HEADER TRANSCRIPTION 12-JUL-04 1TZT TITLE T. MARITIMA NUSB, P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N UTILIZATION SUBSTANCE PROTEIN B HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUSB PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: NUSB, TM1765; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNCO113, PNOC113-TMANUSB KEYWDS N-UTILIZATION SUBSTANCE, NUSB, RNA-PROTEIN INTERACTION, KEYWDS 2 TRANSCRIPTIONAL ANTITERMINATION, TRANSCRIPTION REGULATION, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR I.BONIN,R.ROBELEK,H.BENECKE,H.URLAUB,A.BACHER,G.RICHTER,M.C.WAHL REVDAT 5 25-OCT-23 1TZT 1 REMARK REVDAT 4 13-JUL-11 1TZT 1 VERSN REVDAT 3 24-FEB-09 1TZT 1 VERSN REVDAT 2 02-NOV-04 1TZT 1 JRNL REVDAT 1 31-AUG-04 1TZT 0 JRNL AUTH I.BONIN,R.ROBELEK,H.BENECKE,H.URLAUB,A.BACHER,G.RICHTER, JRNL AUTH 2 M.C.WAHL JRNL TITL CRYSTAL STRUCTURES OF THE ANTITERMINATION FACTOR NUSB FROM JRNL TITL 2 THERMOTOGA MARITIMA AND IMPLICATIONS FOR RNA BINDING JRNL REF BIOCHEM.J. V. 383 419 2004 JRNL REFN ISSN 0264-6021 JRNL PMID 15279620 JRNL DOI 10.1042/BJ20040889 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 40560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2165 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 392 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.38000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : 3.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.021 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2351 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2235 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3153 ; 1.181 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5159 ; 0.800 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 4.474 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2556 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 498 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 637 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2652 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1398 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 170 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.127 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 102 ; 0.315 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.114 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1404 ; 1.417 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2259 ; 2.182 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 947 ; 1.576 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 894 ; 2.342 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3600 -0.3730 31.0280 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.1035 REMARK 3 T33: 0.0108 T12: 0.0133 REMARK 3 T13: 0.0004 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 2.7032 L22: 0.7206 REMARK 3 L33: 0.3045 L12: -0.1279 REMARK 3 L13: -0.0210 L23: -0.0078 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: 0.3203 S13: 0.0270 REMARK 3 S21: -0.0143 S22: -0.0665 S23: 0.0222 REMARK 3 S31: 0.0027 S32: 0.1162 S33: 0.0414 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7888 -7.1347 -6.0462 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.0962 REMARK 3 T33: 0.0104 T12: 0.0060 REMARK 3 T13: 0.0025 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 4.0656 L22: 0.6761 REMARK 3 L33: 0.2104 L12: 0.0941 REMARK 3 L13: 0.6281 L23: 0.0552 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: 0.3743 S13: 0.0389 REMARK 3 S21: 0.0006 S22: -0.0248 S23: 0.0218 REMARK 3 S31: 0.0081 S32: -0.0182 S33: 0.0323 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 THE STRUCTURE WAS REFINED ALSO WITH CNS 1.0. REMARK 4 REMARK 4 1TZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 28.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61600 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ID 1EYV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG 8000, PH 6.3, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.17700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 LYS B 96 CG CD CE NZ REMARK 470 ASP B 97 CG OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 23 CZ NH1 NH2 REMARK 480 ASP A 24 OD1 OD2 REMARK 480 GLU A 37 CB CG CD OE1 OE2 REMARK 480 GLU A 45 OE1 REMARK 480 GLU A 56 CB CG CD OE1 OE2 REMARK 480 LYS A 71 CD CE NZ REMARK 480 ARG A 113 NH1 REMARK 480 GLU A 117 CD OE1 OE2 REMARK 480 ASN A 118 OD1 ND2 REMARK 480 LYS B 2 NZ REMARK 480 ARG B 23 CZ NH1 NH2 REMARK 480 ARG B 52 CD NE CZ NH1 NH2 REMARK 480 GLU B 56 CG CD OE1 OE2 REMARK 480 GLU B 70 CB CG CD OE1 OE2 REMARK 480 LYS B 71 NZ REMARK 480 ASN B 75 ND2 REMARK 480 LYS B 112 CE NZ REMARK 480 ASN B 118 ND2 REMARK 480 LYS B 137 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 23 NE ARG A 23 CZ -0.139 REMARK 500 GLU A 45 CD GLU A 45 OE1 -0.119 REMARK 500 ARG B 23 NE ARG B 23 CZ -0.170 REMARK 500 LYS B 71 CE LYS B 71 NZ -0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 105 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 113 NE - CZ - NH1 ANGL. DEV. = -8.6 DEGREES REMARK 500 ARG B 23 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG B 23 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 23 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP B 105 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 128 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 22 48.29 -155.20 REMARK 500 ASP A 40 159.46 -32.78 REMARK 500 LYS A 71 -103.99 -127.19 REMARK 500 ARG B 22 51.46 -142.30 REMARK 500 ASP B 40 166.31 -48.83 REMARK 500 LYS B 71 -103.12 -126.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 23 0.09 SIDE CHAIN REMARK 500 ASN B 118 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TZU RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A SPACE GROUP(P212121) REMARK 900 RELATED ID: 1TZV RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A SPACE GROUP(P3121), FORM 1 REMARK 900 RELATED ID: 1TZW RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A SPACE GROUP(P3121), FORM 2 REMARK 900 RELATED ID: 1TZX RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A SPACE GROUP(P3221) DBREF 1TZT A 1 142 UNP Q9X286 NUSB_THEMA 1 142 DBREF 1TZT B 1 142 UNP Q9X286 NUSB_THEMA 1 142 SEQRES 1 A 142 MET LYS THR PRO ARG ARG ARG MET ARG LEU ALA VAL PHE SEQRES 2 A 142 LYS ALA LEU PHE GLN HIS GLU PHE ARG ARG ASP GLU ASP SEQRES 3 A 142 LEU GLU GLN ILE LEU GLU GLU ILE LEU ASP GLU THR TYR SEQRES 4 A 142 ASP LYS LYS ALA LYS GLU ASP ALA ARG ARG TYR ILE ARG SEQRES 5 A 142 GLY ILE LYS GLU ASN LEU SER MET ILE ASP ASP LEU ILE SEQRES 6 A 142 SER ARG TYR LEU GLU LYS TRP SER LEU ASN ARG LEU SER SEQRES 7 A 142 VAL VAL ASP ARG ASN VAL LEU ARG LEU ALA THR TYR GLU SEQRES 8 A 142 LEU LEU PHE GLU LYS ASP ILE PRO ILE GLU VAL THR ILE SEQRES 9 A 142 ASP GLU ALA ILE GLU ILE ALA LYS ARG TYR GLY THR GLU SEQRES 10 A 142 ASN SER GLY LYS PHE VAL ASN GLY ILE LEU ASP ARG ILE SEQRES 11 A 142 ALA LYS GLU HIS ALA PRO LYS GLU LYS PHE GLU LEU SEQRES 1 B 142 MET LYS THR PRO ARG ARG ARG MET ARG LEU ALA VAL PHE SEQRES 2 B 142 LYS ALA LEU PHE GLN HIS GLU PHE ARG ARG ASP GLU ASP SEQRES 3 B 142 LEU GLU GLN ILE LEU GLU GLU ILE LEU ASP GLU THR TYR SEQRES 4 B 142 ASP LYS LYS ALA LYS GLU ASP ALA ARG ARG TYR ILE ARG SEQRES 5 B 142 GLY ILE LYS GLU ASN LEU SER MET ILE ASP ASP LEU ILE SEQRES 6 B 142 SER ARG TYR LEU GLU LYS TRP SER LEU ASN ARG LEU SER SEQRES 7 B 142 VAL VAL ASP ARG ASN VAL LEU ARG LEU ALA THR TYR GLU SEQRES 8 B 142 LEU LEU PHE GLU LYS ASP ILE PRO ILE GLU VAL THR ILE SEQRES 9 B 142 ASP GLU ALA ILE GLU ILE ALA LYS ARG TYR GLY THR GLU SEQRES 10 B 142 ASN SER GLY LYS PHE VAL ASN GLY ILE LEU ASP ARG ILE SEQRES 11 B 142 ALA LYS GLU HIS ALA PRO LYS GLU LYS PHE GLU LEU HET SO4 A 800 5 HET SO4 B 900 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *392(H2 O) HELIX 1 1 PRO A 4 GLU A 20 1 17 HELIX 2 2 ASP A 26 LEU A 35 1 10 HELIX 3 3 ASP A 40 ASN A 57 1 18 HELIX 4 4 ASN A 57 ARG A 67 1 11 HELIX 5 5 SER A 73 LEU A 77 5 5 HELIX 6 6 SER A 78 GLU A 95 1 18 HELIX 7 7 PRO A 99 GLY A 115 1 17 HELIX 8 8 ASN A 118 ALA A 135 1 18 HELIX 9 9 PRO A 136 LEU A 142 5 7 HELIX 10 10 PRO B 4 GLU B 20 1 17 HELIX 11 11 ASP B 26 LEU B 35 1 10 HELIX 12 12 ASP B 40 ASN B 57 1 18 HELIX 13 13 ASN B 57 ARG B 67 1 11 HELIX 14 14 SER B 73 LEU B 77 5 5 HELIX 15 15 SER B 78 GLU B 95 1 18 HELIX 16 16 PRO B 99 GLY B 115 1 17 HELIX 17 17 ASN B 118 ALA B 135 1 18 HELIX 18 18 PRO B 136 LEU B 142 5 7 SITE 1 AC1 2 LYS A 44 ARG A 48 SITE 1 AC2 4 LYS A 121 LYS B 41 LYS B 44 ARG B 48 CRYST1 59.714 34.354 74.322 90.00 94.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016746 0.000000 0.001223 0.00000 SCALE2 0.000000 0.029109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013491 0.00000