYR LYS ASP LYS VAL GLU MET PRO ASN SEQRES 23 B 434 LEU ILE LEU GLU PRO GLY ARG SER LEU VAL ALA THR ALA SEQRES 24 B 434 GLY TYR LEU LEU GLY LYS VAL HIS HIS ILE LYS GLU THR SEQRES 25 B 434 PRO VAL THR LYS TRP VAL MET ILE ASP ALA GLY MET ASN SEQRES 26 B 434 ASP MET MET ARG PRO ALA MET TYR GLU ALA TYR HIS HIS SEQRES 27 B 434 ILE ILE ASN CYS LYS VAL LYS ASN GLU LYS GLU VAL VAL SEQRES 28 B 434 SER ILE ALA GLY GLY LEU CYS GLU SER SER ASP VAL PHE SEQRES 29 B 434 GLY ARG ASP ARG GLU LEU ASP LYS VAL GLU VAL GLY ASP SEQRES 30 B 434 VAL LEU ALA ILE PHE ASP VAL GLY ALA TYR GLY ILE SER SEQRES 31 B 434 MET ALA ASN ASN TYR ASN ALA ARG GLY ARG PRO ARG MET SEQRES 32 B 434 VAL LEU THR SER LYS LYS GLY VAL PHE LEU ILE ARG GLU SEQRES 33 B 434 ARG GLU THR TYR ALA ASP LEU ILE ALA LYS ASP ILE VAL SEQRES 34 B 434 PRO PRO HIS LEU LEU SEQRES 1 C 434 MET LEU GLY ASN ASP THR VAL GLU ILE LYS ASP GLY ARG SEQRES 2 C 434 PHE PHE ILE ASP GLY TYR ASP ALA ILE GLU LEU ALA GLU SEQRES 3 C 434 LYS PHE GLY THR PRO LEU TYR VAL MET SER GLU GLU GLN SEQRES 4 C 434 ILE LYS ILE ASN TYR ASN ARG TYR ILE GLU ALA PHE LYS SEQRES 5 C 434 ARG TRP GLU GLU GLU THR GLY LYS GLU PHE ILE VAL ALA SEQRES 6 C 434 TYR ALA TYR LYS ALA ASN ALA ASN LEU ALA ILE THR ARG SEQRES 7 C 434 LEU LEU ALA LYS LEU GLY CYS GLY ALA ASP VAL VAL SER SEQRES 8 C 434 GLY GLY GLU LEU TYR ILE ALA LYS LEU SER ASN VAL PRO SEQRES 9 C 434 SER LYS LYS ILE VAL PHE ASN GLY ASN CYS LYS THR LYS SEQRES 10 C 434 GLU GLU ILE ILE MET GLY ILE GLU ALA ASN ILE ARG ALA SEQRES 11 C 434 PHE ASN VAL ASP SER ILE SER GLU LEU ILE LEU ILE ASN SEQRES 12 C 434 GLU THR ALA LYS GLU LEU GLY GLU THR ALA ASN VAL ALA SEQRES 13 C 434 PHE ARG ILE ASN PRO ASN VAL ASN PRO LYS THR HIS PRO SEQRES 14 C 434 LYS ILE SER THR GLY LEU LYS LYS ASN LYS PHE GLY LEU SEQRES 15 C 434 ASP VAL GLU SER GLY ILE ALA MET LYS ALA ILE LYS MET SEQRES 16 C 434 ALA LEU GLU MET GLU TYR VAL ASN VAL VAL GLY VAL HIS SEQRES 17 C 434 CYS HIS ILE GLY SER GLN LEU THR ASP ILE SER PRO PHE SEQRES 18 C 434 ILE GLU GLU THR ARG LYS VAL MET ASP PHE VAL VAL GLU SEQRES 19 C 434 LEU LYS GLU GLU GLY ILE GLU ILE GLU ASP VAL ASN LEU SEQRES 20 C 434 GLY GLY GLY LEU GLY ILE PRO TYR TYR LYS ASP LYS GLN SEQRES 21 C 434 ILE PRO THR GLN LYS ASP LEU ALA ASP ALA ILE ILE ASN SEQRES 22 C 434 THR MET LEU LYS TYR LYS ASP LYS VAL GLU MET PRO ASN SEQRES 23 C 434 LEU ILE LEU GLU PRO GLY ARG SER LEU VAL ALA THR ALA SEQRES 24 C 434 GLY TYR LEU LEU GLY LYS VAL HIS HIS ILE LYS GLU THR SEQRES 25 C 434 PRO VAL THR LYS TRP VAL MET ILE ASP ALA GLY MET ASN SEQRES 26 C 434 ASP MET MET ARG PRO ALA MET TYR GLU ALA TYR HIS HIS SEQRES 27 C 434 ILE ILE ASN CYS LYS VAL LYS ASN GLU LYS GLU VAL VAL SEQRES 28 C 434 SER ILE ALA GLY GLY LEU CYS GLU SER SER ASP VAL PHE SEQRES 29 C 434 GLY ARG ASP ARG GLU LEU ASP LYS VAL GLU VAL GLY ASP SEQRES 30 C 434 VAL LEU ALA ILE PHE ASP VAL GLY ALA TYR GLY ILE SER SEQRES 31 C 434 MET ALA ASN ASN TYR ASN ALA ARG GLY ARG PRO ARG MET SEQRES 32 C 434 VAL LEU THR SER LYS LYS GLY VAL PHE LEU ILE ARG GLU SEQRES 33 C 434 ARG GLU THR TYR ALA ASP LEU ILE ALA LYS ASP ILE VAL SEQRES 34 C 434 PRO PRO HIS LEU LEU SEQRES 1 D 434 MET LEU GLY ASN ASP THR VAL GLU ILE LYS ASP GLY ARG SEQRES 2 D 434 PHE PHE ILE ASP GLY TYR ASP ALA ILE GLU LEU ALA GLU SEQRES 3 D 434 LYS PHE GLY THR PRO LEU TYR VAL MET SER GLU GLU GLN SEQRES 4 D 434 ILE LYS ILE ASN TYR ASN ARG TYR ILE GLU ALA PHE LYS SEQRES 5 D 434 ARG TRP GLU GLU GLU THR GLY LYS GLU PHE ILE VAL ALA SEQRES 6 D 434 TYR ALA TYR LYS ALA ASN ALA ASN LEU ALA ILE THR ARG SEQRES 7 D 434 LEU LEU ALA LYS LEU GLY CYS GLY ALA ASP VAL VAL SER SEQRES 8 D 434 GLY GLY GLU LEU TYR ILE ALA LYS LEU SER ASN VAL PRO SEQRES 9 D 434 SER LYS LYS ILE VAL PHE ASN GLY ASN CYS LYS THR LYS SEQRES 10 D 434 GLU GLU ILE ILE MET GLY ILE GLU ALA ASN ILE ARG ALA SEQRES 11 D 434 PHE ASN VAL ASP SER ILE SER GLU LEU ILE LEU ILE ASN SEQRES 12 D 434 GLU THR ALA LYS GLU LEU GLY GLU THR ALA ASN VAL ALA SEQRES 13 D 434 PHE ARG ILE ASN PRO ASN VAL ASN PRO LYS THR HIS PRO SEQRES 14 D 434 LYS ILE SER THR GLY LEU LYS LYS ASN LYS PHE GLY LEU SEQRES 15 D 434 ASP VAL GLU SER GLY ILE ALA MET LYS ALA ILE LYS MET SEQRES 16 D 434 ALA LEU GLU MET GLU TYR VAL ASN VAL VAL GLY VAL HIS SEQRES 17 D 434 CYS HIS ILE GLY SER GLN LEU THR ASP ILE SER PRO PHE SEQRES 18 D 434 ILE GLU GLU THR ARG LYS VAL MET ASP PHE VAL VAL GLU SEQRES 19 D 434 LEU LYS GLU GLU GLY ILE GLU ILE GLU ASP VAL ASN LEU SEQRES 20 D 434 GLY GLY GLY LEU GLY ILE PRO TYR TYR LYS ASP LYS GLN SEQRES 21 D 434 ILE PRO THR GLN LYS ASP LEU ALA ASP ALA ILE ILE ASN SEQRES 22 D 434 THR MET LEU LYS TYR LYS ASP LYS VAL GLU MET PRO ASN SEQRES 23 D 434 LEU ILE LEU GLU PRO GLY ARG SER LEU VAL ALA THR ALA SEQRES 24 D 434 GLY TYR LEU LEU GLY LYS VAL HIS HIS ILE LYS GLU THR SEQRES 25 D 434 PRO VAL THR LYS TRP VAL MET ILE ASP ALA GLY MET ASN SEQRES 26 D 434 ASP MET MET ARG PRO ALA MET TYR GLU ALA TYR HIS HIS SEQRES 27 D 434 ILE ILE ASN CYS LYS VAL LYS ASN GLU LYS GLU VAL VAL SEQRES 28 D 434 SER ILE ALA GLY GLY LEU CYS GLU SER SER ASP VAL PHE SEQRES 29 D 434 GLY ARG ASP ARG GLU LEU ASP LYS VAL GLU VAL GLY ASP SEQRES 30 D 434 VAL LEU ALA ILE PHE ASP VAL GLY ALA TYR GLY ILE SER SEQRES 31 D 434 MET ALA ASN ASN TYR ASN ALA ARG GLY ARG PRO ARG MET SEQRES 32 D 434 VAL LEU THR SER LYS LYS GLY VAL PHE LEU ILE ARG GLU SEQRES 33 D 434 ARG GLU THR TYR ALA ASP LEU ILE ALA LYS ASP ILE VAL SEQRES 34 D 434 PRO PRO HIS LEU LEU HET PLP A1501 16 HET PLP B1502 16 HET MG C1607 1 HET PLP C1503 16 HET LYS D1601 10 HET LYS D1602 10 HET LYS D1603 10 HET LYS D1604 10 HET LYS D1605 10 HET LYS D1606 10 HET PLP D1504 16 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM LYS LYSINE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 5 PLP 4(C8 H10 N O6 P) FORMUL 7 MG MG 2+ FORMUL 9 LYS 6(C6 H15 N2 O2 1+) FORMUL 16 HOH *1423(H2 O) HELIX 1 1 ALA A 35 GLY A 43 1 9 HELIX 2 2 GLU A 51 GLY A 73 1 23 HELIX 3 3 LYS A 83 ASN A 85 5 3 HELIX 4 4 ASN A 87 LEU A 97 1 11 HELIX 5 5 SER A 105 SER A 115 1 11 HELIX 6 6 PRO A 118 LYS A 120 5 3 HELIX 7 7 THR A 130 ALA A 140 1 11 HELIX 8 8 SER A 149 GLY A 164 1 16 HELIX 9 9 HIS A 182 ASN A 192 1 11 HELIX 10 10 GLY A 201 MET A 213 1 13 HELIX 11 11 ILE A 232 GLU A 252 1 21 HELIX 12 12 THR A 277 LYS A 291 1 15 HELIX 13 13 GLY A 306 ALA A 311 1 6 HELIX 14 14 MET A 342 GLU A 348 1 7 HELIX 15 15 GLY A 402 ALA A 406 5 5 HELIX 16 16 THR A 433 ILE A 438 1 6 HELIX 17 17 PRO A 444 LEU A 448 5 5 HELIX 18 18 ALA B 35 GLY B 43 1 9 HELIX 19 19 GLU B 51 PHE B 65 1 15 HELIX 20 20 LYS B 66 GLY B 73 1 8 HELIX 21 21 LYS B 83 ASN B 85 5 3 HELIX 22 22 ASN B 87 GLY B 98 1 12 HELIX 23 23 SER B 105 SER B 115 1 11 HELIX 24 24 PRO B 118 LYS B 120 5 3 HELIX 25 25 THR B 130 ALA B 140 1 11 HELIX 26 26 SER B 149 GLY B 164 1 16 HELIX 27 27 HIS B 182 ASN B 192 1 11 HELIX 28 28 GLY B 201 MET B 213 1 13 HELIX 29 29 ILE B 232 GLU B 252 1 21 HELIX 30 30 THR B 277 LYS B 291 1 15 HELIX 31 31 GLY B 306 ALA B 311 1 6 HELIX 32 32 MET B 342 GLU B 348 1 7 HELIX 33 33 GLY B 402 ALA B 406 5 5 HELIX 34 34 THR B 433 ILE B 438 1 6 HELIX 35 35 PRO B 444 LEU B 448 5 5 HELIX 36 36 ALA C 35 GLY C 43 1 9 HELIX 37 37 GLU C 51 GLY C 73 1 23 HELIX 38 38 LYS C 83 ASN C 85 5 3 HELIX 39 39 ASN C 87 LEU C 97 1 11 HELIX 40 40 SER C 105 SER C 115 1 11 HELIX 41 41 PRO C 118 LYS C 120 5 3 HELIX 42 42 THR C 130 ALA C 140 1 11 HELIX 43 43 SER C 149 GLY C 164 1 16 HELIX 44 44 HIS C 182 ASN C 192 1 11 HELIX 45 45 GLY C 201 MET C 213 1 13 HELIX 46 46 ILE C 232 GLU C 252 1 21 HELIX 47 47 THR C 277 LYS C 291 1 15 HELIX 48 48 GLY C 306 ALA C 311 1 6 HELIX 49 49 MET C 342 GLU C 348 1 7 HELIX 50 50 GLY C 402 ALA C 406 5 5 HELIX 51 51 THR C 433 ILE C 438 1 6 HELIX 52 52 PRO C 444 LEU C 448 5 5 HELIX 53 53 ALA D 35 GLY D 43 1 9 HELIX 54 54 GLU D 51 GLY D 73 1 23 HELIX 55 55 LYS D 83 ASN D 85 5 3 HELIX 56 56 ASN D 87 LEU D 97 1 11 HELIX 57 57 SER D 105 SER D 115 1 11 HELIX 58 58 PRO D 118 LYS D 120 5 3 HELIX 59 59 THR D 130 ASN D 141 1 12 HELIX 60 60 SER D 149 GLY D 164 1 16 HELIX 61 61 HIS D 182 ASN D 192 1 11 HELIX 62 62 GLY D 201 MET D 213 1 13 HELIX 63 63 ILE D 232 GLU D 252 1 21 HELIX 64 64 THR D 277 LYS D 291 1 15 HELIX 65 65 GLY D 306 ALA D 311 1 6 HELIX 66 66 MET D 342 GLU D 348 1 7 HELIX 67 67 GLY D 402 ALA D 406 5 5 HELIX 68 68 THR D 433 ILE D 438 1 6 HELIX 69 69 PRO D 444 LEU D 448 5 5 SHEET 1 A 3 VAL A 21 LYS A 24 0 SHEET 2 A 3 ARG A 27 ILE A 30 -1 O PHE A 29 N GLU A 22 SHEET 3 A 3 TYR A 33 ASP A 34 -1 O TYR A 33 N ILE A 30 SHEET 1 B 6 ILE A 353 ASN A 355 0 SHEET 2 B 6 VAL A 392 PHE A 396 -1 O ALA A 394 N ILE A 354 SHEET 3 B 6 GLY A 314 GLU A 325 -1 N GLY A 318 O LEU A 393 SHEET 4 B 6 LYS A 330 ILE A 334 -1 O TRP A 331 N LYS A 324 SHEET 5 B 6 LYS A 362 ALA A 368 1 O ALA A 368 N ILE A 334 SHEET 6 B 6 VAL A 377 ASP A 385 -1 O ARG A 382 N VAL A 365 SHEET 1 C 6 ILE A 353 ASN A 355 0 SHEET 2 C 6 VAL A 392 PHE A 396 -1 O ALA A 394 N ILE A 354 SHEET 3 C 6 GLY A 314 GLU A 325 -1 N GLY A 318 O LEU A 393 SHEET 4 C 6 LEU A 46 SER A 50 -1 N LEU A 46 O LEU A 317 SHEET 5 C 6 ARG A 416 SER A 421 1 O VAL A 418 N MET A 49 SHEET 6 C 6 GLY A 424 ARG A 429 -1 O PHE A 426 N LEU A 419 SHEET 1 D10 LEU A 196 ASP A 197 0 SHEET 2 D10 ALA A 167 ASN A 174 1 N ASN A 174 O LEU A 196 SHEET 3 D10 VAL A 216 HIS A 222 1 O ASN A 217 N VAL A 169 SHEET 4 D10 ASP A 258 ASN A 260 1 O ASN A 260 N VAL A 221 SHEET 5 D10 ASN A 300 LEU A 303 1 O ILE A 302 N VAL A 259 SHEET 6 D10 PHE A 76 ALA A 81 1 N ALA A 79 O LEU A 303 SHEET 7 D10 GLY A 100 VAL A 103 1 O GLY A 100 N VAL A 78 SHEET 8 D10 ILE A 122 PHE A 124 1 O VAL A 123 N VAL A 103 SHEET 9 D10 ALA A 144 VAL A 147 1 O ASN A 146 N PHE A 124 SHEET 10 D10 ALA A 167 ASN A 174 1 O ALA A 170 N PHE A 145 SHEET 1 E 3 VAL B 21 LYS B 24 0 SHEET 2 E 3 ARG B 27 ILE B 30 -1 O ARG B 27 N LYS B 24 SHEET 3 E 3 TYR B 33 ASP B 34 -1 O TYR B 33 N ILE B 30 SHEET 1 F 6 ILE B 353 ASN B 355 0 SHEET 2 F 6 VAL B 392 ILE B 395 -1 O ALA B 394 N ILE B 354 SHEET 3 F 6 GLY B 314 GLU B 325 -1 N GLY B 318 O LEU B 393 SHEET 4 F 6 LYS B 330 ILE B 334 -1 O TRP B 331 N LYS B 324 SHEET 5 F 6 LYS B 362 ALA B 368 1 O SER B 366 N VAL B 332 SHEET 6 F 6 VAL B 377 ASP B 385 -1 O ARG B 382 N VAL B 365 SHEET 1 G 6 ILE B 353 ASN B 355 0 SHEET 2 G 6 VAL B 392 ILE B 395 -1 O ALA B 394 N ILE B 354 SHEET 3 G 6 GLY B 314 GLU B 325 -1 N GLY B 318 O LEU B 393 SHEET 4 G 6 LEU B 46 SER B 50 -1 N LEU B 46 O LEU B 317 SHEET 5 G 6 ARG B 416 SER B 421 1 O VAL B 418 N MET B 49 SHEET 6 G 6 GLY B 424 ARG B 429 -1 O PHE B 426 N LEU B 419 SHEET 1 H10 LEU B 196 ASP B 197 0 SHEET 2 H10 ALA B 167 ASN B 174 1 N ASN B 174 O LEU B 196 SHEET 3 H10 VAL B 216 HIS B 222 1 O ASN B 217 N VAL B 169 SHEET 4 H10 ASP B 258 ASN B 260 1 O ASN B 260 N VAL B 221 SHEET 5 H10 ASN B 300 LEU B 303 1 O ILE B 302 N VAL B 259 SHEET 6 H10 PHE B 76 ALA B 81 1 N ALA B 79 O LEU B 303 SHEET 7 H10 GLY B 100 VAL B 103 1 O GLY B 100 N VAL B 78 SHEET 8 H10 ILE B 122 PHE B 124 1 O VAL B 123 N VAL B 103 SHEET 9 H10 ALA B 144 VAL B 147 1 O ASN B 146 N PHE B 124 SHEET 10 H10 ALA B 167 ASN B 174 1 O ALA B 170 N PHE B 145 SHEET 1 I 3 VAL C 21 LYS C 24 0 SHEET 2 I 3 ARG C 27 ILE C 30 -1 O PHE C 29 N GLU C 22 SHEET 3 I 3 TYR C 33 ASP C 34 -1 O TYR C 33 N ILE C 30 SHEET 1 J 6 ILE C 353 ASN C 355 0 SHEET 2 J 6 VAL C 392 PHE C 396 -1 O ALA C 394 N ILE C 354 SHEET 3 J 6 GLY C 314 GLU C 325 -1 N GLY C 318 O LEU C 393 SHEET 4 J 6 LYS C 330 ILE C 334 -1 O TRP C 331 N LYS C 324 SHEET 5 J 6 LYS C 362 ALA C 368 1 O ALA C 368 N ILE C 334 SHEET 6 J 6 VAL C 377 ASP C 385 -1 O ARG C 382 N VAL C 365 SHEET 1 K 6 ILE C 353 ASN C 355 0 SHEET 2 K 6 VAL C 392 PHE C 396 -1 O ALA C 394 N ILE C 354 SHEET 3 K 6 GLY C 314 GLU C 325 -1 N GLY C 318 O LEU C 393 SHEET 4 K 6 LEU C 46 SER C 50 -1 N LEU C 46 O LEU C 317 SHEET 5 K 6 ARG C 416 SER C 421 1 O VAL C 418 N MET C 49 SHEET 6 K 6 GLY C 424 ARG C 429 -1 O PHE C 426 N LEU C 419 SHEET 1 L10 LEU C 196 ASP C 197 0 SHEET 2 L10 ALA C 167 ASN C 174 1 N ASN C 174 O LEU C 196 SHEET 3 L10 VAL C 216 HIS C 222 1 O ASN C 217 N VAL C 169 SHEET 4 L10 ASP C 258 ASN C 260 1 O ASN C 260 N VAL C 221 SHEET 5 L10 ASN C 300 LEU C 303 1 O ILE C 302 N VAL C 259 SHEET 6 L10 PHE C 76 ALA C 81 1 N ALA C 79 O LEU C 303 SHEET 7 L10 GLY C 100 VAL C 103 1 O GLY C 100 N VAL C 78 SHEET 8 L10 ILE C 122 PHE C 124 1 O VAL C 123 N VAL C 103 SHEET 9 L10 ALA C 144 VAL C 147 1 O ASN C 146 N PHE C 124 SHEET 10 L10 ALA C 167 ASN C 174 1 O ALA C 170 N PHE C 145 SHEET 1 M 3 VAL D 21 LYS D 24 0 SHEET 2 M 3 ARG D 27 ILE D 30 -1 O PHE D 29 N GLU D 22 SHEET 3 M 3 TYR D 33 ASP D 34 -1 O TYR D 33 N ILE D 30 SHEET 1 N 6 ILE D 353 ASN D 355 0 SHEET 2 N 6 VAL D 392 PHE D 396 -1 O ALA D 394 N ILE D 354 SHEET 3 N 6 GLY D 314 GLU D 325 -1 N GLY D 318 O LEU D 393 SHEET 4 N 6 LYS D 330 ILE D 334 -1 O MET D 333 N HIS D 322 SHEET 5 N 6 LYS D 362 ALA D 368 1 O ALA D 368 N ILE D 334 SHEET 6 N 6 VAL D 377 ASP D 385 -1 O ARG D 382 N VAL D 365 SHEET 1 O 6 ILE D 353 ASN D 355 0 SHEET 2 O 6 VAL D 392 PHE D 396 -1 O ALA D 394 N ILE D 354 SHEET 3 O 6 GLY D 314 GLU D 325 -1 N GLY D 318 O LEU D 393 SHEET 4 O 6 LEU D 46 SER D 50 -1 N VAL D 48 O TYR D 315 SHEET 5 O 6 ARG D 416 SER D 421 1 O VAL D 418 N MET D 49 SHEET 6 O 6 GLY D 424 ARG D 429 -1 O PHE D 426 N LEU D 419 SHEET 1 P10 LEU D 196 ASP D 197 0 SHEET 2 P10 ALA D 167 ASN D 174 1 N ARG D 172 O LEU D 196 SHEET 3 P10 VAL D 216 HIS D 222 1 O ASN D 217 N VAL D 169 SHEET 4 P10 ASP D 258 ASN D 260 1 O ASN D 260 N VAL D 221 SHEET 5 P10 ASN D 300 LEU D 303 1 O ILE D 302 N VAL D 259 SHEET 6 P10 PHE D 76 ALA D 81 1 N ALA D 79 O LEU D 303 SHEET 7 P10 GLY D 100 VAL D 103 1 O GLY D 100 N VAL D 78 SHEET 8 P10 ILE D 122 PHE D 124 1 O VAL D 123 N ALA D 101 SHEET 9 P10 ALA D 144 VAL D 147 1 O ASN D 146 N PHE D 124 SHEET 10 P10 ALA D 167 ASN D 174 1 O ALA D 170 N PHE D 145 LINK O4A PLP C1503 NZ LYS D1603 1555 1555 2.05 LINK MG MG C1607 O HOH C1688 1555 1555 2.06 LINK MG MG C1607 O HOH C1711 1555 1555 2.02 LINK MG MG C1607 O HOH C1728 1555 1555 2.10 LINK MG MG C1607 O HOH C1729 1555 1555 2.10 LINK MG MG C1607 O HOH C1842 1555 1555 2.12 CISPEP 1 THR A 44 PRO A 45 0 -2.79 CISPEP 2 THR B 44 PRO B 45 0 0.90 CISPEP 3 THR C 44 PRO C 45 0 -2.75 CISPEP 4 THR D 44 PRO D 45 0 0.96 SITE 1 AC1 5 HOH C1688 HOH C1711 HOH C1728 HOH C1729 SITE 2 AC1 5 HOH C1842 SITE 1 AC2 11 SER A 227 ARG A 307 ARG A 343 TYR A 347 SITE 2 AC2 11 TYR A 401 PLP A1501 GLU B 373 TYR B 409 SITE 3 AC2 11 HOH D1764 HOH D1876 HOH D1937 SITE 1 AC3 11 CYS A 372 GLU A 373 TYR A 409 ARG B 307 SITE 2 AC3 11 ARG B 343 TYR B 347 TYR B 401 MET B 405 SITE 3 AC3 11 PLP B1502 HOH B1782 HOH D1815 SITE 1 AC4 10 SER C 227 ARG C 307 ARG C 343 TYR C 347 SITE 2 AC4 10 TYR C 401 MET C 405 PLP C1503 CYS D 372 SITE 3 AC4 10 GLU D 373 TYR D 409 SITE 1 AC5 8 ARG C 172 ASN C 192 PHE C 194 HIS C 224 SITE 2 AC5 8 ILE C 225 SER C 227 HOH D1966 HOH D1984 SITE 1 AC6 11 GLU C 373 TYR C 409 SER D 227 ARG D 307 SITE 2 AC6 11 ARG D 343 TYR D 347 TYR D 401 MET D 405 SITE 3 AC6 11 PLP D1504 LYS D1606 HOH D1850 SITE 1 AC7 12 SER C 374 ARG D 172 ASN D 192 PHE D 194 SITE 2 AC7 12 HIS D 224 ILE D 225 GLY D 226 SER D 227 SITE 3 AC7 12 LYS D1605 HOH D1897 HOH D1955 HOH D1965 SITE 1 AC8 16 ALA A 81 LYS A 83 ASP A 102 ASN A 125 SITE 2 AC8 16 HIS A 224 SER A 227 GLY A 264 GLU A 304 SITE 3 AC8 16 GLY A 306 ARG A 307 TYR A 401 HOH A1505 SITE 4 AC8 16 HOH A1525 HOH A1538 CYS B 372 LYS D1601 SITE 1 AC9 17 CYS A 372 ALA B 81 LYS B 83 ASP B 102 SITE 2 AC9 17 ASN B 125 HIS B 224 SER B 227 GLY B 264 SITE 3 AC9 17 GLU B 304 GLY B 306 ARG B 307 TYR B 401 SITE 4 AC9 17 HOH B1512 HOH B1526 HOH B1553 HOH B1785 SITE 5 AC9 17 LYS D1602 SITE 1 BC1 16 ALA C 81 LYS C 83 ASP C 102 HIS C 224 SITE 2 BC1 16 SER C 227 GLY C 264 GLU C 304 GLY C 306 SITE 3 BC1 16 ARG C 307 TYR C 401 HOH C1609 HOH C1630 SITE 4 BC1 16 HOH C1641 HOH C1716 CYS D 372 LYS D1603 SITE 1 BC2 17 CYS C 372 ALA D 81 LYS D 83 ASP D 102 SITE 2 BC2 17 ASN D 125 HIS D 224 SER D 227 GLY D 264 SITE 3 BC2 17 GLU D 304 GLY D 306 ARG D 307 TYR D 401 SITE 4 BC2 17 LYS D1605 HOH D1627 HOH D1632 HOH D1645 SITE 5 BC2 17 HOH D1731 CRYST1 70.242 147.070 89.389 90.00 97.25 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014236 0.000000 0.001811 0.00000 SCALE2 0.000000 0.006799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011277 0.00000