HEADER HYDROLASE 13-JUL-04 1U0L TITLE CRYSTAL STRUCTURE OF YJEQ FROM THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GTPASE ENGC; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: ENGC, YJEQ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PB4 (HOME MADE VECTOR); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSJS1244 KEYWDS GTPASE, PERMUTATION, OB-FOLD, ZINC-FINGER, STRUCTURAL GENOMICS, BSGC KEYWDS 2 STRUCTURE FUNDED BY NIH, PROTEIN STRUCTURE INITIATIVE, PSI, BERKELEY KEYWDS 3 STRUCTURAL GENOMICS CENTER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.SHIN,Y.LOU,J.JARU,R.KIM,H.YOKOTA,S.H.KIM,BERKELEY STRUCTURAL AUTHOR 2 GENOMICS CENTER (BSGC) REVDAT 6 14-FEB-24 1U0L 1 REMARK SEQADV LINK REVDAT 5 24-FEB-09 1U0L 1 VERSN REVDAT 4 05-APR-05 1U0L 1 REMARK REVDAT 3 08-MAR-05 1U0L 1 AUTHOR KEYWDS REMARK REVDAT 2 21-SEP-04 1U0L 1 JRNL REVDAT 1 07-SEP-04 1U0L 0 JRNL AUTH D.H.SHIN,Y.LOU,J.JANCARIK,H.YOKOTA,R.KIM,S.H.KIM JRNL TITL CRYSTAL STRUCTURE OF YJEQ FROM THERMOTOGA MARITIMA CONTAINS JRNL TITL 2 A CIRCULARLY PERMUTED GTPASE DOMAIN JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 13198 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15331784 JRNL DOI 10.1073/PNAS.0405202101 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 128783.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 28256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2801 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3843 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE : 0.4330 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 437 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6663 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.12000 REMARK 3 B22 (A**2) : 7.64000 REMARK 3 B33 (A**2) : -11.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.51 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.67 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.26 REMARK 3 BSOL : 21.97 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GDP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29551 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 50.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.2M KCL, 10MM GUANIDINE REMARK 280 HCL, 0.1M TRIS, PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.40950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.39900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.40950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 57.39900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 VAL A 191 REMARK 465 SER A 192 REMARK 465 GLU A 193 REMARK 465 VAL A 194 REMARK 465 SER A 195 REMARK 465 GLU A 196 REMARK 465 LYS A 197 REMARK 465 LEU A 198 REMARK 465 GLN A 199 REMARK 465 ARG A 200 REMARK 465 GLY A 201 REMARK 465 ARG A 202 REMARK 465 HIS A 203 REMARK 465 LYS A 294 REMARK 465 LYS A 295 REMARK 465 GLY B -5 REMARK 465 GLY B -4 REMARK 465 GLY B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 MET B 301 REMARK 465 ASN B 302 REMARK 465 VAL B 491 REMARK 465 SER B 492 REMARK 465 GLU B 493 REMARK 465 VAL B 494 REMARK 465 SER B 495 REMARK 465 GLU B 496 REMARK 465 LYS B 497 REMARK 465 LEU B 498 REMARK 465 GLN B 499 REMARK 465 ARG B 500 REMARK 465 GLY B 501 REMARK 465 ARG B 502 REMARK 465 HIS B 503 REMARK 465 LYS B 594 REMARK 465 LYS B 595 REMARK 465 GLY C -5 REMARK 465 GLY C -4 REMARK 465 GLY C -3 REMARK 465 GLY C -2 REMARK 465 GLY C -1 REMARK 465 GLY C 0 REMARK 465 MET C 601 REMARK 465 ASN C 602 REMARK 465 VAL C 791 REMARK 465 SER C 792 REMARK 465 GLU C 793 REMARK 465 VAL C 794 REMARK 465 SER C 795 REMARK 465 GLU C 796 REMARK 465 LYS C 797 REMARK 465 LEU C 798 REMARK 465 GLN C 799 REMARK 465 ARG C 800 REMARK 465 GLY C 801 REMARK 465 ARG C 802 REMARK 465 HIS C 803 REMARK 465 LYS C 894 REMARK 465 LYS C 895 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 74 C - N - CA ANGL. DEV. = -9.3 DEGREES REMARK 500 PRO A 91 C - N - CA ANGL. DEV. = -12.3 DEGREES REMARK 500 PRO A 261 C - N - CA ANGL. DEV. = 13.3 DEGREES REMARK 500 PRO B 374 C - N - CA ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO C 674 C - N - CA ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO C 861 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 4 121.12 -39.15 REMARK 500 SER A 14 49.88 30.24 REMARK 500 GLU A 23 -98.52 -62.31 REMARK 500 GLU A 55 -23.17 -37.21 REMARK 500 THR A 56 30.38 -70.48 REMARK 500 SER A 58 -130.85 55.92 REMARK 500 THR A 72 -104.05 -97.76 REMARK 500 LYS A 73 -83.25 -22.20 REMARK 500 LYS A 89 -150.57 -98.23 REMARK 500 MET A 90 -106.58 18.76 REMARK 500 GLU A 92 97.72 53.86 REMARK 500 GLU A 109 73.54 50.15 REMARK 500 PRO A 185 126.95 -38.05 REMARK 500 LEU A 228 57.75 30.04 REMARK 500 ASN A 231 -33.27 -140.77 REMARK 500 ASP A 232 4.49 -68.20 REMARK 500 LYS A 243 -66.18 -21.16 REMARK 500 ASP A 254 70.47 57.70 REMARK 500 VAL A 258 -87.11 -95.00 REMARK 500 GLU A 260 125.69 -28.87 REMARK 500 PRO A 261 -36.18 -39.16 REMARK 500 ARG A 292 89.74 -177.71 REMARK 500 GLU B 323 -159.87 -74.17 REMARK 500 LYS B 335 42.89 -106.02 REMARK 500 ASN B 340 42.06 -59.00 REMARK 500 ASP B 354 76.83 -102.12 REMARK 500 GLU B 355 -29.29 -32.37 REMARK 500 THR B 356 42.86 -66.48 REMARK 500 SER B 358 -137.12 74.16 REMARK 500 THR B 372 -90.52 -59.65 REMARK 500 LYS B 373 -99.28 -52.37 REMARK 500 ASP B 380 -60.17 -97.13 REMARK 500 LYS B 389 -74.11 -117.73 REMARK 500 MET B 390 -86.00 -62.48 REMARK 500 GLU B 392 87.49 70.83 REMARK 500 ASP B 423 -157.12 -96.87 REMARK 500 LYS B 449 -70.51 -81.64 REMARK 500 LYS B 462 127.00 -39.65 REMARK 500 ALA B 508 -168.15 -65.14 REMARK 500 PHE B 515 15.10 -66.10 REMARK 500 PHE B 525 47.72 -47.11 REMARK 500 ILE B 530 73.26 -115.54 REMARK 500 PHE B 551 -73.23 -56.02 REMARK 500 ASP B 554 71.14 51.95 REMARK 500 VAL B 558 -88.81 -94.84 REMARK 500 ARG B 592 97.49 175.61 REMARK 500 SER C 611 -177.27 -176.65 REMARK 500 SER C 614 46.92 35.32 REMARK 500 GLU C 623 -156.26 -68.24 REMARK 500 THR C 624 75.07 -68.12 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 298 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 250 SG REMARK 620 2 CYS A 255 SG 121.3 REMARK 620 3 HIS A 257 ND1 93.5 127.9 REMARK 620 4 CYS A 263 SG 86.1 128.1 87.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 598 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 550 SG REMARK 620 2 CYS B 555 SG 120.5 REMARK 620 3 HIS B 557 ND1 103.6 108.5 REMARK 620 4 CYS B 563 SG 108.4 109.9 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 898 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 850 SG REMARK 620 2 CYS C 855 SG 129.1 REMARK 620 3 HIS C 857 ND1 99.5 106.7 REMARK 620 4 CYS C 863 SG 119.2 106.8 83.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 598 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 898 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 599 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP C 899 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BSGCAIR31221 RELATED DB: TARGETDB DBREF 1U0L A 1 295 UNP Q9X242 ENGC_THEMA 1 295 DBREF 1U0L B 301 595 UNP Q9X242 ENGC_THEMA 1 295 DBREF 1U0L C 601 895 UNP Q9X242 ENGC_THEMA 1 295 SEQADV 1U0L GLY A -5 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY A -4 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY A -3 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY A -2 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY A -1 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY A 0 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY B -5 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY B -4 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY B -3 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY B -2 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY B -1 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY B 0 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY C -5 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY C -4 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY C -3 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY C -2 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY C -1 UNP Q9X242 CLONING ARTIFACT SEQADV 1U0L GLY C 0 UNP Q9X242 CLONING ARTIFACT SEQRES 1 A 301 GLY GLY GLY GLY GLY GLY MET ASN LEU ARG ARG ARG GLY SEQRES 2 A 301 ILE VAL VAL SER PHE HIS SER ASN MET VAL THR VAL GLU SEQRES 3 A 301 ASP GLU GLU THR GLY GLU ARG ILE LEU CYS LYS LEU ARG SEQRES 4 A 301 GLY LYS PHE ARG LEU GLN ASN LEU LYS ILE TYR VAL GLY SEQRES 5 A 301 ASP ARG VAL GLU TYR THR PRO ASP GLU THR GLY SER GLY SEQRES 6 A 301 VAL ILE GLU ASN VAL LEU HIS ARG LYS ASN LEU LEU THR SEQRES 7 A 301 LYS PRO HIS VAL ALA ASN VAL ASP GLN VAL ILE LEU VAL SEQRES 8 A 301 VAL THR VAL LYS MET PRO GLU THR SER THR TYR ILE ILE SEQRES 9 A 301 ASP LYS PHE LEU VAL LEU ALA GLU LYS ASN GLU LEU GLU SEQRES 10 A 301 THR VAL MET VAL ILE ASN LYS MET ASP LEU TYR ASP GLU SEQRES 11 A 301 ASP ASP LEU ARG LYS VAL ARG GLU LEU GLU GLU ILE TYR SEQRES 12 A 301 SER GLY LEU TYR PRO ILE VAL LYS THR SER ALA LYS THR SEQRES 13 A 301 GLY MET GLY ILE GLU GLU LEU LYS GLU TYR LEU LYS GLY SEQRES 14 A 301 LYS ILE SER THR MET ALA GLY LEU SER GLY VAL GLY LYS SEQRES 15 A 301 SER SER LEU LEU ASN ALA ILE ASN PRO GLY LEU LYS LEU SEQRES 16 A 301 ARG VAL SER GLU VAL SER GLU LYS LEU GLN ARG GLY ARG SEQRES 17 A 301 HIS THR THR THR THR ALA GLN LEU LEU LYS PHE ASP PHE SEQRES 18 A 301 GLY GLY TYR VAL VAL ASP THR PRO GLY PHE ALA ASN LEU SEQRES 19 A 301 GLU ILE ASN ASP ILE GLU PRO GLU GLU LEU LYS HIS TYR SEQRES 20 A 301 PHE LYS GLU PHE GLY ASP LYS GLN CYS PHE PHE SER ASP SEQRES 21 A 301 CYS ASN HIS VAL ASP GLU PRO GLU CYS GLY VAL LYS GLU SEQRES 22 A 301 ALA VAL GLU ASN GLY GLU ILE ALA GLU SER ARG TYR GLU SEQRES 23 A 301 ASN TYR VAL LYS MET PHE TYR GLU LEU LEU GLY ARG ARG SEQRES 24 A 301 LYS LYS SEQRES 1 B 301 GLY GLY GLY GLY GLY GLY MET ASN LEU ARG ARG ARG GLY SEQRES 2 B 301 ILE VAL VAL SER PHE HIS SER ASN MET VAL THR VAL GLU SEQRES 3 B 301 ASP GLU GLU THR GLY GLU ARG ILE LEU CYS LYS LEU ARG SEQRES 4 B 301 GLY LYS PHE ARG LEU GLN ASN LEU LYS ILE TYR VAL GLY SEQRES 5 B 301 ASP ARG VAL GLU TYR THR PRO ASP GLU THR GLY SER GLY SEQRES 6 B 301 VAL ILE GLU ASN VAL LEU HIS ARG LYS ASN LEU LEU THR SEQRES 7 B 301 LYS PRO HIS VAL ALA ASN VAL ASP GLN VAL ILE LEU VAL SEQRES 8 B 301 VAL THR VAL LYS MET PRO GLU THR SER THR TYR ILE ILE SEQRES 9 B 301 ASP LYS PHE LEU VAL LEU ALA GLU LYS ASN GLU LEU GLU SEQRES 10 B 301 THR VAL MET VAL ILE ASN LYS MET ASP LEU TYR ASP GLU SEQRES 11 B 301 ASP ASP LEU ARG LYS VAL ARG GLU LEU GLU GLU ILE TYR SEQRES 12 B 301 SER GLY LEU TYR PRO ILE VAL LYS THR SER ALA LYS THR SEQRES 13 B 301 GLY MET GLY ILE GLU GLU LEU LYS GLU TYR LEU LYS GLY SEQRES 14 B 301 LYS ILE SER THR MET ALA GLY LEU SER GLY VAL GLY LYS SEQRES 15 B 301 SER SER LEU LEU ASN ALA ILE ASN PRO GLY LEU LYS LEU SEQRES 16 B 301 ARG VAL SER GLU VAL SER GLU LYS LEU GLN ARG GLY ARG SEQRES 17 B 301 HIS THR THR THR THR ALA GLN LEU LEU LYS PHE ASP PHE SEQRES 18 B 301 GLY GLY TYR VAL VAL ASP THR PRO GLY PHE ALA ASN LEU SEQRES 19 B 301 GLU ILE ASN ASP ILE GLU PRO GLU GLU LEU LYS HIS TYR SEQRES 20 B 301 PHE LYS GLU PHE GLY ASP LYS GLN CYS PHE PHE SER ASP SEQRES 21 B 301 CYS ASN HIS VAL ASP GLU PRO GLU CYS GLY VAL LYS GLU SEQRES 22 B 301 ALA VAL GLU ASN GLY GLU ILE ALA GLU SER ARG TYR GLU SEQRES 23 B 301 ASN TYR VAL LYS MET PHE TYR GLU LEU LEU GLY ARG ARG SEQRES 24 B 301 LYS LYS SEQRES 1 C 301 GLY GLY GLY GLY GLY GLY MET ASN LEU ARG ARG ARG GLY SEQRES 2 C 301 ILE VAL VAL SER PHE HIS SER ASN MET VAL THR VAL GLU SEQRES 3 C 301 ASP GLU GLU THR GLY GLU ARG ILE LEU CYS LYS LEU ARG SEQRES 4 C 301 GLY LYS PHE ARG LEU GLN ASN LEU LYS ILE TYR VAL GLY SEQRES 5 C 301 ASP ARG VAL GLU TYR THR PRO ASP GLU THR GLY SER GLY SEQRES 6 C 301 VAL ILE GLU ASN VAL LEU HIS ARG LYS ASN LEU LEU THR SEQRES 7 C 301 LYS PRO HIS VAL ALA ASN VAL ASP GLN VAL ILE LEU VAL SEQRES 8 C 301 VAL THR VAL LYS MET PRO GLU THR SER THR TYR ILE ILE SEQRES 9 C 301 ASP LYS PHE LEU VAL LEU ALA GLU LYS ASN GLU LEU GLU SEQRES 10 C 301 THR VAL MET VAL ILE ASN LYS MET ASP LEU TYR ASP GLU SEQRES 11 C 301 ASP ASP LEU ARG LYS VAL ARG GLU LEU GLU GLU ILE TYR SEQRES 12 C 301 SER GLY LEU TYR PRO ILE VAL LYS THR SER ALA LYS THR SEQRES 13 C 301 GLY MET GLY ILE GLU GLU LEU LYS GLU TYR LEU LYS GLY SEQRES 14 C 301 LYS ILE SER THR MET ALA GLY LEU SER GLY VAL GLY LYS SEQRES 15 C 301 SER SER LEU LEU ASN ALA ILE ASN PRO GLY LEU LYS LEU SEQRES 16 C 301 ARG VAL SER GLU VAL SER GLU LYS LEU GLN ARG GLY ARG SEQRES 17 C 301 HIS THR THR THR THR ALA GLN LEU LEU LYS PHE ASP PHE SEQRES 18 C 301 GLY GLY TYR VAL VAL ASP THR PRO GLY PHE ALA ASN LEU SEQRES 19 C 301 GLU ILE ASN ASP ILE GLU PRO GLU GLU LEU LYS HIS TYR SEQRES 20 C 301 PHE LYS GLU PHE GLY ASP LYS GLN CYS PHE PHE SER ASP SEQRES 21 C 301 CYS ASN HIS VAL ASP GLU PRO GLU CYS GLY VAL LYS GLU SEQRES 22 C 301 ALA VAL GLU ASN GLY GLU ILE ALA GLU SER ARG TYR GLU SEQRES 23 C 301 ASN TYR VAL LYS MET PHE TYR GLU LEU LEU GLY ARG ARG SEQRES 24 C 301 LYS LYS HET ZN A 298 1 HET GDP A 299 28 HET ZN B 598 1 HET GDP B 599 28 HET ZN C 898 1 HET GDP C 899 28 HETNAM ZN ZINC ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 4 ZN 3(ZN 2+) FORMUL 5 GDP 3(C10 H15 N5 O11 P2) FORMUL 10 HOH *56(H2 O) HELIX 1 1 GLY A 34 ARG A 37 5 4 HELIX 2 2 SER A 94 ASN A 108 1 15 HELIX 3 3 LYS A 118 TYR A 122 5 5 HELIX 4 4 ASP A 123 SER A 138 1 16 HELIX 5 5 GLY A 153 LYS A 162 1 10 HELIX 6 6 GLY A 175 ASN A 184 1 10 HELIX 7 7 GLU A 234 LYS A 239 1 6 HELIX 8 8 HIS A 240 PHE A 242 5 3 HELIX 9 9 CYS A 263 GLY A 272 1 10 HELIX 10 10 ALA A 275 GLY A 291 1 17 HELIX 11 11 SER B 394 ASN B 408 1 15 HELIX 12 12 LYS B 418 TYR B 422 5 5 HELIX 13 13 ASP B 423 SER B 438 1 16 HELIX 14 14 GLY B 453 LYS B 462 1 10 HELIX 15 15 GLY B 475 ALA B 482 1 8 HELIX 16 16 GLU B 534 LYS B 539 1 6 HELIX 17 17 HIS B 540 PHE B 542 5 3 HELIX 18 18 CYS B 563 ASN B 571 1 9 HELIX 19 19 ALA B 575 GLY B 591 1 17 HELIX 20 20 ASP C 654 SER C 658 5 5 HELIX 21 21 SER C 694 ASN C 708 1 15 HELIX 22 22 LYS C 718 TYR C 722 5 5 HELIX 23 23 ASP C 723 SER C 738 1 16 HELIX 24 24 GLY C 753 LYS C 762 1 10 HELIX 25 25 GLY C 775 ASN C 784 1 10 HELIX 26 26 GLU C 834 PHE C 842 5 9 HELIX 27 27 CYS C 863 GLY C 872 1 10 HELIX 28 28 ALA C 875 GLY C 891 1 17 SHEET 1 A 6 ARG A 5 HIS A 13 0 SHEET 2 A 6 MET A 16 ASP A 21 -1 O THR A 18 N SER A 11 SHEET 3 A 6 ARG A 27 LEU A 32 -1 O ILE A 28 N VAL A 19 SHEET 4 A 6 GLY A 59 VAL A 64 1 O ILE A 61 N LYS A 31 SHEET 5 A 6 ARG A 48 THR A 52 -1 N THR A 52 O VAL A 60 SHEET 6 A 6 ARG A 5 HIS A 13 -1 N GLY A 7 O VAL A 49 SHEET 1 B 2 LEU A 70 LEU A 71 0 SHEET 2 B 2 VAL A 76 ALA A 77 -1 O VAL A 76 N LEU A 71 SHEET 1 C 6 ILE A 143 LYS A 145 0 SHEET 2 C 6 GLU A 111 ILE A 116 1 N MET A 114 O VAL A 144 SHEET 3 C 6 GLN A 81 VAL A 86 1 N LEU A 84 O VAL A 115 SHEET 4 C 6 ILE A 165 ALA A 169 1 O THR A 167 N ILE A 83 SHEET 5 C 6 TYR A 218 VAL A 220 1 O TYR A 218 N SER A 166 SHEET 6 C 6 LEU A 210 LYS A 212 -1 N LEU A 211 O VAL A 219 SHEET 1 D 5 ARG B 327 CYS B 330 0 SHEET 2 D 5 MET B 316 ASP B 321 -1 N VAL B 319 O ILE B 328 SHEET 3 D 5 ARG B 305 HIS B 313 -1 N SER B 311 O THR B 318 SHEET 4 D 5 ARG B 348 THR B 352 -1 O VAL B 349 N GLY B 307 SHEET 5 D 5 VAL B 360 VAL B 364 -1 O VAL B 360 N THR B 352 SHEET 1 E 2 LEU B 370 LEU B 371 0 SHEET 2 E 2 VAL B 376 ALA B 377 -1 O VAL B 376 N LEU B 371 SHEET 1 F 6 ILE B 443 LYS B 445 0 SHEET 2 F 6 GLU B 411 ILE B 416 1 N MET B 414 O VAL B 444 SHEET 3 F 6 GLN B 381 VAL B 386 1 N LEU B 384 O VAL B 415 SHEET 4 F 6 ILE B 465 ALA B 469 1 O THR B 467 N ILE B 383 SHEET 5 F 6 TYR B 518 VAL B 520 1 O TYR B 518 N SER B 466 SHEET 6 F 6 LEU B 510 LYS B 512 -1 N LEU B 511 O VAL B 519 SHEET 1 G 5 ARG C 627 LEU C 629 0 SHEET 2 G 5 MET C 616 ASP C 621 -1 N VAL C 619 O ILE C 628 SHEET 3 G 5 ARG C 605 HIS C 613 -1 N SER C 611 O THR C 618 SHEET 4 G 5 ARG C 648 TYR C 651 -1 O VAL C 649 N GLY C 607 SHEET 5 G 5 ASN C 663 VAL C 664 -1 O ASN C 663 N GLU C 650 SHEET 1 H 2 LEU C 670 LEU C 671 0 SHEET 2 H 2 VAL C 676 ALA C 677 -1 O VAL C 676 N LEU C 671 SHEET 1 I 6 ILE C 743 LYS C 745 0 SHEET 2 I 6 GLU C 711 ILE C 716 1 N MET C 714 O VAL C 744 SHEET 3 I 6 GLN C 681 VAL C 686 1 N LEU C 684 O VAL C 715 SHEET 4 I 6 ILE C 765 ALA C 769 1 O THR C 767 N ILE C 683 SHEET 5 I 6 TYR C 818 VAL C 820 1 O TYR C 818 N SER C 766 SHEET 6 I 6 LEU C 810 LYS C 812 -1 N LEU C 811 O VAL C 819 LINK SG CYS A 250 ZN ZN A 298 1555 1555 2.26 LINK SG CYS A 255 ZN ZN A 298 1555 1555 2.32 LINK ND1 HIS A 257 ZN ZN A 298 1555 1555 2.39 LINK SG CYS A 263 ZN ZN A 298 1555 1555 2.38 LINK SG CYS B 550 ZN ZN B 598 1555 1555 2.46 LINK SG CYS B 555 ZN ZN B 598 1555 1555 2.48 LINK ND1 HIS B 557 ZN ZN B 598 1555 1555 2.22 LINK SG CYS B 563 ZN ZN B 598 1555 1555 2.17 LINK SG CYS C 850 ZN ZN C 898 1555 1555 2.43 LINK SG CYS C 855 ZN ZN C 898 1555 1555 2.35 LINK ND1 HIS C 857 ZN ZN C 898 1555 1555 2.28 LINK SG CYS C 863 ZN ZN C 898 1555 1555 2.28 SITE 1 AC1 4 CYS A 250 CYS A 255 HIS A 257 CYS A 263 SITE 1 AC2 4 CYS B 550 CYS B 555 HIS B 557 CYS B 563 SITE 1 AC3 4 CYS C 850 CYS C 855 HIS C 857 CYS C 863 SITE 1 AC4 14 ASN A 117 LYS A 118 ASP A 120 LEU A 121 SITE 2 AC4 14 SER A 147 ALA A 148 LYS A 149 GLY A 173 SITE 3 AC4 14 VAL A 174 GLY A 175 LYS A 176 SER A 177 SITE 4 AC4 14 SER A 178 LEU A 189 SITE 1 AC5 13 ASN B 417 LYS B 418 ASP B 420 LEU B 421 SITE 2 AC5 13 SER B 447 ALA B 448 LYS B 449 GLY B 473 SITE 3 AC5 13 VAL B 474 GLY B 475 LYS B 476 SER B 477 SITE 4 AC5 13 SER B 478 SITE 1 AC6 16 VAL A 269 GLU A 270 ASN A 271 ASN C 717 SITE 2 AC6 16 LYS C 718 ASP C 720 LEU C 721 SER C 747 SITE 3 AC6 16 ALA C 748 SER C 772 GLY C 773 VAL C 774 SITE 4 AC6 16 GLY C 775 LYS C 776 SER C 777 SER C 778 CRYST1 142.819 114.798 77.088 90.00 105.72 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007002 0.000000 0.001971 0.00000 SCALE2 0.000000 0.008711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013476 0.00000