HEADER OXIDOREDUCTASE 19-JUL-04 1U2K TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN FROM THE CATALASE- TITLE 2 PEROXIDASE KATG OF ESCHERICHIA COLI (I41) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIDASE/CATALASE HPI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: CATALASE-PEROXIDASE, HYDROPEROXIDASE I; COMPND 6 EC: 1.11.1.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: KATG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KATG, CATALASE-PEROXIDASE, C-TERMINAL DOMAIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.CARPENA,W.MELIK-ADAMYAN,P.C.LOEWEN,I.FITA REVDAT 4 23-AUG-23 1U2K 1 SEQADV REVDAT 3 13-JUL-11 1U2K 1 VERSN REVDAT 2 24-FEB-09 1U2K 1 VERSN REVDAT 1 05-OCT-04 1U2K 0 JRNL AUTH X.CARPENA,W.MELIK-ADAMYAN,P.C.LOEWEN,I.FITA JRNL TITL STRUCTURE OF THE C-TERMINAL DOMAIN OF THE JRNL TITL 2 CATALASE-PEROXIDASE KATG FROM ESCHERICHIA COLI. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 1824 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15388929 JRNL DOI 10.1107/S0907444904020621 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 16817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 904 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1209 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2233 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.91000 REMARK 3 B22 (A**2) : -1.91000 REMARK 3 B33 (A**2) : 3.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.218 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.585 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2271 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3077 ; 1.751 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 9.873 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 351 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1727 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1036 ; 0.292 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 95 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.295 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.309 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1447 ; 2.794 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2313 ; 4.453 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 824 ; 6.009 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 764 ; 8.566 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 435 A 726 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5460 15.6070 0.7530 REMARK 3 T TENSOR REMARK 3 T11: 0.3552 T22: 0.2947 REMARK 3 T33: 0.0651 T12: -0.1060 REMARK 3 T13: -0.0382 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: 2.1445 L22: 3.1227 REMARK 3 L33: 1.2287 L12: -1.9355 REMARK 3 L13: -0.3051 L23: 0.0779 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: -0.1254 S13: -0.3065 REMARK 3 S21: -0.0739 S22: 0.1754 S23: 0.2843 REMARK 3 S31: -0.1033 S32: -0.0788 S33: -0.1636 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2001 A 2422 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4970 17.1870 0.7200 REMARK 3 T TENSOR REMARK 3 T11: 0.2569 T22: 0.2357 REMARK 3 T33: 0.0023 T12: -0.1060 REMARK 3 T13: -0.0100 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.5496 L22: 1.4108 REMARK 3 L33: 1.5113 L12: -1.5210 REMARK 3 L13: 0.2708 L23: -0.0857 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: -0.0760 S13: -0.1208 REMARK 3 S21: -0.1286 S22: 0.1141 S23: 0.0343 REMARK 3 S31: -0.1266 S32: 0.0920 S33: -0.1845 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.932 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17719 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 17.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.15000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1MWV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 34% PEG 4000, 50 MM SODIUM ACETATE, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.61750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 29.61750 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.19100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.61750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.09550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.61750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.28650 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.61750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.61750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.19100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 29.61750 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 120.28650 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 29.61750 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.09550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 418 REMARK 465 SER A 419 REMARK 465 HIS A 420 REMARK 465 MET A 421 REMARK 465 TYR A 422 REMARK 465 ILE A 423 REMARK 465 GLY A 424 REMARK 465 PRO A 425 REMARK 465 GLU A 426 REMARK 465 VAL A 427 REMARK 465 PRO A 428 REMARK 465 LYS A 429 REMARK 465 GLU A 430 REMARK 465 ASP A 431 REMARK 465 LEU A 432 REMARK 465 ILE A 433 REMARK 465 TRP A 434 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 435 CG CD OE1 NE2 REMARK 470 LEU A 726 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 THR A 590 CD GLU A 592 1.89 REMARK 500 CG2 THR A 590 OE2 GLU A 592 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO A 554 NH2 ARG A 722 6565 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 558 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 580 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 MET A 616 CG - SD - CE ANGL. DEV. = 11.5 DEGREES REMARK 500 ASP A 667 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 721 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 724 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 483 56.54 -105.26 REMARK 500 ARG A 484 -43.13 -132.06 REMARK 500 ASP A 562 40.92 -93.57 REMARK 500 GLN A 563 14.90 -143.44 REMARK 500 ASP A 657 -172.62 177.11 REMARK 500 SER A 699 175.81 154.60 REMARK 500 SER A 700 -143.53 -101.31 REMARK 500 ASP A 701 3.93 45.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 436 PRO A 437 -130.76 REMARK 500 LEU A 586 ASP A 587 -145.52 REMARK 500 ALA A 698 SER A 699 143.98 REMARK 500 SER A 699 SER A 700 -96.86 REMARK 500 SER A 700 ASP A 701 -128.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U2J RELATED DB: PDB REMARK 900 P212121 ECKATG C-TERMINAL STRUCTURE WITH HIS TAG REMARK 900 RELATED ID: 1U2L RELATED DB: PDB REMARK 900 P1 ECKATG C-TERMINAL STRUCTURE DBREF 1U2K A 422 726 UNP P13029 CATA_ECOLI 422 726 SEQADV 1U2K GLY A 418 UNP P13029 CLONING ARTIFACT SEQADV 1U2K SER A 419 UNP P13029 CLONING ARTIFACT SEQADV 1U2K HIS A 420 UNP P13029 CLONING ARTIFACT SEQADV 1U2K MET A 421 UNP P13029 CLONING ARTIFACT SEQRES 1 A 309 GLY SER HIS MET TYR ILE GLY PRO GLU VAL PRO LYS GLU SEQRES 2 A 309 ASP LEU ILE TRP GLN ASP PRO LEU PRO GLN PRO ILE TYR SEQRES 3 A 309 ASN PRO THR GLU GLN ASP ILE ILE ASP LEU LYS PHE ALA SEQRES 4 A 309 ILE ALA ASP SER GLY LEU SER VAL SER GLU LEU VAL SER SEQRES 5 A 309 VAL ALA TRP ALA SER ALA SER THR PHE ARG GLY GLY ASP SEQRES 6 A 309 LYS ARG GLY GLY ALA ASN GLY ALA ARG LEU ALA LEU MET SEQRES 7 A 309 PRO GLN ARG ASP TRP ASP VAL ASN ALA ALA ALA VAL ARG SEQRES 8 A 309 ALA LEU PRO VAL LEU GLU LYS ILE GLN LYS GLU SER GLY SEQRES 9 A 309 LYS ALA SER LEU ALA ASP ILE ILE VAL LEU ALA GLY VAL SEQRES 10 A 309 VAL GLY VAL GLU LYS ALA ALA SER ALA ALA GLY LEU SER SEQRES 11 A 309 ILE HIS VAL PRO PHE ALA PRO GLY ARG VAL ASP ALA ARG SEQRES 12 A 309 GLN ASP GLN THR ASP ILE GLU MET PHE GLU LEU LEU GLU SEQRES 13 A 309 PRO ILE ALA ASP GLY PHE ARG ASN TYR ARG ALA ARG LEU SEQRES 14 A 309 ASP VAL SER THR THR GLU SER LEU LEU ILE ASP LYS ALA SEQRES 15 A 309 GLN GLN LEU THR LEU THR ALA PRO GLU MET THR ALA LEU SEQRES 16 A 309 VAL GLY GLY MET ARG VAL LEU GLY ALA ASN PHE ASP GLY SEQRES 17 A 309 SER LYS ASN GLY VAL PHE THR ASP ARG VAL GLY VAL LEU SEQRES 18 A 309 SER ASN ASP PHE PHE VAL ASN LEU LEU ASP MET ARG TYR SEQRES 19 A 309 GLU TRP LYS ALA THR ASP GLU SER LYS GLU LEU PHE GLU SEQRES 20 A 309 GLY ARG ASP ARG GLU THR GLY GLU VAL LYS PHE THR ALA SEQRES 21 A 309 SER ARG ALA ASP LEU VAL PHE GLY SER ASN SER VAL LEU SEQRES 22 A 309 ARG ALA VAL ALA GLU VAL TYR ALA SER SER ASP ALA HIS SEQRES 23 A 309 GLU LYS PHE VAL LYS ASP PHE VAL ALA ALA TRP VAL LYS SEQRES 24 A 309 VAL MET ASN LEU ASP ARG PHE ASP LEU LEU FORMUL 2 HOH *93(H2 O) HELIX 1 1 THR A 446 ASP A 459 1 14 HELIX 2 2 SER A 463 SER A 476 1 14 HELIX 3 3 ALA A 490 LEU A 494 5 5 HELIX 4 4 PRO A 496 ALA A 504 5 9 HELIX 5 5 ALA A 505 GLY A 521 1 17 HELIX 6 6 SER A 524 ALA A 544 1 21 HELIX 7 7 ARG A 560 THR A 564 5 5 HELIX 8 8 ASP A 565 LEU A 571 1 7 HELIX 9 9 THR A 590 LEU A 602 1 13 HELIX 10 10 THR A 605 GLY A 620 1 16 HELIX 11 11 ASN A 640 ASP A 648 1 9 HELIX 12 12 ARG A 679 ASN A 687 1 9 HELIX 13 13 ASN A 687 ALA A 698 1 12 HELIX 14 14 ALA A 702 ASN A 719 1 18 SHEET 1 A 2 ALA A 576 ASP A 577 0 SHEET 2 A 2 TYR A 582 ARG A 583 -1 O TYR A 582 N ASP A 577 SHEET 1 B 3 TYR A 651 ALA A 655 0 SHEET 2 B 3 LEU A 662 ASP A 667 -1 O ARG A 666 N GLU A 652 SHEET 3 B 3 VAL A 673 SER A 678 -1 O PHE A 675 N GLY A 665 CISPEP 1 MET A 495 PRO A 496 0 0.78 CRYST1 59.235 59.235 160.382 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016882 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006235 0.00000