HEADER ISOMERASE, LYASE 16-JUL-04 1U1V TITLE STRUCTURE AND FUNCTION OF PHENAZINE-BIOSYNTHESIS PROTEIN PHZF FROM TITLE 2 PSEUDOMONAS FLUORESCENS 2-79 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENAZINE BIOSYNTHESIS PROTEIN PHZF; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294; SOURCE 4 GENE: PHZF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYS S; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PHENAZINE BIOSYNTHESIS, ISOMERASE, OPEN FORM, ACID/BASE CATALYSIS, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR W.BLANKENFELDT,A.P.KUZIN,T.SKARINA,Y.KORNIYENKO,L.TONG,P.BAYER, AUTHOR 2 P.JANNING,L.S.THOMASHOW,D.V.MAVRODI REVDAT 4 13-JUL-11 1U1V 1 VERSN REVDAT 3 24-FEB-09 1U1V 1 VERSN REVDAT 2 23-NOV-04 1U1V 1 JRNL REVDAT 1 02-NOV-04 1U1V 0 JRNL AUTH W.BLANKENFELDT,A.P.KUZIN,T.SKARINA,Y.KORNIYENKO,L.TONG, JRNL AUTH 2 P.BAYER,P.JANNING,L.S.THOMASHOW,D.V.MAVRODI JRNL TITL STRUCTURE AND FUNCTION OF THE PHENAZINE BIOSYNTHETIC PROTEIN JRNL TITL 2 PHZF FROM PSEUDOMONAS FLUORESCENS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 16431 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15545603 JRNL DOI 10.1073/PNAS.0407371101 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 30304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1633 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1859 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1490 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.1730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2119 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 331 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.425 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2220 ; 0.025 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2060 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3021 ; 1.562 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4767 ; 0.918 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 6.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2479 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 458 ; 0.019 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 378 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2392 ; 0.257 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1346 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 217 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.355 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.227 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1392 ; 0.963 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2248 ; 1.765 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 828 ; 3.160 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 773 ; 5.044 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 278 REMARK 3 RESIDUE RANGE : A 401 A 402 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2660 22.2120 16.4740 REMARK 3 T TENSOR REMARK 3 T11: 0.0329 T22: 0.0063 REMARK 3 T33: 0.0203 T12: -0.0087 REMARK 3 T13: -0.0075 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.0211 L22: 0.3854 REMARK 3 L33: 0.1697 L12: -0.0870 REMARK 3 L13: 0.0060 L23: -0.1775 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: -0.0033 S13: -0.0066 REMARK 3 S21: -0.0132 S22: 0.0091 S23: 0.0192 REMARK 3 S31: 0.0002 S32: 0.0001 S33: -0.0034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1U1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-04. REMARK 100 THE RCSB ID CODE IS RCSB023141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31965 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 20.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 27.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 15.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26800 REMARK 200 FOR SHELL : 9.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-CITRATE, 0.2M AMMONIUM REMARK 280 SULPHATE, 10% (W/V) PEG 3350, PH 5.6, TEMPERATURE 292K, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.13333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.13333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.26667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 528 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 569 O HOH A 828 1.88 REMARK 500 O HOH A 583 O HOH A 826 2.00 REMARK 500 OE1 GLU A 106 O HOH A 744 2.10 REMARK 500 O HOH A 566 O HOH A 689 2.11 REMARK 500 O HOH A 720 O HOH A 832 2.12 REMARK 500 O HOH A 655 O HOH A 824 2.14 REMARK 500 O HOH A 648 O HOH A 823 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 741 O HOH A 827 1565 2.11 REMARK 500 O HOH A 654 O HOH A 829 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 34 SE MSE A 34 CE -0.817 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 53 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 57 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 54 39.21 -140.24 REMARK 500 ASN A 151 32.01 -142.72 REMARK 500 ALA A 190 144.63 -170.05 REMARK 500 GLN A 258 80.35 -151.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 691 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH A 801 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 809 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH A 820 DISTANCE = 5.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BWZ RELATED DB: PDB REMARK 900 DIAMINOPIMELATE EPIMERASE REMARK 900 RELATED ID: 1SDJ RELATED DB: PDB REMARK 900 YDDE E.COLI REMARK 900 RELATED ID: 1S7J RELATED DB: PDB REMARK 900 PHENAZINE-BIOSYNTHESIS PROTEIN FROM E.FAECALIS REMARK 900 RELATED ID: 1U1W RELATED DB: PDB REMARK 900 RELATED ID: 1U1X RELATED DB: PDB DBREF 1U1V A 1 278 UNP Q51792 PHZF_PSEFL 1 278 SEQADV 1U1V MSE A -19 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V GLY A -18 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V SER A -17 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V SER A -16 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V HIS A -15 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V HIS A -14 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V HIS A -13 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V HIS A -12 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V HIS A -11 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V HIS A -10 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V SER A -9 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V SER A -8 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V GLY A -7 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V LEU A -6 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V VAL A -5 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V PRO A -4 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V ARG A -3 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V GLY A -2 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V SER A -1 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V HIS A 0 UNP Q51792 CLONING ARTIFACT SEQADV 1U1V MSE A 1 UNP Q51792 MET 1 MODIFIED RESIDUE SEQADV 1U1V MSE A 34 UNP Q51792 MET 34 MODIFIED RESIDUE SEQADV 1U1V MSE A 41 UNP Q51792 MET 41 MODIFIED RESIDUE SEQADV 1U1V MSE A 98 UNP Q51792 MET 98 MODIFIED RESIDUE SEQADV 1U1V MSE A 117 UNP Q51792 MET 117 MODIFIED RESIDUE SEQADV 1U1V MSE A 182 UNP Q51792 MET 182 MODIFIED RESIDUE SEQADV 1U1V MSE A 198 UNP Q51792 MET 198 MODIFIED RESIDUE SEQADV 1U1V MSE A 248 UNP Q51792 MET 248 MODIFIED RESIDUE SEQRES 1 A 298 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 298 LEU VAL PRO ARG GLY SER HIS MSE HIS ASN TYR VAL ILE SEQRES 3 A 298 ILE ASP ALA PHE ALA SER VAL PRO LEU GLU GLY ASN PRO SEQRES 4 A 298 VAL ALA VAL PHE PHE ASP ALA ASP ASP LEU PRO PRO ALA SEQRES 5 A 298 GLN MSE GLN ARG ILE ALA ARG GLU MSE ASN LEU SER GLU SEQRES 6 A 298 SER THR PHE VAL LEU LYS PRO ARG ASN GLY GLY ASP ALA SEQRES 7 A 298 LEU ILE ARG ILE PHE THR PRO VAL ASN GLU LEU PRO PHE SEQRES 8 A 298 ALA GLY HIS PRO LEU LEU GLY THR ALA ILE ALA LEU GLY SEQRES 9 A 298 ALA HIS THR ASP ASN HIS ARG LEU TYR LEU GLU THR GLN SEQRES 10 A 298 MSE GLY THR ILE ALA PHE GLU LEU GLU ARG GLN ASN GLY SEQRES 11 A 298 SER VAL ILE ALA ALA SER MSE ASP GLN PRO ILE PRO THR SEQRES 12 A 298 TRP THR ALA LEU GLY ARG ASP ALA GLU LEU LEU LYS ALA SEQRES 13 A 298 LEU GLY ILE SER ASP SER THR PHE PRO ILE GLU ILE TYR SEQRES 14 A 298 HIS ASN GLY PRO ARG HIS VAL PHE VAL GLY LEU PRO SER SEQRES 15 A 298 ILE ASP ALA LEU SER ALA LEU HIS PRO ASP HIS ARG ALA SEQRES 16 A 298 LEU SER ASN PHE HIS ASP MSE ALA ILE ASN CYS PHE ALA SEQRES 17 A 298 GLY ALA GLY ARG ARG TRP ARG SER ARG MSE PHE SER PRO SEQRES 18 A 298 ALA TYR GLY VAL VAL GLU ASP ALA ALA THR GLY SER ALA SEQRES 19 A 298 ALA GLY PRO LEU ALA ILE HIS LEU ALA ARG HIS GLY GLN SEQRES 20 A 298 ILE GLU PHE GLY GLN PRO VAL GLU ILE LEU GLN GLY VAL SEQRES 21 A 298 GLU ILE GLY ARG PRO SER LEU MSE PHE ALA LYS ALA GLU SEQRES 22 A 298 GLY ARG ALA GLU GLN LEU THR ARG VAL GLU VAL SER GLY SEQRES 23 A 298 ASN GLY VAL THR PHE GLY ARG GLY THR ILE VAL LEU MODRES 1U1V MSE A 1 MET SELENOMETHIONINE MODRES 1U1V MSE A 34 MET SELENOMETHIONINE MODRES 1U1V MSE A 41 MET SELENOMETHIONINE MODRES 1U1V MSE A 98 MET SELENOMETHIONINE MODRES 1U1V MSE A 117 MET SELENOMETHIONINE MODRES 1U1V MSE A 182 MET SELENOMETHIONINE MODRES 1U1V MSE A 198 MET SELENOMETHIONINE MODRES 1U1V MSE A 248 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 34 8 HET MSE A 41 8 HET MSE A 98 8 HET MSE A 117 12 HET MSE A 182 8 HET MSE A 198 8 HET MSE A 248 8 HET SO4 A 401 5 HET SO4 A 402 5 HET GOL A 501 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *331(H2 O) HELIX 1 1 ASP A 25 LEU A 29 5 5 HELIX 2 2 PRO A 30 ASN A 42 1 13 HELIX 3 3 ALA A 72 GLY A 84 1 13 HELIX 4 4 ALA A 85 THR A 87 5 3 HELIX 5 5 ARG A 129 GLY A 138 1 10 HELIX 6 6 SER A 162 LEU A 169 1 8 HELIX 7 7 ASP A 172 SER A 177 1 6 HELIX 8 8 THR A 211 HIS A 225 1 15 SHEET 1 A10 THR A 123 ALA A 126 0 SHEET 2 A10 GLU A 147 HIS A 150 -1 O ILE A 148 N THR A 125 SHEET 3 A10 ARG A 154 GLY A 159 -1 O HIS A 155 N TYR A 149 SHEET 4 A10 ALA A 183 ALA A 190 1 O ASN A 185 N VAL A 156 SHEET 5 A10 ARG A 193 SER A 200 -1 O ARG A 195 N ALA A 188 SHEET 6 A10 VAL A 205 ASP A 208 -1 O VAL A 205 N SER A 200 SHEET 7 A10 ARG A 193 SER A 200 -1 N SER A 200 O VAL A 205 SHEET 8 A10 VAL A 234 GLN A 238 1 O GLU A 235 N TRP A 194 SHEET 9 A10 SER A 246 ARG A 255 -1 O MSE A 248 N ILE A 236 SHEET 10 A10 GLN A 258 ILE A 276 -1 O GLU A 263 N LYS A 251 SHEET 1 B10 HIS A 2 ALA A 9 0 SHEET 2 B10 ASN A 18 PHE A 23 -1 O VAL A 22 N VAL A 5 SHEET 3 B10 SER A 46 LEU A 50 1 O THR A 47 N ALA A 21 SHEET 4 B10 ALA A 58 PHE A 63 -1 O LEU A 59 N LEU A 50 SHEET 5 B10 GLU A 68 LEU A 69 -1 O LEU A 69 N ILE A 62 SHEET 6 B10 ALA A 58 PHE A 63 -1 N ILE A 62 O LEU A 69 SHEET 7 B10 ARG A 91 THR A 96 1 O GLU A 95 N ALA A 58 SHEET 8 B10 GLY A 99 GLN A 108 -1 O ILE A 101 N LEU A 94 SHEET 9 B10 SER A 111 ASP A 118 -1 O ALA A 114 N GLU A 106 SHEET 10 B10 GLN A 258 ILE A 276 -1 O VAL A 264 N MSE A 117 LINK C MSE A 1 N HIS A 2 1555 1555 1.33 LINK C GLN A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N GLN A 35 1555 1555 1.33 LINK C GLU A 40 N MSE A 41 1555 1555 1.32 LINK C MSE A 41 N ASN A 42 1555 1555 1.34 LINK C GLN A 97 N MSE A 98 1555 1555 1.31 LINK C MSE A 98 N GLY A 99 1555 1555 1.33 LINK C SER A 116 N MSE A 117 1555 1555 1.34 LINK C MSE A 117 N ASP A 118 1555 1555 1.34 LINK C ASP A 181 N MSE A 182 1555 1555 1.34 LINK C MSE A 182 N ALA A 183 1555 1555 1.32 LINK C ARG A 197 N MSE A 198 1555 1555 1.34 LINK C MSE A 198 N PHE A 199 1555 1555 1.33 LINK C LEU A 247 N MSE A 248 1555 1555 1.32 LINK C MSE A 248 N PHE A 249 1555 1555 1.32 SITE 1 AC1 10 ALA A 72 GLY A 73 HIS A 74 PRO A 75 SITE 2 AC1 10 ALA A 210 THR A 211 GLY A 212 SER A 213 SITE 3 AC1 10 HOH A 531 HOH A 716 SITE 1 AC2 4 HIS A 90 ARG A 129 ARG A 154 MSE A 182 SITE 1 AC3 4 LEU A 50 LYS A 51 LEU A 83 HOH A 546 CRYST1 56.260 56.260 156.400 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017775 0.010262 0.000000 0.00000 SCALE2 0.000000 0.020524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006394 0.00000 HETATM 1 N MSE A 1 13.400 48.215 3.146 1.00 18.39 N HETATM 2 CA MSE A 1 14.400 47.122 2.854 1.00 17.84 C HETATM 3 C MSE A 1 14.848 46.469 4.152 1.00 16.00 C HETATM 4 O MSE A 1 14.690 47.060 5.234 1.00 16.31 O HETATM 5 CB MSE A 1 15.580 47.666 2.094 1.00 19.07 C HETATM 6 CG MSE A 1 15.118 48.292 0.794 1.00 28.38 C HETATM 7 SE MSE A 1 16.679 48.840 -0.299 1.00 49.13 SE HETATM 8 CE MSE A 1 16.886 47.221 -1.483 1.00 43.30 C