data_1U2B # _entry.id 1U2B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1U2B pdb_00001u2b 10.2210/pdb1u2b/pdb RCSB RCSB023156 ? ? WWPDB D_1000023156 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1U27 . unspecified PDB 1U29 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1U2B _pdbx_database_status.recvd_initial_deposition_date 2004-07-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cronin, T.C.' 1 'DiNitto, J.P.' 2 'Czech, M.P.' 3 'Lambright, D.G.' 4 # _citation.id primary _citation.title 'Structural determinants of phosphoinositide selectivity in splice variants of Grp1 family PH domains' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 23 _citation.page_first 3711 _citation.page_last 3720 _citation.year 2004 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15359279 _citation.pdbx_database_id_DOI 10.1038/sj.emboj.7600388 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cronin, T.C.' 1 ? primary 'DiNitto, J.P.' 2 ? primary 'Czech, M.P.' 3 ? primary 'Lambright, D.G.' 4 ? # _cell.entry_id 1U2B _cell.length_a 40.794 _cell.length_b 107.514 _cell.length_c 37.359 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U2B _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytohesin 3' 16259.445 1 ? ? PH ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 76 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ARF nucleotide-binding site opener 3, ARNO3 protein, General receptor of phosphoinositides 1, Grp1, CLM-3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGHHHHHHGSTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFEL YNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYDM ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHGSTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFEL YNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYDM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 GLY n 1 10 SER n 1 11 THR n 1 12 PHE n 1 13 PHE n 1 14 ASN n 1 15 PRO n 1 16 ASP n 1 17 ARG n 1 18 GLU n 1 19 GLY n 1 20 TRP n 1 21 LEU n 1 22 LEU n 1 23 LYS n 1 24 LEU n 1 25 GLY n 1 26 GLY n 1 27 GLY n 1 28 ARG n 1 29 VAL n 1 30 LYS n 1 31 THR n 1 32 TRP n 1 33 LYS n 1 34 ARG n 1 35 ARG n 1 36 TRP n 1 37 PHE n 1 38 ILE n 1 39 LEU n 1 40 THR n 1 41 ASP n 1 42 ASN n 1 43 CYS n 1 44 LEU n 1 45 TYR n 1 46 TYR n 1 47 PHE n 1 48 GLU n 1 49 TYR n 1 50 THR n 1 51 THR n 1 52 ASP n 1 53 LYS n 1 54 GLU n 1 55 PRO n 1 56 ARG n 1 57 GLY n 1 58 ILE n 1 59 ILE n 1 60 PRO n 1 61 LEU n 1 62 GLU n 1 63 ASN n 1 64 LEU n 1 65 SER n 1 66 ILE n 1 67 ARG n 1 68 GLU n 1 69 VAL n 1 70 GLU n 1 71 ASP n 1 72 PRO n 1 73 ARG n 1 74 LYS n 1 75 PRO n 1 76 ASN n 1 77 CYS n 1 78 PHE n 1 79 GLU n 1 80 LEU n 1 81 TYR n 1 82 ASN n 1 83 PRO n 1 84 SER n 1 85 HIS n 1 86 LYS n 1 87 GLY n 1 88 GLN n 1 89 VAL n 1 90 ILE n 1 91 LYS n 1 92 ALA n 1 93 CYS n 1 94 LYS n 1 95 THR n 1 96 GLU n 1 97 ALA n 1 98 ASP n 1 99 GLY n 1 100 ARG n 1 101 VAL n 1 102 VAL n 1 103 GLU n 1 104 GLY n 1 105 ASN n 1 106 HIS n 1 107 VAL n 1 108 VAL n 1 109 TYR n 1 110 ARG n 1 111 ILE n 1 112 SER n 1 113 ALA n 1 114 PRO n 1 115 SER n 1 116 PRO n 1 117 GLU n 1 118 GLU n 1 119 LYS n 1 120 GLU n 1 121 GLU n 1 122 TRP n 1 123 MET n 1 124 LYS n 1 125 SER n 1 126 ILE n 1 127 LYS n 1 128 ALA n 1 129 SER n 1 130 ILE n 1 131 SER n 1 132 ARG n 1 133 ASP n 1 134 PRO n 1 135 PHE n 1 136 TYR n 1 137 ASP n 1 138 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'Pscd3, Grp1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CYH3_MOUSE _struct_ref.pdbx_db_accession O08967 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TFFNPDREGWLLKLGG-RVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVI KACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYDM ; _struct_ref.pdbx_align_begin 261 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1U2B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 138 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O08967 _struct_ref_seq.db_align_beg 261 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 388 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 261 _struct_ref_seq.pdbx_auth_seq_align_end 388 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1U2B MET A 1 ? UNP O08967 ? ? 'cloning artifact' 251 1 1 1U2B GLY A 2 ? UNP O08967 ? ? 'cloning artifact' 252 2 1 1U2B HIS A 3 ? UNP O08967 ? ? 'cloning artifact' 253 3 1 1U2B HIS A 4 ? UNP O08967 ? ? 'cloning artifact' 254 4 1 1U2B HIS A 5 ? UNP O08967 ? ? 'cloning artifact' 255 5 1 1U2B HIS A 6 ? UNP O08967 ? ? 'cloning artifact' 256 6 1 1U2B HIS A 7 ? UNP O08967 ? ? 'cloning artifact' 257 7 1 1U2B HIS A 8 ? UNP O08967 ? ? 'cloning artifact' 258 8 1 1U2B GLY A 9 ? UNP O08967 ? ? 'cloning artifact' 259 9 1 1U2B SER A 10 ? UNP O08967 ? ? 'cloning artifact' 260 10 1 1U2B GLY A 27 ? UNP O08967 ? 277 insertion 277 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1U2B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_percent_sol 55.0 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pdbx_details 'PEG 4000, sodium acetate, 10% glycerol, lithium sulfate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2000-09-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 1U2B _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.8 _reflns.d_resolution_low 50.0 _reflns.number_all 15937 _reflns.number_obs 15719 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.85 _reflns_shell.percent_possible_all 96.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1U2B _refine.ls_number_reflns_obs 14899 _refine.ls_number_reflns_all 15086 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 98.76 _refine.ls_R_factor_obs 0.21897 _refine.ls_R_factor_all 0.21897 _refine.ls_R_factor_R_work 0.21786 _refine.ls_R_factor_R_free 0.24004 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 784 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.B_iso_mean 23.028 _refine.aniso_B[1][1] -0.60 _refine.aniso_B[2][2] 0.82 _refine.aniso_B[3][3] -0.23 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;Hydrogens have been added in the riding positions. Several atoms for residues 280, 323, 334, 335, 336, 353, 355, 370 and 387 were modeled into this structure with zero occupancy because they are part of the PH domain and were not deleted or mutated. ; _refine.pdbx_starting_model 1FGY _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.128 _refine.pdbx_overall_ESU_R_Free 0.119 _refine.overall_SU_ML 0.086 _refine.overall_SU_B 2.746 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1057 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 1143 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1032 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 918 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.136 1.956 ? 1401 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.724 3.000 ? 2139 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.985 5.000 ? 122 'X-RAY DIFFRACTION' ? r_chiral_restr 0.070 0.200 ? 146 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1124 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 216 'X-RAY DIFFRACTION' ? r_nbd_refined 0.190 0.200 ? 170 'X-RAY DIFFRACTION' ? r_nbd_other 0.243 0.200 ? 976 'X-RAY DIFFRACTION' ? r_nbtor_other 0.082 0.200 ? 619 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.170 0.200 ? 55 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.158 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.267 0.200 ? 52 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.096 0.200 ? 4 'X-RAY DIFFRACTION' ? r_mcbond_it 0.766 1.500 ? 621 'X-RAY DIFFRACTION' ? r_mcangle_it 1.424 2.000 ? 1001 'X-RAY DIFFRACTION' ? r_scbond_it 1.618 3.000 ? 411 'X-RAY DIFFRACTION' ? r_scangle_it 2.660 4.500 ? 400 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.846 _refine_ls_shell.number_reflns_R_work 1052 _refine_ls_shell.R_factor_R_work 0.27 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.22 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1U2B _struct.title 'Triglycine variant of the Grp1 Pleckstrin Homology Domain unliganded' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1U2B _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.text 'PH domain, lipid binding, phosphoinositides, LIPID BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 115 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASP _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 133 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 365 _struct_conf.end_auth_comp_id ASP _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 383 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 65 ? GLU A 68 ? SER A 315 GLU A 318 A 2 CYS A 77 ? TYR A 81 ? CYS A 327 TYR A 331 A 3 VAL A 108 ? SER A 112 ? VAL A 358 SER A 362 A 4 ARG A 17 ? LEU A 24 ? ARG A 267 LEU A 274 A 5 TRP A 32 ? THR A 40 ? TRP A 282 THR A 290 A 6 CYS A 43 ? PHE A 47 ? CYS A 293 PHE A 297 A 7 GLY A 57 ? PRO A 60 ? GLY A 307 PRO A 310 A 8 CYS A 93 ? THR A 95 ? CYS A 343 THR A 345 A 9 VAL A 101 ? GLU A 103 ? VAL A 351 GLU A 353 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 67 ? N ARG A 317 O GLU A 79 ? O GLU A 329 A 2 3 N PHE A 78 ? N PHE A 328 O ILE A 111 ? O ILE A 361 A 3 4 O SER A 112 ? O SER A 362 N LEU A 22 ? N LEU A 272 A 4 5 N ARG A 17 ? N ARG A 267 O LEU A 39 ? O LEU A 289 A 5 6 N ILE A 38 ? N ILE A 288 O TYR A 45 ? O TYR A 295 A 6 7 N LEU A 44 ? N LEU A 294 O ILE A 59 ? O ILE A 309 A 7 8 N ILE A 58 ? N ILE A 308 O CYS A 93 ? O CYS A 343 A 8 9 N LYS A 94 ? N LYS A 344 O VAL A 102 ? O VAL A 352 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 501 ? 6 'BINDING SITE FOR RESIDUE SO4 A 501' AC2 Software A SO4 502 ? 6 'BINDING SITE FOR RESIDUE SO4 A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LYS A 23 ? LYS A 273 . ? 1_555 ? 2 AC1 6 LYS A 33 ? LYS A 283 . ? 1_555 ? 3 AC1 6 ARG A 35 ? ARG A 285 . ? 1_555 ? 4 AC1 6 TYR A 46 ? TYR A 296 . ? 1_555 ? 5 AC1 6 ARG A 56 ? ARG A 306 . ? 1_555 ? 6 AC1 6 SO4 C . ? SO4 A 502 . ? 1_555 ? 7 AC2 6 LYS A 23 ? LYS A 273 . ? 1_555 ? 8 AC2 6 GLY A 25 ? GLY A 275 . ? 1_555 ? 9 AC2 6 LYS A 94 ? LYS A 344 . ? 1_555 ? 10 AC2 6 HIS A 106 ? HIS A 356 . ? 1_555 ? 11 AC2 6 SO4 B . ? SO4 A 501 . ? 1_555 ? 12 AC2 6 HOH D . ? HOH A 541 . ? 1_555 ? # _database_PDB_matrix.entry_id 1U2B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1U2B _atom_sites.fract_transf_matrix[1][1] 0.024513 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009301 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026767 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 251 ? ? ? A . n A 1 2 GLY 2 252 ? ? ? A . n A 1 3 HIS 3 253 ? ? ? A . n A 1 4 HIS 4 254 ? ? ? A . n A 1 5 HIS 5 255 ? ? ? A . n A 1 6 HIS 6 256 ? ? ? A . n A 1 7 HIS 7 257 ? ? ? A . n A 1 8 HIS 8 258 ? ? ? A . n A 1 9 GLY 9 259 ? ? ? A . n A 1 10 SER 10 260 ? ? ? A . n A 1 11 THR 11 261 261 THR THR A . n A 1 12 PHE 12 262 262 PHE PHE A . n A 1 13 PHE 13 263 263 PHE PHE A . n A 1 14 ASN 14 264 264 ASN ASN A . n A 1 15 PRO 15 265 265 PRO PRO A . n A 1 16 ASP 16 266 266 ASP ASP A . n A 1 17 ARG 17 267 267 ARG ARG A . n A 1 18 GLU 18 268 268 GLU GLU A . n A 1 19 GLY 19 269 269 GLY GLY A . n A 1 20 TRP 20 270 270 TRP TRP A . n A 1 21 LEU 21 271 271 LEU LEU A . n A 1 22 LEU 22 272 272 LEU LEU A . n A 1 23 LYS 23 273 273 LYS LYS A . n A 1 24 LEU 24 274 274 LEU LEU A . n A 1 25 GLY 25 275 275 GLY GLY A . n A 1 26 GLY 26 276 276 GLY GLY A . n A 1 27 GLY 27 277 277 GLY GLY A . n A 1 28 ARG 28 278 278 ARG ARG A . n A 1 29 VAL 29 279 279 VAL VAL A . n A 1 30 LYS 30 280 280 LYS LYS A . n A 1 31 THR 31 281 281 THR THR A . n A 1 32 TRP 32 282 282 TRP TRP A . n A 1 33 LYS 33 283 283 LYS LYS A . n A 1 34 ARG 34 284 284 ARG ARG A . n A 1 35 ARG 35 285 285 ARG ARG A . n A 1 36 TRP 36 286 286 TRP TRP A . n A 1 37 PHE 37 287 287 PHE PHE A . n A 1 38 ILE 38 288 288 ILE ILE A . n A 1 39 LEU 39 289 289 LEU LEU A . n A 1 40 THR 40 290 290 THR THR A . n A 1 41 ASP 41 291 291 ASP ASP A . n A 1 42 ASN 42 292 292 ASN ASN A . n A 1 43 CYS 43 293 293 CYS CYS A . n A 1 44 LEU 44 294 294 LEU LEU A . n A 1 45 TYR 45 295 295 TYR TYR A . n A 1 46 TYR 46 296 296 TYR TYR A . n A 1 47 PHE 47 297 297 PHE PHE A . n A 1 48 GLU 48 298 298 GLU GLU A . n A 1 49 TYR 49 299 299 TYR TYR A . n A 1 50 THR 50 300 300 THR THR A . n A 1 51 THR 51 301 301 THR THR A . n A 1 52 ASP 52 302 302 ASP ASP A . n A 1 53 LYS 53 303 303 LYS LYS A . n A 1 54 GLU 54 304 304 GLU GLU A . n A 1 55 PRO 55 305 305 PRO PRO A . n A 1 56 ARG 56 306 306 ARG ARG A . n A 1 57 GLY 57 307 307 GLY GLY A . n A 1 58 ILE 58 308 308 ILE ILE A . n A 1 59 ILE 59 309 309 ILE ILE A . n A 1 60 PRO 60 310 310 PRO PRO A . n A 1 61 LEU 61 311 311 LEU LEU A . n A 1 62 GLU 62 312 312 GLU GLU A . n A 1 63 ASN 63 313 313 ASN ASN A . n A 1 64 LEU 64 314 314 LEU LEU A . n A 1 65 SER 65 315 315 SER SER A . n A 1 66 ILE 66 316 316 ILE ILE A . n A 1 67 ARG 67 317 317 ARG ARG A . n A 1 68 GLU 68 318 318 GLU GLU A . n A 1 69 VAL 69 319 319 VAL VAL A . n A 1 70 GLU 70 320 320 GLU GLU A . n A 1 71 ASP 71 321 321 ASP ASP A . n A 1 72 PRO 72 322 322 PRO PRO A . n A 1 73 ARG 73 323 323 ARG ARG A . n A 1 74 LYS 74 324 324 LYS LYS A . n A 1 75 PRO 75 325 325 PRO PRO A . n A 1 76 ASN 76 326 326 ASN ASN A . n A 1 77 CYS 77 327 327 CYS CYS A . n A 1 78 PHE 78 328 328 PHE PHE A . n A 1 79 GLU 79 329 329 GLU GLU A . n A 1 80 LEU 80 330 330 LEU LEU A . n A 1 81 TYR 81 331 331 TYR TYR A . n A 1 82 ASN 82 332 332 ASN ASN A . n A 1 83 PRO 83 333 333 PRO PRO A . n A 1 84 SER 84 334 334 SER SER A . n A 1 85 HIS 85 335 335 HIS HIS A . n A 1 86 LYS 86 336 336 LYS LYS A . n A 1 87 GLY 87 337 337 GLY GLY A . n A 1 88 GLN 88 338 338 GLN GLN A . n A 1 89 VAL 89 339 339 VAL VAL A . n A 1 90 ILE 90 340 340 ILE ILE A . n A 1 91 LYS 91 341 341 LYS LYS A . n A 1 92 ALA 92 342 342 ALA ALA A . n A 1 93 CYS 93 343 343 CYS CYS A . n A 1 94 LYS 94 344 344 LYS LYS A . n A 1 95 THR 95 345 345 THR THR A . n A 1 96 GLU 96 346 346 GLU GLU A . n A 1 97 ALA 97 347 347 ALA ALA A . n A 1 98 ASP 98 348 348 ASP ASP A . n A 1 99 GLY 99 349 349 GLY GLY A . n A 1 100 ARG 100 350 350 ARG ARG A . n A 1 101 VAL 101 351 351 VAL VAL A . n A 1 102 VAL 102 352 352 VAL VAL A . n A 1 103 GLU 103 353 353 GLU GLU A . n A 1 104 GLY 104 354 354 GLY GLY A . n A 1 105 ASN 105 355 355 ASN ASN A . n A 1 106 HIS 106 356 356 HIS HIS A . n A 1 107 VAL 107 357 357 VAL VAL A . n A 1 108 VAL 108 358 358 VAL VAL A . n A 1 109 TYR 109 359 359 TYR TYR A . n A 1 110 ARG 110 360 360 ARG ARG A . n A 1 111 ILE 111 361 361 ILE ILE A . n A 1 112 SER 112 362 362 SER SER A . n A 1 113 ALA 113 363 363 ALA ALA A . n A 1 114 PRO 114 364 364 PRO PRO A . n A 1 115 SER 115 365 365 SER SER A . n A 1 116 PRO 116 366 366 PRO PRO A . n A 1 117 GLU 117 367 367 GLU GLU A . n A 1 118 GLU 118 368 368 GLU GLU A . n A 1 119 LYS 119 369 369 LYS LYS A . n A 1 120 GLU 120 370 370 GLU GLU A . n A 1 121 GLU 121 371 371 GLU GLU A . n A 1 122 TRP 122 372 372 TRP TRP A . n A 1 123 MET 123 373 373 MET MET A . n A 1 124 LYS 124 374 374 LYS LYS A . n A 1 125 SER 125 375 375 SER SER A . n A 1 126 ILE 126 376 376 ILE ILE A . n A 1 127 LYS 127 377 377 LYS LYS A . n A 1 128 ALA 128 378 378 ALA ALA A . n A 1 129 SER 129 379 379 SER SER A . n A 1 130 ILE 130 380 380 ILE ILE A . n A 1 131 SER 131 381 381 SER SER A . n A 1 132 ARG 132 382 382 ARG ARG A . n A 1 133 ASP 133 383 383 ASP ASP A . n A 1 134 PRO 134 384 384 PRO PRO A . n A 1 135 PHE 135 385 385 PHE PHE A . n A 1 136 TYR 136 386 386 TYR TYR A . n A 1 137 ASP 137 387 387 ASP ASP A . n A 1 138 MET 138 388 388 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 501 501 SO4 SO4 A . C 2 SO4 1 502 502 SO4 SO4 A . D 3 HOH 1 503 1 HOH HOH A . D 3 HOH 2 504 2 HOH HOH A . D 3 HOH 3 505 4 HOH HOH A . D 3 HOH 4 506 5 HOH HOH A . D 3 HOH 5 507 6 HOH HOH A . D 3 HOH 6 508 7 HOH HOH A . D 3 HOH 7 509 9 HOH HOH A . D 3 HOH 8 510 10 HOH HOH A . D 3 HOH 9 511 11 HOH HOH A . D 3 HOH 10 512 12 HOH HOH A . D 3 HOH 11 513 14 HOH HOH A . D 3 HOH 12 514 15 HOH HOH A . D 3 HOH 13 515 16 HOH HOH A . D 3 HOH 14 516 17 HOH HOH A . D 3 HOH 15 517 18 HOH HOH A . D 3 HOH 16 518 20 HOH HOH A . D 3 HOH 17 519 21 HOH HOH A . D 3 HOH 18 520 22 HOH HOH A . D 3 HOH 19 521 23 HOH HOH A . D 3 HOH 20 522 24 HOH HOH A . D 3 HOH 21 523 25 HOH HOH A . D 3 HOH 22 524 26 HOH HOH A . D 3 HOH 23 525 27 HOH HOH A . D 3 HOH 24 526 30 HOH HOH A . D 3 HOH 25 527 31 HOH HOH A . D 3 HOH 26 528 33 HOH HOH A . D 3 HOH 27 529 35 HOH HOH A . D 3 HOH 28 530 36 HOH HOH A . D 3 HOH 29 531 37 HOH HOH A . D 3 HOH 30 532 38 HOH HOH A . D 3 HOH 31 533 39 HOH HOH A . D 3 HOH 32 534 40 HOH HOH A . D 3 HOH 33 535 41 HOH HOH A . D 3 HOH 34 536 43 HOH HOH A . D 3 HOH 35 537 44 HOH HOH A . D 3 HOH 36 538 45 HOH HOH A . D 3 HOH 37 539 48 HOH HOH A . D 3 HOH 38 540 50 HOH HOH A . D 3 HOH 39 541 51 HOH HOH A . D 3 HOH 40 542 55 HOH HOH A . D 3 HOH 41 543 56 HOH HOH A . D 3 HOH 42 544 66 HOH HOH A . D 3 HOH 43 545 67 HOH HOH A . D 3 HOH 44 546 68 HOH HOH A . D 3 HOH 45 547 69 HOH HOH A . D 3 HOH 46 548 76 HOH HOH A . D 3 HOH 47 549 77 HOH HOH A . D 3 HOH 48 550 84 HOH HOH A . D 3 HOH 49 551 86 HOH HOH A . D 3 HOH 50 552 87 HOH HOH A . D 3 HOH 51 553 88 HOH HOH A . D 3 HOH 52 554 94 HOH HOH A . D 3 HOH 53 555 99 HOH HOH A . D 3 HOH 54 556 107 HOH HOH A . D 3 HOH 55 557 109 HOH HOH A . D 3 HOH 56 558 114 HOH HOH A . D 3 HOH 57 559 115 HOH HOH A . D 3 HOH 58 560 117 HOH HOH A . D 3 HOH 59 561 118 HOH HOH A . D 3 HOH 60 562 122 HOH HOH A . D 3 HOH 61 563 130 HOH HOH A . D 3 HOH 62 564 133 HOH HOH A . D 3 HOH 63 565 153 HOH HOH A . D 3 HOH 64 566 157 HOH HOH A . D 3 HOH 65 567 171 HOH HOH A . D 3 HOH 66 568 174 HOH HOH A . D 3 HOH 67 569 178 HOH HOH A . D 3 HOH 68 570 193 HOH HOH A . D 3 HOH 69 571 202 HOH HOH A . D 3 HOH 70 572 238 HOH HOH A . D 3 HOH 71 573 243 HOH HOH A . D 3 HOH 72 574 304 HOH HOH A . D 3 HOH 73 575 329 HOH HOH A . D 3 HOH 74 576 491 HOH HOH A . D 3 HOH 75 577 492 HOH HOH A . D 3 HOH 76 578 493 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-02-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.19 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N A GLY 277 ? ? O A HOH 578 ? ? 0.74 2 1 CA A GLY 277 ? ? O A HOH 578 ? ? 1.36 3 1 O A VAL 279 ? ? N A LYS 280 ? ? 1.42 4 1 C A GLY 276 ? ? O A HOH 578 ? ? 1.94 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 VAL _pdbx_validate_rmsd_bond.auth_seq_id_1 279 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 LYS _pdbx_validate_rmsd_bond.auth_seq_id_2 280 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 0.418 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation -0.918 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A VAL 279 ? ? C A VAL 279 ? ? N A LYS 280 ? ? 136.85 117.20 19.65 2.20 Y 2 1 O A VAL 279 ? ? C A VAL 279 ? ? N A LYS 280 ? ? 101.99 122.70 -20.71 1.60 Y 3 1 C A VAL 279 ? ? N A LYS 280 ? ? CA A LYS 280 ? ? 140.47 121.70 18.77 2.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 313 ? ? 79.97 -13.06 2 1 ASP A 387 ? ? 56.40 71.47 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id GLY _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 275 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 20.33 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 VAL _pdbx_validate_polymer_linkage.auth_seq_id_1 279 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 LYS _pdbx_validate_polymer_linkage.auth_seq_id_2 280 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 0.42 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PHE 263 ? CG ? A PHE 13 CG 2 1 Y 1 A PHE 263 ? CD1 ? A PHE 13 CD1 3 1 Y 1 A PHE 263 ? CD2 ? A PHE 13 CD2 4 1 Y 1 A PHE 263 ? CE1 ? A PHE 13 CE1 5 1 Y 1 A PHE 263 ? CE2 ? A PHE 13 CE2 6 1 Y 1 A PHE 263 ? CZ ? A PHE 13 CZ 7 1 Y 0 A LYS 280 ? CG ? A LYS 30 CG 8 1 Y 0 A LYS 280 ? CD ? A LYS 30 CD 9 1 Y 0 A LYS 280 ? CE ? A LYS 30 CE 10 1 Y 0 A LYS 280 ? NZ ? A LYS 30 NZ 11 1 Y 0 A ARG 323 ? CG ? A ARG 73 CG 12 1 Y 0 A ARG 323 ? CD ? A ARG 73 CD 13 1 Y 0 A ARG 323 ? NE ? A ARG 73 NE 14 1 Y 0 A ARG 323 ? CZ ? A ARG 73 CZ 15 1 Y 0 A ARG 323 ? NH1 ? A ARG 73 NH1 16 1 Y 0 A ARG 323 ? NH2 ? A ARG 73 NH2 17 1 Y 0 A SER 334 ? OG ? A SER 84 OG 18 1 Y 0 A HIS 335 ? CG ? A HIS 85 CG 19 1 Y 0 A HIS 335 ? ND1 ? A HIS 85 ND1 20 1 Y 0 A HIS 335 ? CD2 ? A HIS 85 CD2 21 1 Y 0 A HIS 335 ? CE1 ? A HIS 85 CE1 22 1 Y 0 A HIS 335 ? NE2 ? A HIS 85 NE2 23 1 Y 0 A LYS 336 ? CG ? A LYS 86 CG 24 1 Y 0 A LYS 336 ? CD ? A LYS 86 CD 25 1 Y 0 A LYS 336 ? CE ? A LYS 86 CE 26 1 Y 0 A LYS 336 ? NZ ? A LYS 86 NZ 27 1 Y 0 A GLU 353 ? CG ? A GLU 103 CG 28 1 Y 0 A GLU 353 ? CD ? A GLU 103 CD 29 1 Y 0 A GLU 353 ? OE1 ? A GLU 103 OE1 30 1 Y 0 A GLU 353 ? OE2 ? A GLU 103 OE2 31 1 Y 0 A ASN 355 ? CG ? A ASN 105 CG 32 1 Y 0 A ASN 355 ? OD1 ? A ASN 105 OD1 33 1 Y 0 A ASN 355 ? ND2 ? A ASN 105 ND2 34 1 Y 0 A GLU 370 ? CG ? A GLU 120 CG 35 1 Y 0 A GLU 370 ? CD ? A GLU 120 CD 36 1 Y 0 A GLU 370 ? OE1 ? A GLU 120 OE1 37 1 Y 0 A GLU 370 ? OE2 ? A GLU 120 OE2 38 1 Y 0 A ASP 387 ? CG ? A ASP 137 CG 39 1 Y 0 A ASP 387 ? OD1 ? A ASP 137 OD1 40 1 Y 0 A ASP 387 ? OD2 ? A ASP 137 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 251 ? A MET 1 2 1 Y 1 A GLY 252 ? A GLY 2 3 1 Y 1 A HIS 253 ? A HIS 3 4 1 Y 1 A HIS 254 ? A HIS 4 5 1 Y 1 A HIS 255 ? A HIS 5 6 1 Y 1 A HIS 256 ? A HIS 6 7 1 Y 1 A HIS 257 ? A HIS 7 8 1 Y 1 A HIS 258 ? A HIS 8 9 1 Y 1 A GLY 259 ? A GLY 9 10 1 Y 1 A SER 260 ? A SER 10 11 1 Y 0 A GLY 276 ? A GLY 26 12 1 Y 0 A GLY 277 ? A GLY 27 13 1 Y 0 A ARG 278 ? A ARG 28 14 1 Y 0 A VAL 279 ? A VAL 29 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 SO4 S S N N 304 SO4 O1 O N N 305 SO4 O2 O N N 306 SO4 O3 O N N 307 SO4 O4 O N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 TRP N N N N 326 TRP CA C N S 327 TRP C C N N 328 TRP O O N N 329 TRP CB C N N 330 TRP CG C Y N 331 TRP CD1 C Y N 332 TRP CD2 C Y N 333 TRP NE1 N Y N 334 TRP CE2 C Y N 335 TRP CE3 C Y N 336 TRP CZ2 C Y N 337 TRP CZ3 C Y N 338 TRP CH2 C Y N 339 TRP OXT O N N 340 TRP H H N N 341 TRP H2 H N N 342 TRP HA H N N 343 TRP HB2 H N N 344 TRP HB3 H N N 345 TRP HD1 H N N 346 TRP HE1 H N N 347 TRP HE3 H N N 348 TRP HZ2 H N N 349 TRP HZ3 H N N 350 TRP HH2 H N N 351 TRP HXT H N N 352 TYR N N N N 353 TYR CA C N S 354 TYR C C N N 355 TYR O O N N 356 TYR CB C N N 357 TYR CG C Y N 358 TYR CD1 C Y N 359 TYR CD2 C Y N 360 TYR CE1 C Y N 361 TYR CE2 C Y N 362 TYR CZ C Y N 363 TYR OH O N N 364 TYR OXT O N N 365 TYR H H N N 366 TYR H2 H N N 367 TYR HA H N N 368 TYR HB2 H N N 369 TYR HB3 H N N 370 TYR HD1 H N N 371 TYR HD2 H N N 372 TYR HE1 H N N 373 TYR HE2 H N N 374 TYR HH H N N 375 TYR HXT H N N 376 VAL N N N N 377 VAL CA C N S 378 VAL C C N N 379 VAL O O N N 380 VAL CB C N N 381 VAL CG1 C N N 382 VAL CG2 C N N 383 VAL OXT O N N 384 VAL H H N N 385 VAL H2 H N N 386 VAL HA H N N 387 VAL HB H N N 388 VAL HG11 H N N 389 VAL HG12 H N N 390 VAL HG13 H N N 391 VAL HG21 H N N 392 VAL HG22 H N N 393 VAL HG23 H N N 394 VAL HXT H N N 395 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 SO4 S O1 doub N N 290 SO4 S O2 doub N N 291 SO4 S O3 sing N N 292 SO4 S O4 sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TRP N CA sing N N 310 TRP N H sing N N 311 TRP N H2 sing N N 312 TRP CA C sing N N 313 TRP CA CB sing N N 314 TRP CA HA sing N N 315 TRP C O doub N N 316 TRP C OXT sing N N 317 TRP CB CG sing N N 318 TRP CB HB2 sing N N 319 TRP CB HB3 sing N N 320 TRP CG CD1 doub Y N 321 TRP CG CD2 sing Y N 322 TRP CD1 NE1 sing Y N 323 TRP CD1 HD1 sing N N 324 TRP CD2 CE2 doub Y N 325 TRP CD2 CE3 sing Y N 326 TRP NE1 CE2 sing Y N 327 TRP NE1 HE1 sing N N 328 TRP CE2 CZ2 sing Y N 329 TRP CE3 CZ3 doub Y N 330 TRP CE3 HE3 sing N N 331 TRP CZ2 CH2 doub Y N 332 TRP CZ2 HZ2 sing N N 333 TRP CZ3 CH2 sing Y N 334 TRP CZ3 HZ3 sing N N 335 TRP CH2 HH2 sing N N 336 TRP OXT HXT sing N N 337 TYR N CA sing N N 338 TYR N H sing N N 339 TYR N H2 sing N N 340 TYR CA C sing N N 341 TYR CA CB sing N N 342 TYR CA HA sing N N 343 TYR C O doub N N 344 TYR C OXT sing N N 345 TYR CB CG sing N N 346 TYR CB HB2 sing N N 347 TYR CB HB3 sing N N 348 TYR CG CD1 doub Y N 349 TYR CG CD2 sing Y N 350 TYR CD1 CE1 sing Y N 351 TYR CD1 HD1 sing N N 352 TYR CD2 CE2 doub Y N 353 TYR CD2 HD2 sing N N 354 TYR CE1 CZ doub Y N 355 TYR CE1 HE1 sing N N 356 TYR CE2 CZ sing Y N 357 TYR CE2 HE2 sing N N 358 TYR CZ OH sing N N 359 TYR OH HH sing N N 360 TYR OXT HXT sing N N 361 VAL N CA sing N N 362 VAL N H sing N N 363 VAL N H2 sing N N 364 VAL CA C sing N N 365 VAL CA CB sing N N 366 VAL CA HA sing N N 367 VAL C O doub N N 368 VAL C OXT sing N N 369 VAL CB CG1 sing N N 370 VAL CB CG2 sing N N 371 VAL CB HB sing N N 372 VAL CG1 HG11 sing N N 373 VAL CG1 HG12 sing N N 374 VAL CG1 HG13 sing N N 375 VAL CG2 HG21 sing N N 376 VAL CG2 HG22 sing N N 377 VAL CG2 HG23 sing N N 378 VAL OXT HXT sing N N 379 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1FGY _pdbx_initial_refinement_model.details ? #