HEADER OXIDOREDUCTASE 05-JUL-04 1TXG TITLE STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGENASE FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(P)+]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NADP, H-DEPENDENT GLYCEROL-3-PHOSPHATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.94; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEGPD1 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SAKASEGAWA,C.H.HAGEMEIER,R.K.THAUER,L.O.ESSEN,S.SHIMA REVDAT 5 29-MAY-24 1TXG 1 REMARK REVDAT 4 01-MAR-23 1TXG 1 REMARK LINK REVDAT 3 13-JUL-11 1TXG 1 VERSN REVDAT 2 24-FEB-09 1TXG 1 VERSN REVDAT 1 07-DEC-04 1TXG 0 JRNL AUTH S.SAKASEGAWA,C.H.HAGEMEIER,R.K.THAUER,L.O.ESSEN,S.SHIMA JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE GPSA GENE PRODUCT JRNL TITL 2 OF ARCHAEOGLOBUS FULGIDUS: A GLYCEROL-3-PHOSPHATE JRNL TITL 3 DEHYDROGENASE WITH AN UNUSUAL NADP+ PREFERENCE JRNL REF PROTEIN SCI. V. 13 3161 2004 JRNL REFN ISSN 0961-8368 JRNL PMID 15557260 JRNL DOI 10.1110/PS.04980304 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 63641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3438 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4391 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 241 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5172 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 753 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.82000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.995 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5314 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5052 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7180 ; 1.641 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11714 ; 0.894 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 668 ; 5.209 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 836 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5804 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1042 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1175 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6039 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3096 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 537 ; 0.195 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.254 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.366 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3310 ; 0.990 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5340 ; 1.844 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2004 ; 3.140 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1840 ; 4.958 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 335 6 REMARK 3 1 B 1 B 335 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 5118 ; 0.52 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 5118 ; 2.72 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63641 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 17.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, DIOXANE, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.79300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE DIMER IN THE ASYMMETRIC UNIT IS THE BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1112 O HOH A 1391 1.78 REMARK 500 OE1 GLU B 119 N NH4 B 1011 1.78 REMARK 500 O HOH A 1024 O HOH A 1391 1.84 REMARK 500 OE1 GLU A 130 O HOH A 1093 1.84 REMARK 500 N NH4 B 1011 O HOH B 1114 1.98 REMARK 500 OD1 ASN A 193 O HOH A 1381 2.00 REMARK 500 O HOH B 1381 O HOH B 1382 2.05 REMARK 500 O HOH B 1183 O HOH B 1376 2.07 REMARK 500 ND2 ASN A 226 O HOH A 1275 2.08 REMARK 500 N NH4 B 1011 O HOH B 1381 2.10 REMARK 500 O PHE A 243 CD1 PHE A 248 2.13 REMARK 500 O HOH A 1227 O HOH A 1297 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1168 O HOH A 1202 2757 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B 228 SD MET B 228 CE -0.481 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 82 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 203 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 238 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 PHE A 248 CB - CA - C ANGL. DEV. = -14.4 DEGREES REMARK 500 ASP B 82 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 111 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 181 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 250 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 299 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 299 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 96 -120.52 -112.09 REMARK 500 ALA A 139 48.47 -144.93 REMARK 500 LYS B 96 -93.83 -120.50 REMARK 500 ALA B 139 46.97 -148.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 B 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1010 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EVY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA GLYCEROL-3- PHOSPHATE REMARK 900 DEHYDROGENASE DBREF 1TXG A 1 335 UNP O29390 GPDA_ARCFU 1 335 DBREF 1TXG B 1 335 UNP O29390 GPDA_ARCFU 1 335 SEQRES 1 A 335 MET ILE VAL SER ILE LEU GLY ALA GLY ALA MET GLY SER SEQRES 2 A 335 ALA LEU SER VAL PRO LEU VAL ASP ASN GLY ASN GLU VAL SEQRES 3 A 335 ARG ILE TRP GLY THR GLU PHE ASP THR GLU ILE LEU LYS SEQRES 4 A 335 SER ILE SER ALA GLY ARG GLU HIS PRO ARG LEU GLY VAL SEQRES 5 A 335 LYS LEU ASN GLY VAL GLU ILE PHE TRP PRO GLU GLN LEU SEQRES 6 A 335 GLU LYS CYS LEU GLU ASN ALA GLU VAL VAL LEU LEU GLY SEQRES 7 A 335 VAL SER THR ASP GLY VAL LEU PRO VAL MET SER ARG ILE SEQRES 8 A 335 LEU PRO TYR LEU LYS ASP GLN TYR ILE VAL LEU ILE SER SEQRES 9 A 335 LYS GLY LEU ILE ASP PHE ASP ASN SER VAL LEU THR VAL SEQRES 10 A 335 PRO GLU ALA VAL TRP ARG LEU LYS HIS ASP LEU ARG GLU SEQRES 11 A 335 ARG THR VAL ALA ILE THR GLY PRO ALA ILE ALA ARG GLU SEQRES 12 A 335 VAL ALA LYS ARG MET PRO THR THR VAL VAL PHE SER SER SEQRES 13 A 335 PRO SER GLU SER SER ALA ASN LYS MET LYS GLU ILE PHE SEQRES 14 A 335 GLU THR GLU TYR PHE GLY VAL GLU VAL THR THR ASP ILE SEQRES 15 A 335 ILE GLY THR GLU ILE THR SER ALA LEU LYS ASN VAL TYR SEQRES 16 A 335 SER ILE ALA ILE ALA TRP ILE ARG GLY TYR GLU SER ARG SEQRES 17 A 335 LYS ASN VAL GLU MET SER ASN ALA LYS GLY VAL ILE ALA SEQRES 18 A 335 THR ARG ALA ILE ASN GLU MET ALA GLU LEU ILE GLU ILE SEQRES 19 A 335 LEU GLY GLY ASP ARG GLU THR ALA PHE GLY LEU SER GLY SEQRES 20 A 335 PHE GLY ASP LEU ILE ALA THR PHE ARG GLY GLY ARG ASN SEQRES 21 A 335 GLY MET LEU GLY GLU LEU LEU GLY LYS GLY LEU SER ILE SEQRES 22 A 335 ASP GLU ALA MET GLU GLU LEU GLU ARG ARG GLY VAL GLY SEQRES 23 A 335 VAL VAL GLU GLY TYR LYS THR ALA GLU LYS ALA TYR ARG SEQRES 24 A 335 LEU SER SER LYS ILE ASN ALA ASP THR LYS LEU LEU ASP SEQRES 25 A 335 SER ILE TYR ARG VAL LEU TYR GLU GLY LEU LYS VAL GLU SEQRES 26 A 335 GLU VAL LEU PHE GLU LEU ALA THR PHE LYS SEQRES 1 B 335 MET ILE VAL SER ILE LEU GLY ALA GLY ALA MET GLY SER SEQRES 2 B 335 ALA LEU SER VAL PRO LEU VAL ASP ASN GLY ASN GLU VAL SEQRES 3 B 335 ARG ILE TRP GLY THR GLU PHE ASP THR GLU ILE LEU LYS SEQRES 4 B 335 SER ILE SER ALA GLY ARG GLU HIS PRO ARG LEU GLY VAL SEQRES 5 B 335 LYS LEU ASN GLY VAL GLU ILE PHE TRP PRO GLU GLN LEU SEQRES 6 B 335 GLU LYS CYS LEU GLU ASN ALA GLU VAL VAL LEU LEU GLY SEQRES 7 B 335 VAL SER THR ASP GLY VAL LEU PRO VAL MET SER ARG ILE SEQRES 8 B 335 LEU PRO TYR LEU LYS ASP GLN TYR ILE VAL LEU ILE SER SEQRES 9 B 335 LYS GLY LEU ILE ASP PHE ASP ASN SER VAL LEU THR VAL SEQRES 10 B 335 PRO GLU ALA VAL TRP ARG LEU LYS HIS ASP LEU ARG GLU SEQRES 11 B 335 ARG THR VAL ALA ILE THR GLY PRO ALA ILE ALA ARG GLU SEQRES 12 B 335 VAL ALA LYS ARG MET PRO THR THR VAL VAL PHE SER SER SEQRES 13 B 335 PRO SER GLU SER SER ALA ASN LYS MET LYS GLU ILE PHE SEQRES 14 B 335 GLU THR GLU TYR PHE GLY VAL GLU VAL THR THR ASP ILE SEQRES 15 B 335 ILE GLY THR GLU ILE THR SER ALA LEU LYS ASN VAL TYR SEQRES 16 B 335 SER ILE ALA ILE ALA TRP ILE ARG GLY TYR GLU SER ARG SEQRES 17 B 335 LYS ASN VAL GLU MET SER ASN ALA LYS GLY VAL ILE ALA SEQRES 18 B 335 THR ARG ALA ILE ASN GLU MET ALA GLU LEU ILE GLU ILE SEQRES 19 B 335 LEU GLY GLY ASP ARG GLU THR ALA PHE GLY LEU SER GLY SEQRES 20 B 335 PHE GLY ASP LEU ILE ALA THR PHE ARG GLY GLY ARG ASN SEQRES 21 B 335 GLY MET LEU GLY GLU LEU LEU GLY LYS GLY LEU SER ILE SEQRES 22 B 335 ASP GLU ALA MET GLU GLU LEU GLU ARG ARG GLY VAL GLY SEQRES 23 B 335 VAL VAL GLU GLY TYR LYS THR ALA GLU LYS ALA TYR ARG SEQRES 24 B 335 LEU SER SER LYS ILE ASN ALA ASP THR LYS LEU LEU ASP SEQRES 25 B 335 SER ILE TYR ARG VAL LEU TYR GLU GLY LEU LYS VAL GLU SEQRES 26 B 335 GLU VAL LEU PHE GLU LEU ALA THR PHE LYS HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET GOL A1009 6 HET SO4 B1001 5 HET SO4 B1006 5 HET SO4 B1007 5 HET SO4 B1008 5 HET NH4 B1011 1 HET GOL B1010 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM NH4 AMMONIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 8(O4 S 2-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 12 NH4 H4 N 1+ FORMUL 14 HOH *753(H2 O) HELIX 1 1 GLY A 9 GLY A 23 1 15 HELIX 2 2 THR A 31 PHE A 33 5 3 HELIX 3 3 ASP A 34 ALA A 43 1 10 HELIX 4 4 TRP A 61 GLU A 63 5 3 HELIX 5 5 GLN A 64 GLU A 70 1 7 HELIX 6 6 SER A 80 ASP A 82 5 3 HELIX 7 7 GLY A 83 LEU A 92 1 10 HELIX 8 8 VAL A 117 ARG A 123 1 7 HELIX 9 9 LEU A 128 GLU A 130 5 3 HELIX 10 10 ILE A 140 LYS A 146 1 7 HELIX 11 11 SER A 158 GLU A 170 1 13 HELIX 12 12 ASP A 181 ASN A 210 1 30 HELIX 13 13 MET A 213 GLY A 236 1 24 HELIX 14 14 ASP A 238 GLY A 244 5 7 HELIX 15 15 GLY A 247 THR A 254 1 8 HELIX 16 16 GLY A 257 LYS A 269 1 13 HELIX 17 17 SER A 272 ARG A 283 1 12 HELIX 18 18 VAL A 288 ILE A 304 1 17 HELIX 19 19 THR A 308 GLU A 320 1 13 HELIX 20 20 LYS A 323 THR A 333 1 11 HELIX 21 21 GLY B 9 ASN B 22 1 14 HELIX 22 22 ASP B 34 ALA B 43 1 10 HELIX 23 23 TRP B 61 GLU B 63 5 3 HELIX 24 24 GLN B 64 GLU B 70 1 7 HELIX 25 25 SER B 80 ASP B 82 5 3 HELIX 26 26 GLY B 83 LEU B 92 1 10 HELIX 27 27 VAL B 117 LYS B 125 1 9 HELIX 28 28 HIS B 126 GLU B 130 5 5 HELIX 29 29 ILE B 140 LYS B 146 1 7 HELIX 30 30 SER B 158 GLU B 170 1 13 HELIX 31 31 ASP B 181 ASN B 210 1 30 HELIX 32 32 MET B 213 GLY B 236 1 24 HELIX 33 33 ASP B 238 GLY B 244 5 7 HELIX 34 34 GLY B 247 THR B 254 1 8 HELIX 35 35 GLY B 257 LYS B 269 1 13 HELIX 36 36 SER B 272 ARG B 283 1 12 HELIX 37 37 VAL B 288 ASN B 305 1 18 HELIX 38 38 THR B 308 GLU B 320 1 13 HELIX 39 39 LYS B 323 GLU B 326 5 4 HELIX 40 40 VAL B 327 THR B 333 1 7 SHEET 1 A 8 VAL A 57 PHE A 60 0 SHEET 2 A 8 GLU A 25 TRP A 29 1 N ILE A 28 O PHE A 60 SHEET 3 A 8 ILE A 2 LEU A 6 1 N ILE A 5 O ARG A 27 SHEET 4 A 8 VAL A 74 LEU A 77 1 O LEU A 76 N LEU A 6 SHEET 5 A 8 TYR A 99 LEU A 102 1 O VAL A 101 N VAL A 75 SHEET 6 A 8 THR A 132 THR A 136 1 O VAL A 133 N ILE A 100 SHEET 7 A 8 THR A 150 SER A 155 -1 O SER A 155 N ALA A 134 SHEET 8 A 8 PHE A 174 THR A 179 1 O GLU A 177 N PHE A 154 SHEET 1 B 2 LEU A 107 PHE A 110 0 SHEET 2 B 2 SER A 113 THR A 116 -1 O LEU A 115 N ILE A 108 SHEET 1 C 8 VAL B 57 PHE B 60 0 SHEET 2 C 8 GLU B 25 TRP B 29 1 N ILE B 28 O PHE B 60 SHEET 3 C 8 ILE B 2 LEU B 6 1 N ILE B 5 O ARG B 27 SHEET 4 C 8 VAL B 74 LEU B 77 1 O LEU B 76 N LEU B 6 SHEET 5 C 8 TYR B 99 LEU B 102 1 O VAL B 101 N VAL B 75 SHEET 6 C 8 THR B 132 THR B 136 1 O VAL B 133 N ILE B 100 SHEET 7 C 8 THR B 150 SER B 155 -1 O VAL B 153 N THR B 136 SHEET 8 C 8 PHE B 174 THR B 179 1 O GLU B 177 N PHE B 154 SHEET 1 D 2 LEU B 107 PHE B 110 0 SHEET 2 D 2 SER B 113 THR B 116 -1 O LEU B 115 N ILE B 108 SITE 1 AC1 3 ARG B 147 HOH B1175 HOH B1292 SITE 1 AC2 4 LYS A 53 ASN A 55 HOH A1070 HOH A1126 SITE 1 AC3 5 LYS A 105 LYS A 192 ASN A 193 HOH A1078 SITE 2 AC3 5 HOH A1239 SITE 1 AC4 5 ARG A 256 GLY A 257 GLY A 258 HOH A1052 SITE 2 AC4 5 HOH A1159 SITE 1 AC5 6 ARG A 203 ARG A 256 GOL A1009 HOH A1067 SITE 2 AC5 6 HOH A1158 HOH A1334 SITE 1 AC6 7 ARG B 256 GLY B 257 GLY B 258 HOH B1065 SITE 2 AC6 7 HOH B1197 HOH B1201 HOH B1243 SITE 1 AC7 6 LYS B 105 LYS B 192 ASN B 193 HOH B1120 SITE 2 AC7 6 HOH B1145 HOH B1280 SITE 1 AC8 3 GLY B 258 ARG B 259 HOH B1341 SITE 1 AC9 6 LEU B 115 THR B 116 GLU B 119 HOH B1114 SITE 2 AC9 6 HOH B1381 HOH B1382 SITE 1 BC1 8 ALA A 200 ARG A 203 LYS A 217 PHE A 255 SITE 2 BC1 8 SO4 A1005 HOH A1020 HOH A1031 HOH A1112 SITE 1 BC2 7 ALA B 200 ARG B 203 LYS B 217 PHE B 255 SITE 2 BC2 7 HOH B1022 HOH B1059 HOH B1248 CRYST1 63.223 67.586 81.156 90.00 106.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015817 0.000000 0.004698 0.00000 SCALE2 0.000000 0.014796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012854 0.00000