HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-JUL-04 1U05 TITLE CRYSTAL STRUCTURE OF PROTEIN YFIH FROM SHIGELLA FLEXNERI, PFAM DUF152 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF, CONSERVED HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, HYPOTHETICAL PROTEIN, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.SEETHARAMAN,S.SWAMINATHAN,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 23-AUG-23 1U05 1 REMARK REVDAT 5 03-FEB-21 1U05 1 AUTHOR REMARK LINK REVDAT 4 31-JAN-18 1U05 1 REMARK REVDAT 3 24-FEB-09 1U05 1 VERSN REVDAT 2 25-JAN-05 1U05 1 AUTHOR KEYWDS REMARK REVDAT 1 17-AUG-04 1U05 0 JRNL AUTH J.SEETHARAMAN,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF CONSERVED HYPOTHETICAL PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 314482.120 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 15869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1576 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2387 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 246 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3710 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.74000 REMARK 3 B22 (A**2) : -4.59000 REMARK 3 B33 (A**2) : -2.16000 REMARK 3 B12 (A**2) : -1.43000 REMARK 3 B13 (A**2) : -1.57000 REMARK 3 B23 (A**2) : 0.02000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.130 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.830 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.800 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.530 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 34.44 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CBASS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18477 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.06700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1RW0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ZINC ACETATE, SODIUM CACODYLATE, PEG REMARK 280 8000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 20K, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 32 N SER A 33 1.38 REMARK 500 O SER B 33 N LEU B 34 1.67 REMARK 500 O SER A 33 N LEU A 34 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 HIS B 46 OE1 GLU B 208 1565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 32 C SER A 33 N -0.231 REMARK 500 SER A 33 C LEU A 34 N -0.256 REMARK 500 ASP B 32 C SER B 33 N -0.238 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 32 CA - C - N ANGL. DEV. = 47.7 DEGREES REMARK 500 ASP A 32 O - C - N ANGL. DEV. = -50.6 DEGREES REMARK 500 SER A 33 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 SER A 33 CA - C - N ANGL. DEV. = 14.6 DEGREES REMARK 500 SER A 33 O - C - N ANGL. DEV. = -26.8 DEGREES REMARK 500 SER B 33 C - N - CA ANGL. DEV. = 23.9 DEGREES REMARK 500 SER B 33 CA - C - N ANGL. DEV. = 31.6 DEGREES REMARK 500 SER B 33 O - C - N ANGL. DEV. = -37.6 DEGREES REMARK 500 LEU B 34 C - N - CA ANGL. DEV. = 28.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 10 62.60 -69.73 REMARK 500 VAL A 26 -1.21 -141.53 REMARK 500 ASP A 32 105.23 -46.52 REMARK 500 SER A 33 -83.48 -125.23 REMARK 500 GLU A 81 -37.37 -33.12 REMARK 500 ALA A 84 -74.33 -85.58 REMARK 500 ALA A 88 170.35 169.75 REMARK 500 ALA A 105 55.40 -166.21 REMARK 500 ASP A 106 -47.28 133.30 REMARK 500 PRO A 159 12.69 -67.85 REMARK 500 VAL A 175 -38.73 -141.15 REMARK 500 ASP A 176 84.29 -153.07 REMARK 500 ALA A 177 -12.57 -39.72 REMARK 500 HIS A 186 85.22 -152.27 REMARK 500 VAL A 207 96.36 -58.00 REMARK 500 LYS A 231 -71.00 66.05 REMARK 500 SER B 2 34.15 75.24 REMARK 500 LYS B 3 117.90 -36.70 REMARK 500 PRO B 10 73.45 -68.56 REMARK 500 LYS B 13 -73.70 -43.32 REMARK 500 PRO B 30 31.52 -86.36 REMARK 500 ASP B 32 132.57 -32.79 REMARK 500 SER B 33 -136.32 73.43 REMARK 500 LEU B 34 63.03 -65.09 REMARK 500 LYS B 73 21.14 -146.80 REMARK 500 GLU B 81 -38.95 -39.85 REMARK 500 PRO B 82 97.79 -68.36 REMARK 500 ALA B 105 55.55 -173.24 REMARK 500 ASP B 106 -51.17 132.21 REMARK 500 SER B 140 11.33 -65.63 REMARK 500 ASP B 176 107.08 -165.68 REMARK 500 ALA B 179 4.29 -67.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 33 -21.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 NE2 REMARK 620 2 CYS A 107 SG 106.3 REMARK 620 3 HIS A 124 NE2 104.0 101.5 REMARK 620 4 HOH A 584 O 129.0 96.4 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 71 NE2 REMARK 620 2 CYS B 107 SG 104.5 REMARK 620 3 HIS B 124 NE2 101.5 106.4 REMARK 620 4 HOH B 509 O 131.7 97.7 112.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RV9 RELATED DB: PDB REMARK 900 RELATED ID: 1RW0 RELATED DB: PDB REMARK 900 RELATED ID: NYSGXRC-T899 RELATED DB: TARGETDB DBREF 1U05 A 1 243 UNP Q83K13 Q83K13_SHIFL 1 243 DBREF 1U05 B 1 243 UNP Q83K13 Q83K13_SHIFL 1 243 SEQRES 1 A 243 MET SER LYS LEU ILE VAL PRO GLN TRP PRO LEU PRO LYS SEQRES 2 A 243 GLY VAL ALA ALA CYS SER SER THR ARG ILE GLY GLY VAL SEQRES 3 A 243 SER LEU PRO PRO TYR ASP SER LEU ASN LEU GLY ALA HIS SEQRES 4 A 243 CYS GLY ASP ASN PRO ASP HIS VAL GLU GLU ASN ARG LYS SEQRES 5 A 243 ARG LEU PHE ALA ALA GLY ASN LEU PRO SER LYS PRO VAL SEQRES 6 A 243 TRP LEU GLU GLN VAL HIS GLY LYS ASP VAL LEU LYS LEU SEQRES 7 A 243 THR GLY GLU PRO TYR ALA SER LYS ARG ALA ASP ALA SER SEQRES 8 A 243 TYR SER ASN THR PRO GLY THR VAL CYS ALA VAL MET THR SEQRES 9 A 243 ALA ASP CYS LEU PRO VAL LEU PHE CYS ASN ARG ALA GLY SEQRES 10 A 243 THR GLU VAL ALA ALA VAL HIS ALA GLY TRP ARG GLY LEU SEQRES 11 A 243 CYS ALA GLY VAL LEU GLU GLU THR VAL SER CYS PHE ALA SEQRES 12 A 243 ASP LYS PRO GLU ASN ILE LEU ALA TRP LEU GLY PRO ALA SEQRES 13 A 243 ILE GLY PRO ARG ALA PHE GLU VAL GLY ALA GLU VAL ARG SEQRES 14 A 243 GLU ALA PHE MET ALA VAL ASP ALA LYS ALA SER ALA ALA SEQRES 15 A 243 PHE ILE GLN HIS GLY ASP LYS TYR LEU ALA ASP ILE TYR SEQRES 16 A 243 GLN LEU ALA ARG GLN ARG LEU ALA ASN VAL GLY VAL GLU SEQRES 17 A 243 GLN ILE PHE GLY GLY ASP ARG CYS THR TYR THR GLU ASN SEQRES 18 A 243 GLU THR PHE PHE SER TYR ARG ARG ASP LYS THR THR GLY SEQRES 19 A 243 ARG MET ALA SER PHE ILE TRP LEU ILE SEQRES 1 B 243 MET SER LYS LEU ILE VAL PRO GLN TRP PRO LEU PRO LYS SEQRES 2 B 243 GLY VAL ALA ALA CYS SER SER THR ARG ILE GLY GLY VAL SEQRES 3 B 243 SER LEU PRO PRO TYR ASP SER LEU ASN LEU GLY ALA HIS SEQRES 4 B 243 CYS GLY ASP ASN PRO ASP HIS VAL GLU GLU ASN ARG LYS SEQRES 5 B 243 ARG LEU PHE ALA ALA GLY ASN LEU PRO SER LYS PRO VAL SEQRES 6 B 243 TRP LEU GLU GLN VAL HIS GLY LYS ASP VAL LEU LYS LEU SEQRES 7 B 243 THR GLY GLU PRO TYR ALA SER LYS ARG ALA ASP ALA SER SEQRES 8 B 243 TYR SER ASN THR PRO GLY THR VAL CYS ALA VAL MET THR SEQRES 9 B 243 ALA ASP CYS LEU PRO VAL LEU PHE CYS ASN ARG ALA GLY SEQRES 10 B 243 THR GLU VAL ALA ALA VAL HIS ALA GLY TRP ARG GLY LEU SEQRES 11 B 243 CYS ALA GLY VAL LEU GLU GLU THR VAL SER CYS PHE ALA SEQRES 12 B 243 ASP LYS PRO GLU ASN ILE LEU ALA TRP LEU GLY PRO ALA SEQRES 13 B 243 ILE GLY PRO ARG ALA PHE GLU VAL GLY ALA GLU VAL ARG SEQRES 14 B 243 GLU ALA PHE MET ALA VAL ASP ALA LYS ALA SER ALA ALA SEQRES 15 B 243 PHE ILE GLN HIS GLY ASP LYS TYR LEU ALA ASP ILE TYR SEQRES 16 B 243 GLN LEU ALA ARG GLN ARG LEU ALA ASN VAL GLY VAL GLU SEQRES 17 B 243 GLN ILE PHE GLY GLY ASP ARG CYS THR TYR THR GLU ASN SEQRES 18 B 243 GLU THR PHE PHE SER TYR ARG ARG ASP LYS THR THR GLY SEQRES 19 B 243 ARG MET ALA SER PHE ILE TRP LEU ILE HET ZN A 500 1 HET ZN B 501 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *191(H2 O) HELIX 1 1 ASN A 43 ASN A 59 1 17 HELIX 2 2 GLY A 126 ALA A 132 1 7 HELIX 3 3 GLY A 133 SER A 140 1 8 HELIX 4 4 LYS A 145 GLU A 147 5 3 HELIX 5 5 GLY A 165 ALA A 174 1 10 HELIX 6 6 ASP A 176 ALA A 181 5 6 HELIX 7 7 ASP A 193 GLY A 206 1 14 HELIX 8 8 SER A 226 LYS A 231 1 6 HELIX 9 9 ASN B 43 GLY B 58 1 16 HELIX 10 10 GLY B 126 ALA B 132 1 7 HELIX 11 11 GLY B 133 SER B 140 1 8 HELIX 12 12 LYS B 145 GLU B 147 5 3 HELIX 13 13 GLY B 165 ASP B 176 1 12 HELIX 14 14 ALA B 177 ALA B 181 5 5 HELIX 15 15 ASP B 193 VAL B 205 1 13 SHEET 1 A 4 LEU A 4 ILE A 5 0 SHEET 2 A 4 VAL A 15 SER A 20 -1 O SER A 19 N ILE A 5 SHEET 3 A 4 MET A 236 LEU A 242 -1 O PHE A 239 N CYS A 18 SHEET 4 A 4 VAL A 99 THR A 104 -1 N THR A 104 O MET A 236 SHEET 1 B 6 VAL A 75 LYS A 77 0 SHEET 2 B 6 ALA A 90 SER A 93 1 O ALA A 90 N LEU A 76 SHEET 3 B 6 VAL A 120 ALA A 125 -1 O VAL A 120 N SER A 93 SHEET 4 B 6 LEU A 108 ASN A 114 -1 N PHE A 112 O ALA A 121 SHEET 5 B 6 ILE A 149 LEU A 153 -1 O LEU A 150 N CYS A 113 SHEET 6 B 6 GLN A 209 GLY A 212 1 O PHE A 211 N ALA A 151 SHEET 1 C 3 GLU A 163 VAL A 164 0 SHEET 2 C 3 LYS A 189 ALA A 192 -1 O TYR A 190 N VAL A 164 SHEET 3 C 3 PHE A 183 HIS A 186 -1 N HIS A 186 O LYS A 189 SHEET 1 D 3 VAL B 15 SER B 19 0 SHEET 2 D 3 MET B 236 LEU B 242 -1 O PHE B 239 N CYS B 18 SHEET 3 D 3 VAL B 99 THR B 104 -1 N THR B 104 O MET B 236 SHEET 1 E 6 VAL B 75 LYS B 77 0 SHEET 2 E 6 ALA B 90 SER B 93 1 O ALA B 90 N LEU B 76 SHEET 3 E 6 VAL B 120 ALA B 125 -1 O VAL B 120 N SER B 93 SHEET 4 E 6 LEU B 108 ASN B 114 -1 N PHE B 112 O ALA B 121 SHEET 5 E 6 ILE B 149 LEU B 153 -1 O LEU B 150 N CYS B 113 SHEET 6 E 6 GLN B 209 GLY B 212 1 O PHE B 211 N ALA B 151 SHEET 1 F 3 GLU B 163 VAL B 164 0 SHEET 2 F 3 LYS B 189 ALA B 192 -1 O TYR B 190 N VAL B 164 SHEET 3 F 3 PHE B 183 HIS B 186 -1 N HIS B 186 O LYS B 189 LINK NE2 HIS A 71 ZN ZN A 500 1555 1555 2.31 LINK SG CYS A 107 ZN ZN A 500 1555 1555 2.32 LINK NE2 HIS A 124 ZN ZN A 500 1555 1555 2.17 LINK ZN ZN A 500 O HOH A 584 1555 1555 2.34 LINK NE2 HIS B 71 ZN ZN B 501 1555 1555 2.23 LINK SG CYS B 107 ZN ZN B 501 1555 1555 2.27 LINK NE2 HIS B 124 ZN ZN B 501 1555 1555 2.20 LINK ZN ZN B 501 O HOH B 509 1555 1555 2.38 CISPEP 1 PRO A 29 PRO A 30 0 0.49 CISPEP 2 ASP A 32 SER A 33 0 27.28 CISPEP 3 PRO B 29 PRO B 30 0 0.35 SITE 1 AC1 4 HIS A 71 CYS A 107 HIS A 124 HOH A 584 SITE 1 AC2 5 HIS B 71 CYS B 107 HIS B 124 HOH B 509 SITE 2 AC2 5 HOH B 528 CRYST1 43.683 50.465 55.265 90.25 96.51 90.29 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022892 0.000116 0.002613 0.00000 SCALE2 0.000000 0.019816 0.000098 0.00000 SCALE3 0.000000 0.000000 0.018212 0.00000