HEADER HORMONE/GROWTH FACTOR 09-JUL-04 1TZ5 TITLE [PNPY19-23]-HPP BOUND TO DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANCREATIC PROHORMONE,NEUROPEPTIDE Y,PANCREATIC PROHORMONE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PANCREATIC POLYPEPTIDE,PP,PANCREATIC POLYPEPTIDE,PP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, SUS SCROFA; SOURCE 3 ORGANISM_COMMON: HUMAN, PIG; SOURCE 4 ORGANISM_TAXID: 9606, 9823; SOURCE 5 GENE: PPY, PNP, NPY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PUBK19-[PNPY19-23]-HPP-G KEYWDS NPY-PP CHIMERA, HORMONE-GROWTH FACTOR COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.LERCH,H.KAMIMORI,G.FOLKERS,M.I.AGUILAR,A.G.BECK-SICKINGER,O.ZERBE REVDAT 4 20-NOV-24 1TZ5 1 REMARK REVDAT 3 01-JAN-20 1TZ5 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV LINK REVDAT 2 24-FEB-09 1TZ5 1 VERSN REVDAT 1 05-JUL-05 1TZ5 0 JRNL AUTH M.LERCH,H.KAMIMORI,G.FOLKERS,M.I.AGUILAR,A.G.BECK-SICKINGER, JRNL AUTH 2 O.ZERBE JRNL TITL STRONGLY ALTERED RECEPTOR BINDING PROPERTIES IN PP AND NPY JRNL TITL 2 CHIMERAS ARE ACCOMPANIED BY CHANGES IN STRUCTURE AND JRNL TITL 3 MEMBRANE BINDING JRNL REF BIOCHEMISTRY V. 44 9255 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15966750 JRNL DOI 10.1021/BI0501232 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, DYANA 1.5 REMARK 3 AUTHORS : GUENTERT (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FURTHER REFINEMENT USING THE PROGRAM REMARK 3 AMBER (EXPLICIT SOLVENT) REMARK 4 REMARK 4 1TZ5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023044. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2MM [PNPY19-23]-HPP; 90% H2O, REMARK 210 10% D2O; 2MM [PNPY19-23]-HPP; 99% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, XEASY 1.53, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS FOLLOWED REMARK 210 BY REFINEMENT IN AMBER6 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND ENERGY, REMARK 210 STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 13 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 18 ARG A 35 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 3 92.68 -168.12 REMARK 500 1 VAL A 6 152.87 64.36 REMARK 500 1 TYR A 7 78.99 58.92 REMARK 500 1 ASN A 11 100.55 66.43 REMARK 500 2 VAL A 6 156.63 64.70 REMARK 500 2 ASP A 10 87.77 65.56 REMARK 500 2 ALA A 12 90.64 60.16 REMARK 500 2 ARG A 35 89.10 -167.19 REMARK 500 3 GLU A 4 151.54 -46.09 REMARK 500 3 PRO A 5 1.97 -68.99 REMARK 500 3 VAL A 6 12.65 58.69 REMARK 500 3 TYR A 7 87.77 -151.38 REMARK 500 3 ASP A 10 175.77 62.12 REMARK 500 3 ASN A 11 70.11 -155.21 REMARK 500 3 THR A 13 142.23 -172.23 REMARK 500 3 ARG A 33 146.72 63.12 REMARK 500 4 LEU A 3 116.28 -161.66 REMARK 500 4 TYR A 7 77.37 51.28 REMARK 500 4 ASN A 11 -78.26 -59.29 REMARK 500 5 GLU A 4 70.60 67.73 REMARK 500 5 PRO A 5 -168.23 -69.36 REMARK 500 5 VAL A 6 154.99 -46.30 REMARK 500 5 TYR A 7 163.11 62.32 REMARK 500 5 ASP A 10 177.78 63.19 REMARK 500 5 ALA A 12 -169.92 55.43 REMARK 500 5 ARG A 35 86.79 -165.61 REMARK 500 6 TYR A 7 91.79 -27.06 REMARK 500 6 ASP A 10 79.58 39.90 REMARK 500 6 ASN A 11 77.58 57.26 REMARK 500 6 THR A 13 103.72 -52.89 REMARK 500 6 ARG A 35 -39.71 -164.32 REMARK 500 7 LEU A 3 138.74 66.17 REMARK 500 7 VAL A 6 152.58 64.14 REMARK 500 7 TYR A 7 87.08 54.19 REMARK 500 7 ARG A 35 -75.63 161.01 REMARK 500 8 PRO A 5 -173.63 -69.53 REMARK 500 8 TYR A 7 86.90 -153.05 REMARK 500 8 ASP A 10 168.66 68.47 REMARK 500 8 THR A 13 155.51 84.96 REMARK 500 8 THR A 32 30.02 -93.23 REMARK 500 8 ARG A 35 87.46 -163.64 REMARK 500 9 GLU A 15 4.70 55.73 REMARK 500 9 ARG A 35 84.48 -173.52 REMARK 500 10 GLU A 4 169.18 59.85 REMARK 500 10 ASN A 11 73.09 -172.06 REMARK 500 10 ALA A 12 107.53 69.76 REMARK 500 10 ARG A 33 -60.21 -175.99 REMARK 500 10 ARG A 35 -30.73 165.22 REMARK 500 11 ASN A 11 119.19 65.98 REMARK 500 11 ALA A 12 -170.40 -64.98 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 37 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LJV RELATED DB: PDB REMARK 900 BPP BOUND TO DPC MICELLES REMARK 900 RELATED ID: 1F8P RELATED DB: PDB REMARK 900 PNPY BOUND TO DPC MICELLES REMARK 900 RELATED ID: 1TZ4 RELATED DB: PDB REMARK 900 [HPP19-23]-PNPY BOUND TO DPC MICELLES DBREF 1TZ5 A 1 18 UNP P01298 PAHO_HUMAN 30 47 DBREF 1TZ5 A 19 23 UNP P01304 NPY_PIG 28 32 DBREF 1TZ5 A 24 36 UNP P01298 PAHO_HUMAN 53 65 SEQADV 1TZ5 NH2 A 37 UNP P01298 AMIDATION SEQRES 1 A 37 ALA PRO LEU GLU PRO VAL TYR PRO GLY ASP ASN ALA THR SEQRES 2 A 37 PRO GLU GLN MET ALA ARG TYR TYR SER ALA LEU ARG ARG SEQRES 3 A 37 TYR ILE ASN MET LEU THR ARG PRO ARG TYR NH2 HET NH2 A 37 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 1 THR A 13 THR A 32 1 20 LINK C TYR A 36 N NH2 A 37 1555 1555 1.32 SITE 1 AC1 1 TYR A 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1