HEADER COMPLEX(GTPASE ACTIVATN/PROTO-ONCOGENE) 29-JUL-97 1TX4 TITLE RHO/RHOGAP/GDP(DOT)ALF4 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: P50-RHOGAP; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GTPASE-ACTIVATING PROTEIN RHOGAP; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSFORMING PROTEIN RHOA; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2T; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS COMPLEX (GTPASE ACTIVATION-PROTO-ONCOGENE), GTPASE, TRANSITION STATE, KEYWDS 2 GAP, COMPLEX(GTPASE ACTIVATN-PROTO-ONCOGENE) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.RITTINGER,P.A.WALKER,S.J.SMERDON,S.J.GAMBLIN REVDAT 5 22-MAY-24 1TX4 1 REMARK REVDAT 4 09-AUG-23 1TX4 1 REMARK REVDAT 3 21-DEC-22 1TX4 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1TX4 1 VERSN REVDAT 1 16-SEP-98 1TX4 0 JRNL AUTH K.RITTINGER,P.A.WALKER,J.F.ECCLESTON,S.J.SMERDON,S.J.GAMBLIN JRNL TITL STRUCTURE AT 1.65 A OF RHOA AND ITS GTPASE-ACTIVATING JRNL TITL 2 PROTEIN IN COMPLEX WITH A TRANSITION-STATE ANALOGUE. JRNL REF NATURE V. 389 758 1997 JRNL REFN ISSN 0028-0836 JRNL PMID 9338791 JRNL DOI 10.1038/39651 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 3 NUMBER OF REFLECTIONS : 37875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2957 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 497 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUN-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLAGE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42992 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 6.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1AM4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 18% PEG REMARK 280 2000 MME 100MM MES PH6.0 10MM MGCL2, 3MM DTT, 3MM NAN3, 114MM REMARK 280 AMMONIUM SULFATE 400UM PROTEIN COMPLEX WITH 1MM ALCL3 AND 10MM REMARK 280 NAF. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 37 REMARK 465 PRO A 38 REMARK 465 PRO B 31 REMARK 465 GLU B 32 REMARK 465 VAL B 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 703 O HOH B 822 2.06 REMARK 500 O HOH A 249 O HOH A 265 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 319 O HOH B 725 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 6 C LYS B 7 N 0.188 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 50 CB - CG - CD ANGL. DEV. = 18.6 DEGREES REMARK 500 THR A 79 N - CA - CB ANGL. DEV. = -17.0 DEGREES REMARK 500 THR A 79 OG1 - CB - CG2 ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG A 94 CD - NE - CZ ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 GLU A 130 OE1 - CD - OE2 ANGL. DEV. = 9.2 DEGREES REMARK 500 PHE A 144 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 152 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TYR A 168 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 208 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 PHE A 234 CA - C - O ANGL. DEV. = -13.3 DEGREES REMARK 500 VAL B 9 CA - CB - CG1 ANGL. DEV. = 11.6 DEGREES REMARK 500 ASP B 49 CB - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 ASP B 65 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 67 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 67 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 90 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 122 CD - NE - CZ ANGL. DEV. = 44.6 DEGREES REMARK 500 GLU B 137 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 84 -10.50 80.65 REMARK 500 THR A 134 153.79 78.94 REMARK 500 VAL B 38 -90.40 -93.99 REMARK 500 ASP B 49 -107.44 61.19 REMARK 500 LYS B 98 -64.10 -131.22 REMARK 500 LYS B 164 -5.18 82.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 681 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 19 OG1 REMARK 620 2 THR B 37 OG1 83.3 REMARK 620 3 GDP B 680 O2B 93.4 173.5 REMARK 620 4 ALF B 682 F2 167.1 84.1 98.8 REMARK 620 5 ALF B 682 AL 166.4 106.8 77.3 25.7 REMARK 620 6 HOH B 683 O 90.5 86.0 88.4 85.8 99.1 REMARK 620 7 HOH B 685 O 90.4 90.2 95.4 92.5 80.7 176.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ALF B 682 AL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP B 680 O3B REMARK 620 2 ALF B 682 F1 93.5 REMARK 620 3 ALF B 682 F2 94.4 171.9 REMARK 620 4 ALF B 682 F3 88.3 94.0 87.8 REMARK 620 5 ALF B 682 F4 94.7 85.5 92.3 177.0 REMARK 620 6 HOH B 684 O 173.0 92.0 80.2 87.1 89.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: TS REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: TRANSITION STATE ANALOG GDP.ALF4. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 681 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF B 682 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 680 DBREF 1TX4 A 37 234 UNP Q07960 RHG01_HUMAN 234 431 DBREF 1TX4 B 3 179 UNP P61586 RHOA_HUMAN 3 179 SEQADV 1TX4 ALA A 113 UNP Q07960 GLU 310 CONFLICT SEQADV 1TX4 ASN B 25 UNP P61586 PHE 25 ENGINEERED MUTATION SEQRES 1 A 198 ARG PRO PRO LEU PRO ASN GLN GLN PHE GLY VAL SER LEU SEQRES 2 A 198 GLN HIS LEU GLN GLU LYS ASN PRO GLU GLN GLU PRO ILE SEQRES 3 A 198 PRO ILE VAL LEU ARG GLU THR VAL ALA TYR LEU GLN ALA SEQRES 4 A 198 HIS ALA LEU THR THR GLU GLY ILE PHE ARG ARG SER ALA SEQRES 5 A 198 ASN THR GLN VAL VAL ARG GLU VAL GLN GLN LYS TYR ASN SEQRES 6 A 198 MET GLY LEU PRO VAL ASP PHE ASP GLN TYR ASN ALA LEU SEQRES 7 A 198 HIS LEU PRO ALA VAL ILE LEU LYS THR PHE LEU ARG GLU SEQRES 8 A 198 LEU PRO GLU PRO LEU LEU THR PHE ASP LEU TYR PRO HIS SEQRES 9 A 198 VAL VAL GLY PHE LEU ASN ILE ASP GLU SER GLN ARG VAL SEQRES 10 A 198 PRO ALA THR LEU GLN VAL LEU GLN THR LEU PRO GLU GLU SEQRES 11 A 198 ASN TYR GLN VAL LEU ARG PHE LEU THR ALA PHE LEU VAL SEQRES 12 A 198 GLN ILE SER ALA HIS SER ASP GLN ASN LYS MET THR ASN SEQRES 13 A 198 THR ASN LEU ALA VAL VAL PHE GLY PRO ASN LEU LEU TRP SEQRES 14 A 198 ALA LYS ASP ALA ALA ILE THR LEU LYS ALA ILE ASN PRO SEQRES 15 A 198 ILE ASN THR PHE THR LYS PHE LEU LEU ASP HIS GLN GLY SEQRES 16 A 198 GLU LEU PHE SEQRES 1 B 177 ALA ILE ARG LYS LYS LEU VAL ILE VAL GLY ASP GLY ALA SEQRES 2 B 177 CYS GLY LYS THR CYS LEU LEU ILE VAL ASN SER LYS ASP SEQRES 3 B 177 GLN PHE PRO GLU VAL TYR VAL PRO THR VAL PHE GLU ASN SEQRES 4 B 177 TYR VAL ALA ASP ILE GLU VAL ASP GLY LYS GLN VAL GLU SEQRES 5 B 177 LEU ALA LEU TRP ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 B 177 ARG LEU ARG PRO LEU SER TYR PRO ASP THR ASP VAL ILE SEQRES 7 B 177 LEU MET CYS PHE SER ILE ASP SER PRO ASP SER LEU GLU SEQRES 8 B 177 ASN ILE PRO GLU LYS TRP THR PRO GLU VAL LYS HIS PHE SEQRES 9 B 177 CYS PRO ASN VAL PRO ILE ILE LEU VAL GLY ASN LYS LYS SEQRES 10 B 177 ASP LEU ARG ASN ASP GLU HIS THR ARG ARG GLU LEU ALA SEQRES 11 B 177 LYS MET LYS GLN GLU PRO VAL LYS PRO GLU GLU GLY ARG SEQRES 12 B 177 ASP MET ALA ASN ARG ILE GLY ALA PHE GLY TYR MET GLU SEQRES 13 B 177 CYS SER ALA LYS THR LYS ASP GLY VAL ARG GLU VAL PHE SEQRES 14 B 177 GLU MET ALA THR ARG ALA ALA LEU HET MG B 681 1 HET ALF B 682 5 HET GDP B 680 28 HETNAM MG MAGNESIUM ION HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 MG MG 2+ FORMUL 4 ALF AL F4 1- FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 HOH *497(H2 O) HELIX 1 1 LEU A 49 LYS A 55 1 7 HELIX 2 2 ILE A 64 HIS A 76 1 13 HELIX 3 3 THR A 90 ASN A 101 1 12 HELIX 4 4 PHE A 108 GLN A 110 5 3 HELIX 5 5 HIS A 115 GLU A 127 1 13 HELIX 6 6 PHE A 135 VAL A 142 5 8 HELIX 7 7 PHE A 144 ASN A 146 5 3 HELIX 8 8 GLU A 149 THR A 162 5 14 HELIX 9 9 GLU A 165 ASN A 188 1 24 HELIX 10 10 ASN A 192 LEU A 203 1 12 HELIX 11 11 ALA A 209 LYS A 214 1 6 HELIX 12 12 ILE A 216 ASP A 228 1 13 HELIX 13 13 LYS B 18 LYS B 27 1 10 HELIX 14 14 GLU B 64 SER B 73 5 10 HELIX 15 15 PRO B 89 GLU B 97 1 9 HELIX 16 16 TRP B 99 PHE B 106 1 8 HELIX 17 17 LYS B 119 LEU B 121 5 3 HELIX 18 18 GLU B 125 MET B 134 1 10 HELIX 19 19 PRO B 141 ILE B 151 1 11 HELIX 20 20 VAL B 167 ALA B 177 1 11 SHEET 1 A 6 GLY B 155 GLU B 158 0 SHEET 2 A 6 PRO B 111 ASN B 117 1 N LEU B 114 O GLY B 155 SHEET 3 A 6 VAL B 79 SER B 85 1 N ILE B 80 O PRO B 111 SHEET 4 A 6 ILE B 4 GLY B 12 1 N VAL B 9 O VAL B 79 SHEET 5 A 6 LYS B 51 THR B 60 1 N GLU B 54 O ILE B 4 SHEET 6 A 6 PHE B 39 VAL B 48 -1 N VAL B 48 O LYS B 51 LINK OG1 THR B 19 MG MG B 681 1555 1555 2.27 LINK OG1 THR B 37 MG MG B 681 1555 1555 2.32 LINK O2B GDP B 680 MG MG B 681 1555 1555 2.20 LINK O3B GDP B 680 AL ALF B 682 1555 1555 1.92 LINK MG MG B 681 F2 ALF B 682 1555 1555 2.30 LINK MG MG B 681 AL ALF B 682 1555 1555 3.53 LINK MG MG B 681 O HOH B 683 1555 1555 2.10 LINK MG MG B 681 O HOH B 685 1555 1555 2.13 LINK AL ALF B 682 O HOH B 684 1555 1555 1.87 SITE 1 TS 1 GDP B 680 SITE 1 AC1 6 THR B 19 THR B 37 GDP B 680 ALF B 682 SITE 2 AC1 6 HOH B 683 HOH B 685 SITE 1 AC2 15 ARG A 85 GLY B 14 ALA B 15 LYS B 18 SITE 2 AC2 15 PRO B 36 THR B 37 THR B 60 ALA B 61 SITE 3 AC2 15 GLY B 62 GLN B 63 GDP B 680 MG B 681 SITE 4 AC2 15 HOH B 683 HOH B 684 HOH B 685 SITE 1 AC3 27 ARG A 85 ALA B 15 CYS B 16 GLY B 17 SITE 2 AC3 27 LYS B 18 THR B 19 CYS B 20 PHE B 30 SITE 3 AC3 27 TYR B 34 LYS B 118 ASP B 120 LEU B 121 SITE 4 AC3 27 SER B 160 ALA B 161 LYS B 162 MG B 681 SITE 5 AC3 27 ALF B 682 HOH B 683 HOH B 689 HOH B 714 SITE 6 AC3 27 HOH B 718 HOH B 740 HOH B 747 HOH B 764 SITE 7 AC3 27 HOH B 777 HOH B 788 HOH B 806 CRYST1 66.500 72.000 91.300 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015038 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010953 0.00000