data_1U3E # _entry.id 1U3E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1U3E pdb_00001u3e 10.2210/pdb1u3e/pdb NDB PD0575 ? ? RCSB RCSB023194 ? ? WWPDB D_1000023194 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-08-31 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2024-02-14 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_site 7 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 21 5 'Structure model' '_pdbx_struct_conn_angle.value' 22 5 'Structure model' '_struct_conn.pdbx_dist_value' 23 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 5 'Structure model' '_struct_conn.ptnr2_symmetry' 38 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1U3E _pdbx_database_status.recvd_initial_deposition_date 2004-07-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1I3J 'DNA-binding domain of Intron endonuclease I-Tevi with substrate' unspecified PDB 1A73 ;Intron-encoded endonuclease I-Ppo1 complexed with DNA (His-Cys box) ; unspecified PDB 1FSJ 'Crystal structure of the E9 Dnase domain (non-specific HNH nuclease)' unspecified PDB 1PT3 'crystal structure of Nuclease-Cole& complexed with Octamer DNA (non-specific HNH nuclease)' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shen, B.W.' 1 'Landthaler, M.' 2 'Shub, D.A.' 3 'Stoddard, B.L.' 4 # _citation.id primary _citation.title 'DNA Binding and Cleavage by the HNH Homing Endonuclease I-HmuI.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 342 _citation.page_first 43 _citation.page_last 56 _citation.year 2004 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15313606 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2004.07.032 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shen, B.W.' 1 ? primary 'Landthaler, M.' 2 ? primary 'Shub, D.A.' 3 ? primary 'Stoddard, B.L.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 36-MER 11039.131 1 ? ? ? ? 2 polymer syn "5'-D(*CP*TP*TP*AP*CP*GP*TP*GP*GP*GP*AP*AP*TP*TP*GP*CP*TP*GP*AP*GP*C)-3'" 6494.194 1 ? ? ? ? 3 polymer syn "5'-D(P*GP*TP*TP*AP*GP*GP*CP*TP*CP*AP*TP*TP*AP*CP*T)-3'" 4574.982 1 ? ? ? ? 4 polymer man 'HNH homing endonuclease' 19803.684 1 ? ? ? ? 5 non-polymer syn 'STRONTIUM ION' 87.620 4 ? ? ? ? 6 non-polymer syn 1,2-ETHANEDIOL 62.068 7 ? ? ? ? 7 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 8 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 9 water nat water 18.015 31 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DG)(DT)(DA)(DA)(DT)(DG)(DA)(DG)(DC)(DC)(DT)(DA)(DA)(DC)(DG)(DC)(DT)(DC)(DA)(DG) (DC)(DA)(DA)(DT)(DT)(DC)(DC)(DC)(DA)(DC)(DG)(DT)(DA)(DA)(DG)(DA) ; GTAATGAGCCTAACGCTCAGCAATTCCCACGTAAGA A ? 2 polydeoxyribonucleotide no no ;(DC)(DT)(DT)(DA)(DC)(DG)(DT)(DG)(DG)(DG)(DA)(DA)(DT)(DT)(DG)(DC)(DT)(DG)(DA)(DG) (DC) ; CTTACGTGGGAATTGCTGAGC B ? 3 polydeoxyribonucleotide no no '(DG)(DT)(DT)(DA)(DG)(DG)(DC)(DT)(DC)(DA)(DT)(DT)(DA)(DC)(DT)' GTTAGGCTCATTACT C ? 4 'polypeptide(L)' no no ;MEWKDIKGYEGHYQVSNTGEVYSIKSGKTLKHQIPKDGYHRIGLFKGGKGKTFQVHRLVAIHFCEGYEEGLVVDHKDGNK DNNLSTNLRWVTQKINVENQMSRGTLNVSKAQQIAKIKNQKPIIVISPDGIEKEYPSTKCACEELGLTRGKVTDVLKGHR IHHKGYTFRYKLNG ; ;MEWKDIKGYEGHYQVSNTGEVYSIKSGKTLKHQIPKDGYHRIGLFKGGKGKTFQVHRLVAIHFCEGYEEGLVVDHKDGNK DNNLSTNLRWVTQKINVENQMSRGTLNVSKAQQIAKIKNQKPIIVISPDGIEKEYPSTKCACEELGLTRGKVTDVLKGHR IHHKGYTFRYKLNG ; M ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'STRONTIUM ION' SR 6 1,2-ETHANEDIOL EDO 7 'MANGANESE (II) ION' MN 8 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 9 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DA n 1 4 DA n 1 5 DT n 1 6 DG n 1 7 DA n 1 8 DG n 1 9 DC n 1 10 DC n 1 11 DT n 1 12 DA n 1 13 DA n 1 14 DC n 1 15 DG n 1 16 DC n 1 17 DT n 1 18 DC n 1 19 DA n 1 20 DG n 1 21 DC n 1 22 DA n 1 23 DA n 1 24 DT n 1 25 DT n 1 26 DC n 1 27 DC n 1 28 DC n 1 29 DA n 1 30 DC n 1 31 DG n 1 32 DT n 1 33 DA n 1 34 DA n 1 35 DG n 1 36 DA n 2 1 DC n 2 2 DT n 2 3 DT n 2 4 DA n 2 5 DC n 2 6 DG n 2 7 DT n 2 8 DG n 2 9 DG n 2 10 DG n 2 11 DA n 2 12 DA n 2 13 DT n 2 14 DT n 2 15 DG n 2 16 DC n 2 17 DT n 2 18 DG n 2 19 DA n 2 20 DG n 2 21 DC n 3 1 DG n 3 2 DT n 3 3 DT n 3 4 DA n 3 5 DG n 3 6 DG n 3 7 DC n 3 8 DT n 3 9 DC n 3 10 DA n 3 11 DT n 3 12 DT n 3 13 DA n 3 14 DC n 3 15 DT n 4 1 MET n 4 2 GLU n 4 3 TRP n 4 4 LYS n 4 5 ASP n 4 6 ILE n 4 7 LYS n 4 8 GLY n 4 9 TYR n 4 10 GLU n 4 11 GLY n 4 12 HIS n 4 13 TYR n 4 14 GLN n 4 15 VAL n 4 16 SER n 4 17 ASN n 4 18 THR n 4 19 GLY n 4 20 GLU n 4 21 VAL n 4 22 TYR n 4 23 SER n 4 24 ILE n 4 25 LYS n 4 26 SER n 4 27 GLY n 4 28 LYS n 4 29 THR n 4 30 LEU n 4 31 LYS n 4 32 HIS n 4 33 GLN n 4 34 ILE n 4 35 PRO n 4 36 LYS n 4 37 ASP n 4 38 GLY n 4 39 TYR n 4 40 HIS n 4 41 ARG n 4 42 ILE n 4 43 GLY n 4 44 LEU n 4 45 PHE n 4 46 LYS n 4 47 GLY n 4 48 GLY n 4 49 LYS n 4 50 GLY n 4 51 LYS n 4 52 THR n 4 53 PHE n 4 54 GLN n 4 55 VAL n 4 56 HIS n 4 57 ARG n 4 58 LEU n 4 59 VAL n 4 60 ALA n 4 61 ILE n 4 62 HIS n 4 63 PHE n 4 64 CYS n 4 65 GLU n 4 66 GLY n 4 67 TYR n 4 68 GLU n 4 69 GLU n 4 70 GLY n 4 71 LEU n 4 72 VAL n 4 73 VAL n 4 74 ASP n 4 75 HIS n 4 76 LYS n 4 77 ASP n 4 78 GLY n 4 79 ASN n 4 80 LYS n 4 81 ASP n 4 82 ASN n 4 83 ASN n 4 84 LEU n 4 85 SER n 4 86 THR n 4 87 ASN n 4 88 LEU n 4 89 ARG n 4 90 TRP n 4 91 VAL n 4 92 THR n 4 93 GLN n 4 94 LYS n 4 95 ILE n 4 96 ASN n 4 97 VAL n 4 98 GLU n 4 99 ASN n 4 100 GLN n 4 101 MET n 4 102 SER n 4 103 ARG n 4 104 GLY n 4 105 THR n 4 106 LEU n 4 107 ASN n 4 108 VAL n 4 109 SER n 4 110 LYS n 4 111 ALA n 4 112 GLN n 4 113 GLN n 4 114 ILE n 4 115 ALA n 4 116 LYS n 4 117 ILE n 4 118 LYS n 4 119 ASN n 4 120 GLN n 4 121 LYS n 4 122 PRO n 4 123 ILE n 4 124 ILE n 4 125 VAL n 4 126 ILE n 4 127 SER n 4 128 PRO n 4 129 ASP n 4 130 GLY n 4 131 ILE n 4 132 GLU n 4 133 LYS n 4 134 GLU n 4 135 TYR n 4 136 PRO n 4 137 SER n 4 138 THR n 4 139 LYS n 4 140 CYS n 4 141 ALA n 4 142 CYS n 4 143 GLU n 4 144 GLU n 4 145 LEU n 4 146 GLY n 4 147 LEU n 4 148 THR n 4 149 ARG n 4 150 GLY n 4 151 LYS n 4 152 VAL n 4 153 THR n 4 154 ASP n 4 155 VAL n 4 156 LEU n 4 157 LYS n 4 158 GLY n 4 159 HIS n 4 160 ARG n 4 161 ILE n 4 162 HIS n 4 163 HIS n 4 164 LYS n 4 165 GLY n 4 166 TYR n 4 167 THR n 4 168 PHE n 4 169 ARG n 4 170 TYR n 4 171 LYS n 4 172 LEU n 4 173 ASN n 4 174 GLY n # _entity_src_gen.entity_id 4 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus 'SPO1-like viruses' _entity_src_gen.pdbx_gene_src_gene 'bacteriophage SP01' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus phage SPO1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10685 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)codon+' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pKYB1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 2 2 DG G A . n A 1 2 DT 2 3 3 DT T A . n A 1 3 DA 3 4 4 DA A A . n A 1 4 DA 4 5 5 DA A A . n A 1 5 DT 5 6 6 DT T A . n A 1 6 DG 6 7 7 DG G A . n A 1 7 DA 7 8 8 DA A A . n A 1 8 DG 8 9 9 DG G A . n A 1 9 DC 9 10 10 DC C A . n A 1 10 DC 10 11 11 DC C A . n A 1 11 DT 11 12 12 DT T A . n A 1 12 DA 12 13 13 DA A A . n A 1 13 DA 13 14 14 DA A A . n A 1 14 DC 14 15 15 DC C A . n A 1 15 DG 15 16 16 DG G A . n A 1 16 DC 16 17 17 DC C A . n A 1 17 DT 17 18 18 DT T A . n A 1 18 DC 18 19 19 DC C A . n A 1 19 DA 19 20 20 DA A A . n A 1 20 DG 20 21 21 DG G A . n A 1 21 DC 21 22 22 DC C A . n A 1 22 DA 22 23 23 DA A A . n A 1 23 DA 23 24 24 DA A A . n A 1 24 DT 24 25 25 DT T A . n A 1 25 DT 25 26 26 DT T A . n A 1 26 DC 26 27 27 DC C A . n A 1 27 DC 27 28 28 DC C A . n A 1 28 DC 28 29 29 DC C A . n A 1 29 DA 29 30 30 DA A A . n A 1 30 DC 30 31 31 DC C A . n A 1 31 DG 31 32 32 DG G A . n A 1 32 DT 32 33 33 DT T A . n A 1 33 DA 33 34 34 DA A A . n A 1 34 DA 34 35 35 DA A A . n A 1 35 DG 35 36 36 DG G A . n A 1 36 DA 36 37 37 DA A A . n B 2 1 DC 1 2 2 DC C B . n B 2 2 DT 2 3 3 DT T B . n B 2 3 DT 3 4 4 DT T B . n B 2 4 DA 4 5 5 DA A B . n B 2 5 DC 5 6 6 DC C B . n B 2 6 DG 6 7 7 DG G B . n B 2 7 DT 7 8 8 DT T B . n B 2 8 DG 8 9 9 DG G B . n B 2 9 DG 9 10 10 DG G B . n B 2 10 DG 10 11 11 DG G B . n B 2 11 DA 11 12 12 DA A B . n B 2 12 DA 12 13 13 DA A B . n B 2 13 DT 13 14 14 DT T B . n B 2 14 DT 14 15 15 DT T B . n B 2 15 DG 15 16 16 DG G B . n B 2 16 DC 16 17 17 DC C B . n B 2 17 DT 17 18 18 DT T B . n B 2 18 DG 18 19 19 DG G B . n B 2 19 DA 19 20 20 DA A B . n B 2 20 DG 20 21 21 DG G B . n B 2 21 DC 21 22 22 DC C B . n C 3 1 DG 1 23 23 DG G C . n C 3 2 DT 2 24 24 DT T C . n C 3 3 DT 3 25 25 DT T C . n C 3 4 DA 4 26 26 DA A C . n C 3 5 DG 5 27 27 DG G C . n C 3 6 DG 6 28 28 DG G C . n C 3 7 DC 7 29 29 DC C C . n C 3 8 DT 8 30 30 DT T C . n C 3 9 DC 9 31 31 DC C C . n C 3 10 DA 10 32 32 DA A C . n C 3 11 DT 11 33 33 DT T C . n C 3 12 DT 12 34 34 DT T C . n C 3 13 DA 13 35 35 DA A C . n C 3 14 DC 14 36 36 DC C C . n C 3 15 DT 15 37 37 DT T C . n D 4 1 MET 1 1 1 MET MET M . n D 4 2 GLU 2 2 2 GLU GLU M . n D 4 3 TRP 3 3 3 TRP TRP M . n D 4 4 LYS 4 4 4 LYS LYS M . n D 4 5 ASP 5 5 5 ASP ASP M . n D 4 6 ILE 6 6 6 ILE ILE M . n D 4 7 LYS 7 7 7 LYS LYS M . n D 4 8 GLY 8 8 8 GLY GLY M . n D 4 9 TYR 9 9 9 TYR TYR M . n D 4 10 GLU 10 10 10 GLU GLU M . n D 4 11 GLY 11 11 11 GLY GLY M . n D 4 12 HIS 12 12 12 HIS HIS M . n D 4 13 TYR 13 13 13 TYR TYR M . n D 4 14 GLN 14 14 14 GLN GLN M . n D 4 15 VAL 15 15 15 VAL VAL M . n D 4 16 SER 16 16 16 SER SER M . n D 4 17 ASN 17 17 17 ASN ASN M . n D 4 18 THR 18 18 18 THR THR M . n D 4 19 GLY 19 19 19 GLY GLY M . n D 4 20 GLU 20 20 20 GLU GLU M . n D 4 21 VAL 21 21 21 VAL VAL M . n D 4 22 TYR 22 22 22 TYR TYR M . n D 4 23 SER 23 23 23 SER SER M . n D 4 24 ILE 24 24 24 ILE ILE M . n D 4 25 LYS 25 25 25 LYS LYS M . n D 4 26 SER 26 26 26 SER SER M . n D 4 27 GLY 27 27 27 GLY GLY M . n D 4 28 LYS 28 28 28 LYS LYS M . n D 4 29 THR 29 29 29 THR THR M . n D 4 30 LEU 30 30 30 LEU LEU M . n D 4 31 LYS 31 31 31 LYS LYS M . n D 4 32 HIS 32 32 32 HIS HIS M . n D 4 33 GLN 33 33 33 GLN GLN M . n D 4 34 ILE 34 34 34 ILE ILE M . n D 4 35 PRO 35 35 35 PRO PRO M . n D 4 36 LYS 36 36 36 LYS LYS M . n D 4 37 ASP 37 37 37 ASP ASP M . n D 4 38 GLY 38 38 38 GLY GLY M . n D 4 39 TYR 39 39 39 TYR TYR M . n D 4 40 HIS 40 40 40 HIS HIS M . n D 4 41 ARG 41 41 41 ARG ARG M . n D 4 42 ILE 42 42 42 ILE ILE M . n D 4 43 GLY 43 43 43 GLY GLY M . n D 4 44 LEU 44 44 44 LEU LEU M . n D 4 45 PHE 45 45 45 PHE PHE M . n D 4 46 LYS 46 46 46 LYS LYS M . n D 4 47 GLY 47 47 47 GLY GLY M . n D 4 48 GLY 48 48 48 GLY GLY M . n D 4 49 LYS 49 49 49 LYS LYS M . n D 4 50 GLY 50 50 50 GLY GLY M . n D 4 51 LYS 51 51 51 LYS LYS M . n D 4 52 THR 52 52 52 THR THR M . n D 4 53 PHE 53 53 53 PHE PHE M . n D 4 54 GLN 54 54 54 GLN GLN M . n D 4 55 VAL 55 55 55 VAL VAL M . n D 4 56 HIS 56 56 56 HIS HIS M . n D 4 57 ARG 57 57 57 ARG ARG M . n D 4 58 LEU 58 58 58 LEU LEU M . n D 4 59 VAL 59 59 59 VAL VAL M . n D 4 60 ALA 60 60 60 ALA ALA M . n D 4 61 ILE 61 61 61 ILE ILE M . n D 4 62 HIS 62 62 62 HIS HIS M . n D 4 63 PHE 63 63 63 PHE PHE M . n D 4 64 CYS 64 64 64 CYS CYS M . n D 4 65 GLU 65 65 65 GLU GLU M . n D 4 66 GLY 66 66 66 GLY GLY M . n D 4 67 TYR 67 67 67 TYR TYR M . n D 4 68 GLU 68 68 68 GLU GLU M . n D 4 69 GLU 69 69 69 GLU GLU M . n D 4 70 GLY 70 70 70 GLY GLY M . n D 4 71 LEU 71 71 71 LEU LEU M . n D 4 72 VAL 72 72 72 VAL VAL M . n D 4 73 VAL 73 73 73 VAL VAL M . n D 4 74 ASP 74 74 74 ASP ASP M . n D 4 75 HIS 75 75 75 HIS HIS M . n D 4 76 LYS 76 76 76 LYS LYS M . n D 4 77 ASP 77 77 77 ASP ASP M . n D 4 78 GLY 78 78 78 GLY GLY M . n D 4 79 ASN 79 79 79 ASN ASN M . n D 4 80 LYS 80 80 80 LYS LYS M . n D 4 81 ASP 81 81 81 ASP ASP M . n D 4 82 ASN 82 82 82 ASN ASN M . n D 4 83 ASN 83 83 83 ASN ASN M . n D 4 84 LEU 84 84 84 LEU LEU M . n D 4 85 SER 85 85 85 SER SER M . n D 4 86 THR 86 86 86 THR THR M . n D 4 87 ASN 87 87 87 ASN ASN M . n D 4 88 LEU 88 88 88 LEU LEU M . n D 4 89 ARG 89 89 89 ARG ARG M . n D 4 90 TRP 90 90 90 TRP TRP M . n D 4 91 VAL 91 91 91 VAL VAL M . n D 4 92 THR 92 92 92 THR THR M . n D 4 93 GLN 93 93 93 GLN GLN M . n D 4 94 LYS 94 94 94 LYS LYS M . n D 4 95 ILE 95 95 95 ILE ILE M . n D 4 96 ASN 96 96 96 ASN ASN M . n D 4 97 VAL 97 97 97 VAL VAL M . n D 4 98 GLU 98 98 98 GLU GLU M . n D 4 99 ASN 99 99 99 ASN ASN M . n D 4 100 GLN 100 100 100 GLN GLN M . n D 4 101 MET 101 101 101 MET MET M . n D 4 102 SER 102 102 102 SER SER M . n D 4 103 ARG 103 103 103 ARG ARG M . n D 4 104 GLY 104 104 104 GLY GLY M . n D 4 105 THR 105 105 105 THR THR M . n D 4 106 LEU 106 106 106 LEU LEU M . n D 4 107 ASN 107 107 107 ASN ASN M . n D 4 108 VAL 108 108 108 VAL VAL M . n D 4 109 SER 109 109 109 SER SER M . n D 4 110 LYS 110 110 110 LYS LYS M . n D 4 111 ALA 111 111 111 ALA ALA M . n D 4 112 GLN 112 112 112 GLN GLN M . n D 4 113 GLN 113 113 113 GLN GLN M . n D 4 114 ILE 114 114 114 ILE ILE M . n D 4 115 ALA 115 115 115 ALA ALA M . n D 4 116 LYS 116 116 116 LYS LYS M . n D 4 117 ILE 117 117 117 ILE ILE M . n D 4 118 LYS 118 118 118 LYS LYS M . n D 4 119 ASN 119 119 119 ASN ASN M . n D 4 120 GLN 120 120 120 GLN GLN M . n D 4 121 LYS 121 121 121 LYS LYS M . n D 4 122 PRO 122 122 122 PRO PRO M . n D 4 123 ILE 123 123 123 ILE ILE M . n D 4 124 ILE 124 124 124 ILE ILE M . n D 4 125 VAL 125 125 125 VAL VAL M . n D 4 126 ILE 126 126 126 ILE ILE M . n D 4 127 SER 127 127 127 SER SER M . n D 4 128 PRO 128 128 128 PRO PRO M . n D 4 129 ASP 129 129 129 ASP ASP M . n D 4 130 GLY 130 130 130 GLY GLY M . n D 4 131 ILE 131 131 131 ILE ILE M . n D 4 132 GLU 132 132 132 GLU GLU M . n D 4 133 LYS 133 133 133 LYS LYS M . n D 4 134 GLU 134 134 134 GLU GLU M . n D 4 135 TYR 135 135 135 TYR TYR M . n D 4 136 PRO 136 136 136 PRO PRO M . n D 4 137 SER 137 137 137 SER SER M . n D 4 138 THR 138 138 138 THR THR M . n D 4 139 LYS 139 139 139 LYS LYS M . n D 4 140 CYS 140 140 140 CYS CYS M . n D 4 141 ALA 141 141 141 ALA ALA M . n D 4 142 CYS 142 142 142 CYS CYS M . n D 4 143 GLU 143 143 143 GLU GLU M . n D 4 144 GLU 144 144 144 GLU GLU M . n D 4 145 LEU 145 145 145 LEU LEU M . n D 4 146 GLY 146 146 146 GLY GLY M . n D 4 147 LEU 147 147 147 LEU LEU M . n D 4 148 THR 148 148 148 THR THR M . n D 4 149 ARG 149 149 149 ARG ARG M . n D 4 150 GLY 150 150 150 GLY GLY M . n D 4 151 LYS 151 151 151 LYS LYS M . n D 4 152 VAL 152 152 152 VAL VAL M . n D 4 153 THR 153 153 153 THR THR M . n D 4 154 ASP 154 154 154 ASP ASP M . n D 4 155 VAL 155 155 155 VAL VAL M . n D 4 156 LEU 156 156 156 LEU LEU M . n D 4 157 LYS 157 157 157 LYS LYS M . n D 4 158 GLY 158 158 158 GLY GLY M . n D 4 159 HIS 159 159 159 HIS HIS M . n D 4 160 ARG 160 160 160 ARG ARG M . n D 4 161 ILE 161 161 161 ILE ILE M . n D 4 162 HIS 162 162 162 HIS HIS M . n D 4 163 HIS 163 163 163 HIS HIS M . n D 4 164 LYS 164 164 164 LYS LYS M . n D 4 165 GLY 165 165 165 GLY GLY M . n D 4 166 TYR 166 166 166 TYR TYR M . n D 4 167 THR 167 167 167 THR THR M . n D 4 168 PHE 168 168 168 PHE PHE M . n D 4 169 ARG 169 169 169 ARG ARG M . n D 4 170 TYR 170 170 170 TYR TYR M . n D 4 171 LYS 171 171 171 LYS LYS M . n D 4 172 LEU 172 172 172 LEU LEU M . n D 4 173 ASN 173 173 173 ASN ASN M . n D 4 174 GLY 174 174 174 GLY GLY M . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SR 1 414 414 SR SR A . F 5 SR 1 415 415 SR SR A . G 6 EDO 1 401 401 EDO EGL A . H 6 EDO 1 402 402 EDO EGL A . I 6 EDO 1 403 403 EDO EGL B . J 6 EDO 1 397 397 EDO EGL C . K 7 MN 1 413 413 MN MN M . L 5 SR 1 417 417 SR SR M . M 5 SR 1 418 418 SR SR M . N 6 EDO 1 398 398 EDO EGL M . O 6 EDO 1 399 399 EDO EGL M . P 6 EDO 1 400 400 EDO EGL M . Q 8 TRS 1 404 404 TRS TRS M . R 9 HOH 1 416 1 HOH HOH A . R 9 HOH 2 417 2 HOH HOH A . R 9 HOH 3 418 4 HOH HOH A . R 9 HOH 4 419 15 HOH HOH A . R 9 HOH 5 420 21 HOH HOH A . R 9 HOH 6 421 35 HOH HOH A . R 9 HOH 7 422 39 HOH HOH A . R 9 HOH 8 423 40 HOH HOH A . R 9 HOH 9 424 45 HOH HOH A . S 9 HOH 1 404 6 HOH HOH B . S 9 HOH 2 405 9 HOH HOH B . T 9 HOH 1 398 11 HOH HOH C . T 9 HOH 2 399 25 HOH HOH C . T 9 HOH 3 400 29 HOH HOH C . T 9 HOH 4 401 36 HOH HOH C . U 9 HOH 1 419 3 HOH HOH M . U 9 HOH 2 420 5 HOH HOH M . U 9 HOH 3 421 7 HOH HOH M . U 9 HOH 4 422 8 HOH HOH M . U 9 HOH 5 423 10 HOH HOH M . U 9 HOH 6 424 12 HOH HOH M . U 9 HOH 7 425 14 HOH HOH M . U 9 HOH 8 426 17 HOH HOH M . U 9 HOH 9 427 19 HOH HOH M . U 9 HOH 10 428 26 HOH HOH M . U 9 HOH 11 429 28 HOH HOH M . U 9 HOH 12 430 34 HOH HOH M . U 9 HOH 13 431 41 HOH HOH M . U 9 HOH 14 432 42 HOH HOH M . U 9 HOH 15 433 43 HOH HOH M . U 9 HOH 16 434 46 HOH HOH M . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 HKL-2000 'data reduction' . ? 4 CNS phasing . ? 5 # _cell.entry_id 1U3E _cell.length_a 45.000 _cell.length_b 108.300 _cell.length_c 248.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U3E _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 23 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 1U3E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.53 _exptl_crystal.density_percent_sol 60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'Hanging drop vapor diffusion' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.75 _exptl_crystal_grow.pdbx_details 'PEG600, pH 8.75, Hanging drop vapor diffusion, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 PEG600 ? ? ? 1 2 1 H2O ? ? ? 1 3 2 PEG600 ? ? ? 1 4 2 PEG600 ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315' 2003-12-10 'toroidal focusing mirror' 2 CCD 'ADSC QUANTUM 210' 2003-12-10 mirrors # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'single crystal Si(111), cylindrically bent' 'SINGLE WAVELENGTH' x-ray 2 1 M 'double crystal Si(220)' 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9796 1.0 2 1.00 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ALS BEAMLINE 5.0.2' ALS 5.0.2 ? 0.9796 2 SYNCHROTRON 'ALS BEAMLINE 5.0.1' ALS 5.0.1 ? 1.00 # _reflns.entry_id 1U3E _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 2.9 _reflns.d_resolution_low 50 _reflns.number_all 13440 _reflns.number_obs 13360 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.065 _reflns.pdbx_netI_over_sigmaI 23.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.5 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 2.96 _reflns_shell.percent_possible_all 97 _reflns_shell.Rmerge_I_obs 0.433 _reflns_shell.pdbx_Rsym_value 0.433 _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 717 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 1U3E _refine.ls_d_res_high 2.92 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F 1 _refine.pdbx_ls_sigma_I 2.0 _refine.ls_number_reflns_all 13440 _refine.ls_number_reflns_obs 13360 _refine.ls_number_reflns_R_free 2174 _refine.ls_percent_reflns_obs 10 _refine.ls_R_factor_all 0.22 _refine.ls_R_factor_obs 0.22 _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.247 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model 'pdb from SAD phase and DM with solvent flipping' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model anisotropic _refine.B_iso_mean 68.65 _refine.aniso_B[1][1] 6.855 _refine.aniso_B[1][2] 0.0 _refine.aniso_B[1][3] 0.0 _refine.aniso_B[2][2] -14.829 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 7.974 _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1,2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1U3E _refine_analyze.Luzzati_coordinate_error_obs 0.4 _refine_analyze.Luzzati_sigma_a_obs 0.51 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.45 _refine_analyze.Luzzati_sigma_a_free 0.68 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1393 _refine_hist.pdbx_number_atoms_nucleic_acid 1471 _refine_hist.pdbx_number_atoms_ligand 41 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 2936 _refine_hist.d_res_high 2.92 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 1.267 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.0066 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all . 2.92 3.02 . 0.428 . 0.465 . . 159 . 'X-RAY DIFFRACTION' . . . 3.02 3.15 . 0.363 . 0.4128 . . 122 . 'X-RAY DIFFRACTION' . . # _struct.entry_id 1U3E _struct.title 'DNA binding and cleavage by the HNH homing endonuclease I-HmuI' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1U3E _struct_keywords.pdbx_keywords 'DNA binding protein/DNA' _struct_keywords.text 'HNH catalytic motif, Helix-turn-helix DNA binding domain, protein-DNA complex, DNA binding protein-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? J N N 6 ? K N N 7 ? L N N 5 ? M N N 5 ? N N N 6 ? O N N 6 ? P N N 6 ? Q N N 8 ? R N N 9 ? S N N 9 ? T N N 9 ? U N N 9 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP YG31_BPSP1 P34081 4 ;MEWKDIKGYEGHYQVSNTGEVYSIKSGKTLKHQIPKDGYHRIGLFKGGKGKTFQVHRLVAIHFCEGYEEGLVVDHKDGNK DNNLSTNLRWVTQKINVENQMSRGTLNVSKAQQIAKIKNQKPIIVISPDGIEKEYPSTKCACEELGLTRGKVTDVLKGHR IHHKGYTFRYKLNG ; 1 ? 2 PDB 1U3E 1U3E 1 ? ? ? 3 PDB 1U3E 1U3E 2 ? ? ? 4 PDB 1U3E 1U3E 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1U3E M 1 ? 174 ? P34081 1 ? 174 ? 1 174 2 2 1U3E A 1 ? 36 ? 1U3E 2 ? 37 ? 2 37 3 3 1U3E B 1 ? 21 ? 1U3E 2 ? 22 ? 2 22 4 4 1U3E C 1 ? 15 ? 1U3E 23 ? 37 ? 23 37 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'one biological assembly per asymmetric unit' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL D 55 ? CYS D 64 ? VAL M 55 CYS M 64 1 ? 10 HELX_P HELX_P2 2 LEU D 84 ? THR D 86 ? LEU M 84 THR M 86 5 ? 3 HELX_P HELX_P3 3 THR D 92 ? GLY D 104 ? THR M 92 GLY M 104 1 ? 13 HELX_P HELX_P4 4 VAL D 108 ? ASN D 119 ? VAL M 108 ASN M 119 1 ? 12 HELX_P HELX_P5 5 SER D 137 ? GLY D 146 ? SER M 137 GLY M 146 1 ? 10 HELX_P HELX_P6 6 THR D 148 ? LYS D 157 ? THR M 148 LYS M 157 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E SR . SR ? ? ? 1_555 R HOH . O ? ? A SR 414 A HOH 424 1_555 ? ? ? ? ? ? ? 3.125 ? ? metalc2 metalc ? ? F SR . SR ? ? ? 1_555 R HOH . O ? ? A SR 415 A HOH 418 1_555 ? ? ? ? ? ? ? 3.375 ? ? metalc3 metalc ? ? F SR . SR ? ? ? 1_555 R HOH . O ? ? A SR 415 A HOH 418 3_555 ? ? ? ? ? ? ? 3.335 ? ? metalc4 metalc ? ? F SR . SR ? ? ? 1_555 S HOH . O ? ? A SR 415 B HOH 405 1_555 ? ? ? ? ? ? ? 3.091 ? ? metalc5 metalc ? ? F SR . SR ? ? ? 1_555 S HOH . O ? ? A SR 415 B HOH 405 3_555 ? ? ? ? ? ? ? 3.130 ? ? metalc6 metalc ? ? B DC 21 "O3'" ? ? ? 1_555 K MN . MN ? ? B DC 22 M MN 413 1_555 ? ? ? ? ? ? ? 2.666 ? ? metalc7 metalc ? ? S HOH . O ? ? ? 1_555 M SR . SR ? ? B HOH 404 M SR 418 1_555 ? ? ? ? ? ? ? 3.087 ? ? metalc8 metalc ? ? C DG 1 OP3 ? ? ? 1_555 K MN . MN ? ? C DG 23 M MN 413 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc9 metalc ? ? D ASP 74 OD1 ? ? ? 1_555 K MN . MN ? ? M ASP 74 M MN 413 1_555 ? ? ? ? ? ? ? 2.470 ? ? metalc10 metalc ? ? D ASN 96 OD1 ? ? ? 1_555 K MN . MN ? ? M ASN 96 M MN 413 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc11 metalc ? ? D LYS 118 O ? ? ? 1_555 L SR . SR ? ? M LYS 118 M SR 417 1_555 ? ? ? ? ? ? ? 2.812 ? ? metalc12 metalc ? ? D LYS 118 O ? ? ? 1_555 M SR . SR ? ? M LYS 118 M SR 418 1_555 ? ? ? ? ? ? ? 2.834 ? ? metalc13 metalc ? ? D GLN 120 O ? ? ? 1_555 L SR . SR ? ? M GLN 120 M SR 417 1_555 ? ? ? ? ? ? ? 3.015 ? ? metalc14 metalc ? ? K MN . MN ? ? ? 1_555 U HOH . O ? ? M MN 413 M HOH 420 1_555 ? ? ? ? ? ? ? 1.911 ? ? metalc15 metalc ? ? K MN . MN ? ? ? 1_555 U HOH . O ? ? M MN 413 M HOH 421 1_555 ? ? ? ? ? ? ? 1.858 ? ? metalc16 metalc ? ? L SR . SR ? ? ? 1_555 M SR . SR ? ? M SR 417 M SR 418 1_555 ? ? ? ? ? ? ? 3.183 ? ? metalc17 metalc ? ? L SR . SR ? ? ? 1_555 U HOH . O ? ? M SR 417 M HOH 425 1_555 ? ? ? ? ? ? ? 3.170 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 C DC 14 N3 ? ? A DG 2 C DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 C DC 14 O2 ? ? A DG 2 C DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 C DC 14 N4 ? ? A DG 2 C DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 3 N1 ? ? ? 1_555 C DT 12 N3 ? ? A DA 4 C DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 3 N6 ? ? ? 1_555 C DT 12 O4 ? ? A DA 4 C DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 C DT 11 N3 ? ? A DA 5 C DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 C DT 11 O4 ? ? A DA 5 C DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 5 N3 ? ? ? 1_555 C DA 10 N1 ? ? A DT 6 C DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 5 O4 ? ? ? 1_555 C DA 10 N6 ? ? A DT 6 C DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 N1 ? ? ? 1_555 C DC 9 N3 ? ? A DG 7 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N2 ? ? ? 1_555 C DC 9 O2 ? ? A DG 7 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 C DC 9 N4 ? ? A DG 7 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 7 N1 ? ? ? 1_555 C DT 8 N3 ? ? A DA 8 C DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 7 N6 ? ? ? 1_555 C DT 8 O4 ? ? A DA 8 C DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 N1 ? ? ? 1_555 C DC 7 N3 ? ? A DG 9 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N2 ? ? ? 1_555 C DC 7 O2 ? ? A DG 9 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 O6 ? ? ? 1_555 C DC 7 N4 ? ? A DG 9 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N3 ? ? ? 1_555 C DG 6 N1 ? ? A DC 10 C DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N4 ? ? ? 1_555 C DG 6 O6 ? ? A DC 10 C DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 O2 ? ? ? 1_555 C DG 6 N2 ? ? A DC 10 C DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 N3 ? ? ? 1_555 C DG 5 N1 ? ? A DC 11 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N4 ? ? ? 1_555 C DG 5 O6 ? ? A DC 11 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 O2 ? ? ? 1_555 C DG 5 N2 ? ? A DC 11 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 11 N3 ? ? ? 1_555 C DA 4 N1 ? ? A DT 12 C DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 11 O4 ? ? ? 1_555 C DA 4 N6 ? ? A DT 12 C DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 O2 ? ? ? 1_555 C DG 5 N2 ? ? A DT 12 C DG 27 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog27 hydrog ? ? A DA 12 N1 ? ? ? 1_555 C DT 3 N3 ? ? A DA 13 C DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 12 N6 ? ? ? 1_555 C DT 3 O4 ? ? A DA 13 C DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 13 N1 ? ? ? 1_555 C DT 2 N3 ? ? A DA 14 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 13 N6 ? ? ? 1_555 C DT 2 O4 ? ? A DA 14 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 14 N3 ? ? ? 1_555 C DG 1 N1 ? ? A DC 15 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 14 N4 ? ? ? 1_555 C DG 1 O6 ? ? A DC 15 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 14 O2 ? ? ? 1_555 C DG 1 N2 ? ? A DC 15 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 21 N3 ? ? A DG 16 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 21 O2 ? ? A DG 16 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 21 N4 ? ? A DG 16 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 20 N1 ? ? A DC 17 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 20 O6 ? ? A DC 17 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 20 N2 ? ? A DC 17 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DT 17 N3 ? ? ? 1_555 B DA 19 N1 ? ? A DT 18 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DT 17 O4 ? ? ? 1_555 B DA 19 N6 ? ? A DT 18 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 18 N1 ? ? A DC 19 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 18 O6 ? ? A DC 19 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 18 N2 ? ? A DC 19 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DA 19 N1 ? ? ? 1_555 B DT 17 N3 ? ? A DA 20 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DA 19 N6 ? ? ? 1_555 B DT 17 O4 ? ? A DA 20 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DG 20 N1 ? ? ? 1_555 B DC 16 N3 ? ? A DG 21 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 20 N2 ? ? ? 1_555 B DC 16 O2 ? ? A DG 21 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DG 20 O6 ? ? ? 1_555 B DC 16 N4 ? ? A DG 21 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DC 21 N3 ? ? ? 1_555 B DG 15 N1 ? ? A DC 22 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DC 21 N4 ? ? ? 1_555 B DG 15 O6 ? ? A DC 22 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DC 21 O2 ? ? ? 1_555 B DG 15 N2 ? ? A DC 22 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DA 22 N1 ? ? ? 1_555 B DT 14 N3 ? ? A DA 23 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A DA 22 N6 ? ? ? 1_555 B DT 14 O4 ? ? A DA 23 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A DA 23 N1 ? ? ? 1_555 B DT 13 N3 ? ? A DA 24 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A DA 23 N6 ? ? ? 1_555 B DT 13 O4 ? ? A DA 24 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A DT 24 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 25 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A DT 24 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 25 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A DT 25 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 26 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A DT 25 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 26 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A DC 26 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 27 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A DC 26 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 27 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A DC 26 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 27 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A DC 27 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 28 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A DC 27 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 28 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A DC 27 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 28 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A DC 28 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 29 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A DC 28 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 29 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A DC 28 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 29 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A DA 29 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 30 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A DA 29 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 30 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A DC 30 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 31 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A DC 30 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 31 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A DC 30 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 31 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A DG 31 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 32 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A DG 31 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 32 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A DG 31 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 32 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A DT 32 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 33 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A DT 32 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 33 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A DA 34 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 35 B DT 3 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog81 hydrog ? ? A DG 35 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 36 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A DG 35 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 36 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A DG 35 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 36 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? R HOH . ? A HOH 418 ? 1_555 SR ? F SR . ? A SR 415 ? 1_555 O ? R HOH . ? A HOH 418 ? 3_555 175.8 ? 2 O ? R HOH . ? A HOH 418 ? 1_555 SR ? F SR . ? A SR 415 ? 1_555 O ? S HOH . ? B HOH 405 ? 1_555 117.4 ? 3 O ? R HOH . ? A HOH 418 ? 3_555 SR ? F SR . ? A SR 415 ? 1_555 O ? S HOH . ? B HOH 405 ? 1_555 66.5 ? 4 O ? R HOH . ? A HOH 418 ? 1_555 SR ? F SR . ? A SR 415 ? 1_555 O ? S HOH . ? B HOH 405 ? 3_555 65.6 ? 5 O ? R HOH . ? A HOH 418 ? 3_555 SR ? F SR . ? A SR 415 ? 1_555 O ? S HOH . ? B HOH 405 ? 3_555 117.4 ? 6 O ? S HOH . ? B HOH 405 ? 1_555 SR ? F SR . ? A SR 415 ? 1_555 O ? S HOH . ? B HOH 405 ? 3_555 81.5 ? 7 "O3'" ? B DC 21 ? B DC 22 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 OP3 ? C DG 1 ? C DG 23 ? 1_555 82.0 ? 8 "O3'" ? B DC 21 ? B DC 22 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 OD1 ? D ASP 74 ? M ASP 74 ? 1_555 145.8 ? 9 OP3 ? C DG 1 ? C DG 23 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 OD1 ? D ASP 74 ? M ASP 74 ? 1_555 69.0 ? 10 "O3'" ? B DC 21 ? B DC 22 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 OD1 ? D ASN 96 ? M ASN 96 ? 1_555 75.7 ? 11 OP3 ? C DG 1 ? C DG 23 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 OD1 ? D ASN 96 ? M ASN 96 ? 1_555 94.7 ? 12 OD1 ? D ASP 74 ? M ASP 74 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 OD1 ? D ASN 96 ? M ASN 96 ? 1_555 88.7 ? 13 "O3'" ? B DC 21 ? B DC 22 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 O ? U HOH . ? M HOH 420 ? 1_555 131.1 ? 14 OP3 ? C DG 1 ? C DG 23 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 O ? U HOH . ? M HOH 420 ? 1_555 99.9 ? 15 OD1 ? D ASP 74 ? M ASP 74 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 O ? U HOH . ? M HOH 420 ? 1_555 73.5 ? 16 OD1 ? D ASN 96 ? M ASN 96 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 O ? U HOH . ? M HOH 420 ? 1_555 150.9 ? 17 "O3'" ? B DC 21 ? B DC 22 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 O ? U HOH . ? M HOH 421 ? 1_555 72.2 ? 18 OP3 ? C DG 1 ? C DG 23 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 O ? U HOH . ? M HOH 421 ? 1_555 152.8 ? 19 OD1 ? D ASP 74 ? M ASP 74 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 O ? U HOH . ? M HOH 421 ? 1_555 131.5 ? 20 OD1 ? D ASN 96 ? M ASN 96 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 O ? U HOH . ? M HOH 421 ? 1_555 71.2 ? 21 O ? U HOH . ? M HOH 420 ? 1_555 MN ? K MN . ? M MN 413 ? 1_555 O ? U HOH . ? M HOH 421 ? 1_555 103.4 ? 22 O ? S HOH . ? B HOH 404 ? 1_555 SR ? M SR . ? M SR 418 ? 1_555 O ? D LYS 118 ? M LYS 118 ? 1_555 154.8 ? 23 O ? D LYS 118 ? M LYS 118 ? 1_555 SR ? L SR . ? M SR 417 ? 1_555 O ? D GLN 120 ? M GLN 120 ? 1_555 90.8 ? 24 O ? D LYS 118 ? M LYS 118 ? 1_555 SR ? L SR . ? M SR 417 ? 1_555 SR ? M SR . ? M SR 418 ? 1_555 56.0 ? 25 O ? D GLN 120 ? M GLN 120 ? 1_555 SR ? L SR . ? M SR 417 ? 1_555 SR ? M SR . ? M SR 418 ? 1_555 116.8 ? 26 O ? D LYS 118 ? M LYS 118 ? 1_555 SR ? L SR . ? M SR 417 ? 1_555 O ? U HOH . ? M HOH 425 ? 1_555 144.9 ? 27 O ? D GLN 120 ? M GLN 120 ? 1_555 SR ? L SR . ? M SR 417 ? 1_555 O ? U HOH . ? M HOH 425 ? 1_555 89.9 ? 28 SR ? M SR . ? M SR 418 ? 1_555 SR ? L SR . ? M SR 417 ? 1_555 O ? U HOH . ? M HOH 425 ? 1_555 148.9 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 2 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP D 3 ? ASP D 5 ? TRP M 3 ASP M 5 A 2 TYR D 13 ? SER D 16 ? TYR M 13 SER M 16 A 3 VAL D 21 ? SER D 23 ? VAL M 21 SER M 23 A 4 THR D 29 ? LEU D 30 ? THR M 29 LEU M 30 B 1 ARG D 41 ? LYS D 46 ? ARG M 41 LYS M 46 B 2 LYS D 49 ? GLN D 54 ? LYS M 49 GLN M 54 C 1 VAL D 72 ? HIS D 75 ? VAL M 72 HIS M 75 C 2 LEU D 88 ? VAL D 91 ? LEU M 88 VAL M 91 D 1 GLU D 132 ? TYR D 135 ? GLU M 132 TYR M 135 D 2 ILE D 123 ? ILE D 126 ? ILE M 123 ILE M 126 D 3 THR D 167 ? TYR D 170 ? THR M 167 TYR M 170 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS D 4 ? N LYS M 4 O VAL D 15 ? O VAL M 15 A 2 3 N GLN D 14 ? N GLN M 14 O TYR D 22 ? O TYR M 22 A 3 4 N VAL D 21 ? N VAL M 21 O LEU D 30 ? O LEU M 30 B 1 2 N ILE D 42 ? N ILE M 42 O PHE D 53 ? O PHE M 53 C 1 2 N VAL D 72 ? N VAL M 72 O VAL D 91 ? O VAL M 91 D 1 2 O LYS D 133 ? O LYS M 133 N VAL D 125 ? N VAL M 125 D 2 3 N ILE D 124 ? N ILE M 124 O ARG D 169 ? O ARG M 169 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software M MN 413 ? 6 'BINDING SITE FOR RESIDUE MN M 413' AC2 Software A SR 414 ? 1 'BINDING SITE FOR RESIDUE SR A 414' AC3 Software A SR 415 ? 1 'BINDING SITE FOR RESIDUE SR A 415' AC4 Software M SR 417 ? 3 'BINDING SITE FOR RESIDUE SR M 417' AC5 Software M SR 418 ? 3 'BINDING SITE FOR RESIDUE SR M 418' AC6 Software C EDO 397 ? 4 'BINDING SITE FOR RESIDUE EDO C 397' AC7 Software M EDO 398 ? 4 'BINDING SITE FOR RESIDUE EDO M 398' AC8 Software M EDO 399 ? 2 'BINDING SITE FOR RESIDUE EDO M 399' AC9 Software M EDO 400 ? 5 'BINDING SITE FOR RESIDUE EDO M 400' BC1 Software A EDO 401 ? 4 'BINDING SITE FOR RESIDUE EDO A 401' BC2 Software B EDO 403 ? 5 'BINDING SITE FOR RESIDUE EDO B 403' BC3 Software M TRS 404 ? 5 'BINDING SITE FOR RESIDUE TRS M 404' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DC B 21 ? DC B 22 . ? 1_555 ? 2 AC1 6 DG C 1 ? DG C 23 . ? 1_555 ? 3 AC1 6 ASP D 74 ? ASP M 74 . ? 1_555 ? 4 AC1 6 ASN D 96 ? ASN M 96 . ? 1_555 ? 5 AC1 6 HOH U . ? HOH M 420 . ? 1_555 ? 6 AC1 6 HOH U . ? HOH M 421 . ? 1_555 ? 7 AC2 1 EDO I . ? EDO B 403 . ? 1_555 ? 8 AC3 1 HOH S . ? HOH B 405 . ? 1_555 ? 9 AC4 3 LYS D 118 ? LYS M 118 . ? 1_555 ? 10 AC4 3 GLN D 120 ? GLN M 120 . ? 1_555 ? 11 AC4 3 SR M . ? SR M 418 . ? 1_555 ? 12 AC5 3 HOH S . ? HOH B 404 . ? 1_555 ? 13 AC5 3 LYS D 118 ? LYS M 118 . ? 1_555 ? 14 AC5 3 SR L . ? SR M 417 . ? 1_555 ? 15 AC6 4 DG C 5 ? DG C 27 . ? 1_555 ? 16 AC6 4 DG C 6 ? DG C 28 . ? 1_555 ? 17 AC6 4 GLY D 50 ? GLY M 50 . ? 1_555 ? 18 AC6 4 THR D 52 ? THR M 52 . ? 1_555 ? 19 AC7 4 DT B 7 ? DT B 8 . ? 1_555 ? 20 AC7 4 ARG D 160 ? ARG M 160 . ? 1_555 ? 21 AC7 4 ILE D 161 ? ILE M 161 . ? 1_555 ? 22 AC7 4 HIS D 162 ? HIS M 162 . ? 1_555 ? 23 AC8 2 PRO D 128 ? PRO M 128 . ? 1_555 ? 24 AC8 2 HOH U . ? HOH M 427 . ? 1_555 ? 25 AC9 5 LYS D 7 ? LYS M 7 . ? 1_555 ? 26 AC9 5 HIS D 62 ? HIS M 62 . ? 1_555 ? 27 AC9 5 CYS D 64 ? CYS M 64 . ? 1_555 ? 28 AC9 5 GLU D 65 ? GLU M 65 . ? 1_555 ? 29 AC9 5 GLU D 134 ? GLU M 134 . ? 7_555 ? 30 BC1 4 DA A 19 ? DA A 20 . ? 1_555 ? 31 BC1 4 DG A 20 ? DG A 21 . ? 1_555 ? 32 BC1 4 HOH R . ? HOH A 416 . ? 1_555 ? 33 BC1 4 DG B 15 ? DG B 16 . ? 1_555 ? 34 BC2 5 DC A 26 ? DC A 27 . ? 1_555 ? 35 BC2 5 DC A 27 ? DC A 28 . ? 1_555 ? 36 BC2 5 SR E . ? SR A 414 . ? 1_555 ? 37 BC2 5 DA B 11 ? DA B 12 . ? 1_555 ? 38 BC2 5 DA B 12 ? DA B 13 . ? 1_555 ? 39 BC3 5 TRP D 3 ? TRP M 3 . ? 1_555 ? 40 BC3 5 GLN D 14 ? GLN M 14 . ? 1_555 ? 41 BC3 5 ASP D 129 ? ASP M 129 . ? 7_555 ? 42 BC3 5 HOH U . ? HOH M 430 . ? 1_555 ? 43 BC3 5 HOH U . ? HOH M 432 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 23 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 23 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.510 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.097 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.25 108.30 1.95 0.30 N 2 1 "O4'" C DT 24 ? ? "C1'" C DT 24 ? ? N1 C DT 24 ? ? 110.39 108.30 2.09 0.30 N 3 1 "O4'" C DT 25 ? ? "C1'" C DT 25 ? ? "C2'" C DT 25 ? ? 110.04 106.80 3.24 0.50 N 4 1 "O4'" C DG 27 ? ? "C4'" C DG 27 ? ? "C3'" C DG 27 ? ? 100.37 104.50 -4.13 0.40 N 5 1 "O4'" C DT 30 ? ? "C1'" C DT 30 ? ? "C2'" C DT 30 ? ? 110.21 106.80 3.41 0.50 N 6 1 "O4'" C DT 30 ? ? "C1'" C DT 30 ? ? N1 C DT 30 ? ? 110.17 108.30 1.87 0.30 N 7 1 "O4'" C DT 33 ? ? "C1'" C DT 33 ? ? N1 C DT 33 ? ? 110.16 108.30 1.86 0.30 N 8 1 "O4'" C DA 35 ? ? "C1'" C DA 35 ? ? "C2'" C DA 35 ? ? 110.73 106.80 3.93 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR M 9 ? ? -144.95 23.01 2 1 PRO M 35 ? ? -54.40 -164.38 3 1 ASN M 173 ? ? 66.34 106.68 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id SR _pdbx_struct_special_symmetry.auth_seq_id 415 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id SR _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_database_remark.id 400 _pdbx_database_remark.text ;COMPOUND The nick between Chain B and C was created by the enzyme ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 EDO C1 C N N 231 EDO O1 O N N 232 EDO C2 C N N 233 EDO O2 O N N 234 EDO H11 H N N 235 EDO H12 H N N 236 EDO HO1 H N N 237 EDO H21 H N N 238 EDO H22 H N N 239 EDO HO2 H N N 240 GLN N N N N 241 GLN CA C N S 242 GLN C C N N 243 GLN O O N N 244 GLN CB C N N 245 GLN CG C N N 246 GLN CD C N N 247 GLN OE1 O N N 248 GLN NE2 N N N 249 GLN OXT O N N 250 GLN H H N N 251 GLN H2 H N N 252 GLN HA H N N 253 GLN HB2 H N N 254 GLN HB3 H N N 255 GLN HG2 H N N 256 GLN HG3 H N N 257 GLN HE21 H N N 258 GLN HE22 H N N 259 GLN HXT H N N 260 GLU N N N N 261 GLU CA C N S 262 GLU C C N N 263 GLU O O N N 264 GLU CB C N N 265 GLU CG C N N 266 GLU CD C N N 267 GLU OE1 O N N 268 GLU OE2 O N N 269 GLU OXT O N N 270 GLU H H N N 271 GLU H2 H N N 272 GLU HA H N N 273 GLU HB2 H N N 274 GLU HB3 H N N 275 GLU HG2 H N N 276 GLU HG3 H N N 277 GLU HE2 H N N 278 GLU HXT H N N 279 GLY N N N N 280 GLY CA C N N 281 GLY C C N N 282 GLY O O N N 283 GLY OXT O N N 284 GLY H H N N 285 GLY H2 H N N 286 GLY HA2 H N N 287 GLY HA3 H N N 288 GLY HXT H N N 289 HIS N N N N 290 HIS CA C N S 291 HIS C C N N 292 HIS O O N N 293 HIS CB C N N 294 HIS CG C Y N 295 HIS ND1 N Y N 296 HIS CD2 C Y N 297 HIS CE1 C Y N 298 HIS NE2 N Y N 299 HIS OXT O N N 300 HIS H H N N 301 HIS H2 H N N 302 HIS HA H N N 303 HIS HB2 H N N 304 HIS HB3 H N N 305 HIS HD1 H N N 306 HIS HD2 H N N 307 HIS HE1 H N N 308 HIS HE2 H N N 309 HIS HXT H N N 310 HOH O O N N 311 HOH H1 H N N 312 HOH H2 H N N 313 ILE N N N N 314 ILE CA C N S 315 ILE C C N N 316 ILE O O N N 317 ILE CB C N S 318 ILE CG1 C N N 319 ILE CG2 C N N 320 ILE CD1 C N N 321 ILE OXT O N N 322 ILE H H N N 323 ILE H2 H N N 324 ILE HA H N N 325 ILE HB H N N 326 ILE HG12 H N N 327 ILE HG13 H N N 328 ILE HG21 H N N 329 ILE HG22 H N N 330 ILE HG23 H N N 331 ILE HD11 H N N 332 ILE HD12 H N N 333 ILE HD13 H N N 334 ILE HXT H N N 335 LEU N N N N 336 LEU CA C N S 337 LEU C C N N 338 LEU O O N N 339 LEU CB C N N 340 LEU CG C N N 341 LEU CD1 C N N 342 LEU CD2 C N N 343 LEU OXT O N N 344 LEU H H N N 345 LEU H2 H N N 346 LEU HA H N N 347 LEU HB2 H N N 348 LEU HB3 H N N 349 LEU HG H N N 350 LEU HD11 H N N 351 LEU HD12 H N N 352 LEU HD13 H N N 353 LEU HD21 H N N 354 LEU HD22 H N N 355 LEU HD23 H N N 356 LEU HXT H N N 357 LYS N N N N 358 LYS CA C N S 359 LYS C C N N 360 LYS O O N N 361 LYS CB C N N 362 LYS CG C N N 363 LYS CD C N N 364 LYS CE C N N 365 LYS NZ N N N 366 LYS OXT O N N 367 LYS H H N N 368 LYS H2 H N N 369 LYS HA H N N 370 LYS HB2 H N N 371 LYS HB3 H N N 372 LYS HG2 H N N 373 LYS HG3 H N N 374 LYS HD2 H N N 375 LYS HD3 H N N 376 LYS HE2 H N N 377 LYS HE3 H N N 378 LYS HZ1 H N N 379 LYS HZ2 H N N 380 LYS HZ3 H N N 381 LYS HXT H N N 382 MET N N N N 383 MET CA C N S 384 MET C C N N 385 MET O O N N 386 MET CB C N N 387 MET CG C N N 388 MET SD S N N 389 MET CE C N N 390 MET OXT O N N 391 MET H H N N 392 MET H2 H N N 393 MET HA H N N 394 MET HB2 H N N 395 MET HB3 H N N 396 MET HG2 H N N 397 MET HG3 H N N 398 MET HE1 H N N 399 MET HE2 H N N 400 MET HE3 H N N 401 MET HXT H N N 402 MN MN MN N N 403 PHE N N N N 404 PHE CA C N S 405 PHE C C N N 406 PHE O O N N 407 PHE CB C N N 408 PHE CG C Y N 409 PHE CD1 C Y N 410 PHE CD2 C Y N 411 PHE CE1 C Y N 412 PHE CE2 C Y N 413 PHE CZ C Y N 414 PHE OXT O N N 415 PHE H H N N 416 PHE H2 H N N 417 PHE HA H N N 418 PHE HB2 H N N 419 PHE HB3 H N N 420 PHE HD1 H N N 421 PHE HD2 H N N 422 PHE HE1 H N N 423 PHE HE2 H N N 424 PHE HZ H N N 425 PHE HXT H N N 426 PRO N N N N 427 PRO CA C N S 428 PRO C C N N 429 PRO O O N N 430 PRO CB C N N 431 PRO CG C N N 432 PRO CD C N N 433 PRO OXT O N N 434 PRO H H N N 435 PRO HA H N N 436 PRO HB2 H N N 437 PRO HB3 H N N 438 PRO HG2 H N N 439 PRO HG3 H N N 440 PRO HD2 H N N 441 PRO HD3 H N N 442 PRO HXT H N N 443 SER N N N N 444 SER CA C N S 445 SER C C N N 446 SER O O N N 447 SER CB C N N 448 SER OG O N N 449 SER OXT O N N 450 SER H H N N 451 SER H2 H N N 452 SER HA H N N 453 SER HB2 H N N 454 SER HB3 H N N 455 SER HG H N N 456 SER HXT H N N 457 SR SR SR N N 458 THR N N N N 459 THR CA C N S 460 THR C C N N 461 THR O O N N 462 THR CB C N R 463 THR OG1 O N N 464 THR CG2 C N N 465 THR OXT O N N 466 THR H H N N 467 THR H2 H N N 468 THR HA H N N 469 THR HB H N N 470 THR HG1 H N N 471 THR HG21 H N N 472 THR HG22 H N N 473 THR HG23 H N N 474 THR HXT H N N 475 TRP N N N N 476 TRP CA C N S 477 TRP C C N N 478 TRP O O N N 479 TRP CB C N N 480 TRP CG C Y N 481 TRP CD1 C Y N 482 TRP CD2 C Y N 483 TRP NE1 N Y N 484 TRP CE2 C Y N 485 TRP CE3 C Y N 486 TRP CZ2 C Y N 487 TRP CZ3 C Y N 488 TRP CH2 C Y N 489 TRP OXT O N N 490 TRP H H N N 491 TRP H2 H N N 492 TRP HA H N N 493 TRP HB2 H N N 494 TRP HB3 H N N 495 TRP HD1 H N N 496 TRP HE1 H N N 497 TRP HE3 H N N 498 TRP HZ2 H N N 499 TRP HZ3 H N N 500 TRP HH2 H N N 501 TRP HXT H N N 502 TRS C C N N 503 TRS C1 C N N 504 TRS C2 C N N 505 TRS C3 C N N 506 TRS N N N N 507 TRS O1 O N N 508 TRS O2 O N N 509 TRS O3 O N N 510 TRS H11 H N N 511 TRS H12 H N N 512 TRS H21 H N N 513 TRS H22 H N N 514 TRS H31 H N N 515 TRS H32 H N N 516 TRS HN1 H N N 517 TRS HN2 H N N 518 TRS HN3 H N N 519 TRS HO1 H N N 520 TRS HO2 H N N 521 TRS HO3 H N N 522 TYR N N N N 523 TYR CA C N S 524 TYR C C N N 525 TYR O O N N 526 TYR CB C N N 527 TYR CG C Y N 528 TYR CD1 C Y N 529 TYR CD2 C Y N 530 TYR CE1 C Y N 531 TYR CE2 C Y N 532 TYR CZ C Y N 533 TYR OH O N N 534 TYR OXT O N N 535 TYR H H N N 536 TYR H2 H N N 537 TYR HA H N N 538 TYR HB2 H N N 539 TYR HB3 H N N 540 TYR HD1 H N N 541 TYR HD2 H N N 542 TYR HE1 H N N 543 TYR HE2 H N N 544 TYR HH H N N 545 TYR HXT H N N 546 VAL N N N N 547 VAL CA C N S 548 VAL C C N N 549 VAL O O N N 550 VAL CB C N N 551 VAL CG1 C N N 552 VAL CG2 C N N 553 VAL OXT O N N 554 VAL H H N N 555 VAL H2 H N N 556 VAL HA H N N 557 VAL HB H N N 558 VAL HG11 H N N 559 VAL HG12 H N N 560 VAL HG13 H N N 561 VAL HG21 H N N 562 VAL HG22 H N N 563 VAL HG23 H N N 564 VAL HXT H N N 565 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 EDO C1 O1 sing N N 232 EDO C1 C2 sing N N 233 EDO C1 H11 sing N N 234 EDO C1 H12 sing N N 235 EDO O1 HO1 sing N N 236 EDO C2 O2 sing N N 237 EDO C2 H21 sing N N 238 EDO C2 H22 sing N N 239 EDO O2 HO2 sing N N 240 GLN N CA sing N N 241 GLN N H sing N N 242 GLN N H2 sing N N 243 GLN CA C sing N N 244 GLN CA CB sing N N 245 GLN CA HA sing N N 246 GLN C O doub N N 247 GLN C OXT sing N N 248 GLN CB CG sing N N 249 GLN CB HB2 sing N N 250 GLN CB HB3 sing N N 251 GLN CG CD sing N N 252 GLN CG HG2 sing N N 253 GLN CG HG3 sing N N 254 GLN CD OE1 doub N N 255 GLN CD NE2 sing N N 256 GLN NE2 HE21 sing N N 257 GLN NE2 HE22 sing N N 258 GLN OXT HXT sing N N 259 GLU N CA sing N N 260 GLU N H sing N N 261 GLU N H2 sing N N 262 GLU CA C sing N N 263 GLU CA CB sing N N 264 GLU CA HA sing N N 265 GLU C O doub N N 266 GLU C OXT sing N N 267 GLU CB CG sing N N 268 GLU CB HB2 sing N N 269 GLU CB HB3 sing N N 270 GLU CG CD sing N N 271 GLU CG HG2 sing N N 272 GLU CG HG3 sing N N 273 GLU CD OE1 doub N N 274 GLU CD OE2 sing N N 275 GLU OE2 HE2 sing N N 276 GLU OXT HXT sing N N 277 GLY N CA sing N N 278 GLY N H sing N N 279 GLY N H2 sing N N 280 GLY CA C sing N N 281 GLY CA HA2 sing N N 282 GLY CA HA3 sing N N 283 GLY C O doub N N 284 GLY C OXT sing N N 285 GLY OXT HXT sing N N 286 HIS N CA sing N N 287 HIS N H sing N N 288 HIS N H2 sing N N 289 HIS CA C sing N N 290 HIS CA CB sing N N 291 HIS CA HA sing N N 292 HIS C O doub N N 293 HIS C OXT sing N N 294 HIS CB CG sing N N 295 HIS CB HB2 sing N N 296 HIS CB HB3 sing N N 297 HIS CG ND1 sing Y N 298 HIS CG CD2 doub Y N 299 HIS ND1 CE1 doub Y N 300 HIS ND1 HD1 sing N N 301 HIS CD2 NE2 sing Y N 302 HIS CD2 HD2 sing N N 303 HIS CE1 NE2 sing Y N 304 HIS CE1 HE1 sing N N 305 HIS NE2 HE2 sing N N 306 HIS OXT HXT sing N N 307 HOH O H1 sing N N 308 HOH O H2 sing N N 309 ILE N CA sing N N 310 ILE N H sing N N 311 ILE N H2 sing N N 312 ILE CA C sing N N 313 ILE CA CB sing N N 314 ILE CA HA sing N N 315 ILE C O doub N N 316 ILE C OXT sing N N 317 ILE CB CG1 sing N N 318 ILE CB CG2 sing N N 319 ILE CB HB sing N N 320 ILE CG1 CD1 sing N N 321 ILE CG1 HG12 sing N N 322 ILE CG1 HG13 sing N N 323 ILE CG2 HG21 sing N N 324 ILE CG2 HG22 sing N N 325 ILE CG2 HG23 sing N N 326 ILE CD1 HD11 sing N N 327 ILE CD1 HD12 sing N N 328 ILE CD1 HD13 sing N N 329 ILE OXT HXT sing N N 330 LEU N CA sing N N 331 LEU N H sing N N 332 LEU N H2 sing N N 333 LEU CA C sing N N 334 LEU CA CB sing N N 335 LEU CA HA sing N N 336 LEU C O doub N N 337 LEU C OXT sing N N 338 LEU CB CG sing N N 339 LEU CB HB2 sing N N 340 LEU CB HB3 sing N N 341 LEU CG CD1 sing N N 342 LEU CG CD2 sing N N 343 LEU CG HG sing N N 344 LEU CD1 HD11 sing N N 345 LEU CD1 HD12 sing N N 346 LEU CD1 HD13 sing N N 347 LEU CD2 HD21 sing N N 348 LEU CD2 HD22 sing N N 349 LEU CD2 HD23 sing N N 350 LEU OXT HXT sing N N 351 LYS N CA sing N N 352 LYS N H sing N N 353 LYS N H2 sing N N 354 LYS CA C sing N N 355 LYS CA CB sing N N 356 LYS CA HA sing N N 357 LYS C O doub N N 358 LYS C OXT sing N N 359 LYS CB CG sing N N 360 LYS CB HB2 sing N N 361 LYS CB HB3 sing N N 362 LYS CG CD sing N N 363 LYS CG HG2 sing N N 364 LYS CG HG3 sing N N 365 LYS CD CE sing N N 366 LYS CD HD2 sing N N 367 LYS CD HD3 sing N N 368 LYS CE NZ sing N N 369 LYS CE HE2 sing N N 370 LYS CE HE3 sing N N 371 LYS NZ HZ1 sing N N 372 LYS NZ HZ2 sing N N 373 LYS NZ HZ3 sing N N 374 LYS OXT HXT sing N N 375 MET N CA sing N N 376 MET N H sing N N 377 MET N H2 sing N N 378 MET CA C sing N N 379 MET CA CB sing N N 380 MET CA HA sing N N 381 MET C O doub N N 382 MET C OXT sing N N 383 MET CB CG sing N N 384 MET CB HB2 sing N N 385 MET CB HB3 sing N N 386 MET CG SD sing N N 387 MET CG HG2 sing N N 388 MET CG HG3 sing N N 389 MET SD CE sing N N 390 MET CE HE1 sing N N 391 MET CE HE2 sing N N 392 MET CE HE3 sing N N 393 MET OXT HXT sing N N 394 PHE N CA sing N N 395 PHE N H sing N N 396 PHE N H2 sing N N 397 PHE CA C sing N N 398 PHE CA CB sing N N 399 PHE CA HA sing N N 400 PHE C O doub N N 401 PHE C OXT sing N N 402 PHE CB CG sing N N 403 PHE CB HB2 sing N N 404 PHE CB HB3 sing N N 405 PHE CG CD1 doub Y N 406 PHE CG CD2 sing Y N 407 PHE CD1 CE1 sing Y N 408 PHE CD1 HD1 sing N N 409 PHE CD2 CE2 doub Y N 410 PHE CD2 HD2 sing N N 411 PHE CE1 CZ doub Y N 412 PHE CE1 HE1 sing N N 413 PHE CE2 CZ sing Y N 414 PHE CE2 HE2 sing N N 415 PHE CZ HZ sing N N 416 PHE OXT HXT sing N N 417 PRO N CA sing N N 418 PRO N CD sing N N 419 PRO N H sing N N 420 PRO CA C sing N N 421 PRO CA CB sing N N 422 PRO CA HA sing N N 423 PRO C O doub N N 424 PRO C OXT sing N N 425 PRO CB CG sing N N 426 PRO CB HB2 sing N N 427 PRO CB HB3 sing N N 428 PRO CG CD sing N N 429 PRO CG HG2 sing N N 430 PRO CG HG3 sing N N 431 PRO CD HD2 sing N N 432 PRO CD HD3 sing N N 433 PRO OXT HXT sing N N 434 SER N CA sing N N 435 SER N H sing N N 436 SER N H2 sing N N 437 SER CA C sing N N 438 SER CA CB sing N N 439 SER CA HA sing N N 440 SER C O doub N N 441 SER C OXT sing N N 442 SER CB OG sing N N 443 SER CB HB2 sing N N 444 SER CB HB3 sing N N 445 SER OG HG sing N N 446 SER OXT HXT sing N N 447 THR N CA sing N N 448 THR N H sing N N 449 THR N H2 sing N N 450 THR CA C sing N N 451 THR CA CB sing N N 452 THR CA HA sing N N 453 THR C O doub N N 454 THR C OXT sing N N 455 THR CB OG1 sing N N 456 THR CB CG2 sing N N 457 THR CB HB sing N N 458 THR OG1 HG1 sing N N 459 THR CG2 HG21 sing N N 460 THR CG2 HG22 sing N N 461 THR CG2 HG23 sing N N 462 THR OXT HXT sing N N 463 TRP N CA sing N N 464 TRP N H sing N N 465 TRP N H2 sing N N 466 TRP CA C sing N N 467 TRP CA CB sing N N 468 TRP CA HA sing N N 469 TRP C O doub N N 470 TRP C OXT sing N N 471 TRP CB CG sing N N 472 TRP CB HB2 sing N N 473 TRP CB HB3 sing N N 474 TRP CG CD1 doub Y N 475 TRP CG CD2 sing Y N 476 TRP CD1 NE1 sing Y N 477 TRP CD1 HD1 sing N N 478 TRP CD2 CE2 doub Y N 479 TRP CD2 CE3 sing Y N 480 TRP NE1 CE2 sing Y N 481 TRP NE1 HE1 sing N N 482 TRP CE2 CZ2 sing Y N 483 TRP CE3 CZ3 doub Y N 484 TRP CE3 HE3 sing N N 485 TRP CZ2 CH2 doub Y N 486 TRP CZ2 HZ2 sing N N 487 TRP CZ3 CH2 sing Y N 488 TRP CZ3 HZ3 sing N N 489 TRP CH2 HH2 sing N N 490 TRP OXT HXT sing N N 491 TRS C C1 sing N N 492 TRS C C2 sing N N 493 TRS C C3 sing N N 494 TRS C N sing N N 495 TRS C1 O1 sing N N 496 TRS C1 H11 sing N N 497 TRS C1 H12 sing N N 498 TRS C2 O2 sing N N 499 TRS C2 H21 sing N N 500 TRS C2 H22 sing N N 501 TRS C3 O3 sing N N 502 TRS C3 H31 sing N N 503 TRS C3 H32 sing N N 504 TRS N HN1 sing N N 505 TRS N HN2 sing N N 506 TRS N HN3 sing N N 507 TRS O1 HO1 sing N N 508 TRS O2 HO2 sing N N 509 TRS O3 HO3 sing N N 510 TYR N CA sing N N 511 TYR N H sing N N 512 TYR N H2 sing N N 513 TYR CA C sing N N 514 TYR CA CB sing N N 515 TYR CA HA sing N N 516 TYR C O doub N N 517 TYR C OXT sing N N 518 TYR CB CG sing N N 519 TYR CB HB2 sing N N 520 TYR CB HB3 sing N N 521 TYR CG CD1 doub Y N 522 TYR CG CD2 sing Y N 523 TYR CD1 CE1 sing Y N 524 TYR CD1 HD1 sing N N 525 TYR CD2 CE2 doub Y N 526 TYR CD2 HD2 sing N N 527 TYR CE1 CZ doub Y N 528 TYR CE1 HE1 sing N N 529 TYR CE2 CZ sing Y N 530 TYR CE2 HE2 sing N N 531 TYR CZ OH sing N N 532 TYR OH HH sing N N 533 TYR OXT HXT sing N N 534 VAL N CA sing N N 535 VAL N H sing N N 536 VAL N H2 sing N N 537 VAL CA C sing N N 538 VAL CA CB sing N N 539 VAL CA HA sing N N 540 VAL C O doub N N 541 VAL C OXT sing N N 542 VAL CB CG1 sing N N 543 VAL CB CG2 sing N N 544 VAL CB HB sing N N 545 VAL CG1 HG11 sing N N 546 VAL CG1 HG12 sing N N 547 VAL CG1 HG13 sing N N 548 VAL CG2 HG21 sing N N 549 VAL CG2 HG22 sing N N 550 VAL CG2 HG23 sing N N 551 VAL OXT HXT sing N N 552 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1U3E 'double helix' 1U3E 'b-form double helix' 1U3E 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 C DC 14 1_555 -0.073 0.303 1.623 63.640 -8.198 -3.084 1 A_DG2:DC36_C A 2 ? C 36 ? 19 1 1 A DA 3 1_555 C DT 12 1_555 -0.091 -0.081 -0.058 13.404 -2.556 8.896 2 A_DA4:DT34_C A 4 ? C 34 ? 20 1 1 A DA 4 1_555 C DT 11 1_555 0.129 0.028 -0.083 9.748 -31.709 0.572 3 A_DA5:DT33_C A 5 ? C 33 ? 20 1 1 A DT 5 1_555 C DA 10 1_555 0.027 -0.193 -0.415 13.200 -29.624 7.889 4 A_DT6:DA32_C A 6 ? C 32 ? 20 1 1 A DG 6 1_555 C DC 9 1_555 -0.318 -0.034 0.912 7.490 0.073 5.979 5 A_DG7:DC31_C A 7 ? C 31 ? 19 1 1 A DA 7 1_555 C DT 8 1_555 0.069 -0.074 0.863 12.971 -9.955 -2.334 6 A_DA8:DT30_C A 8 ? C 30 ? 20 1 1 A DG 8 1_555 C DC 7 1_555 -0.326 -0.232 -0.680 1.422 -16.014 8.074 7 A_DG9:DC29_C A 9 ? C 29 ? 19 1 1 A DC 9 1_555 C DG 6 1_555 0.102 -0.208 -0.824 6.723 -13.403 6.862 8 A_DC10:DG28_C A 10 ? C 28 ? 19 1 1 A DC 10 1_555 C DG 5 1_555 -0.226 -0.131 -0.586 -12.102 1.077 2.053 9 A_DC11:DG27_C A 11 ? C 27 ? 19 1 1 A DT 11 1_555 C DA 4 1_555 -0.139 -0.043 -0.640 10.137 -7.800 -1.215 10 A_DT12:DA26_C A 12 ? C 26 ? 20 1 1 A DA 12 1_555 C DT 3 1_555 -0.187 -0.004 -0.280 7.521 8.943 -0.231 11 A_DA13:DT25_C A 13 ? C 25 ? 20 1 1 A DA 13 1_555 C DT 2 1_555 0.050 -0.033 -0.250 23.359 -0.615 11.544 12 A_DA14:DT24_C A 14 ? C 24 ? 20 1 1 A DC 14 1_555 C DG 1 1_555 0.322 0.188 -0.993 38.942 -17.788 4.514 13 A_DC15:DG23_C A 15 ? C 23 ? 19 1 1 A DG 15 1_555 B DC 21 1_555 0.099 -0.144 -0.486 -3.904 -6.756 0.014 14 A_DG16:DC22_B A 16 ? B 22 ? 19 1 1 A DC 16 1_555 B DG 20 1_555 0.048 -0.184 -0.290 -6.109 -1.900 -4.844 15 A_DC17:DG21_B A 17 ? B 21 ? 19 1 1 A DT 17 1_555 B DA 19 1_555 -0.101 -0.011 -0.179 4.641 2.478 -4.664 16 A_DT18:DA20_B A 18 ? B 20 ? 20 1 1 A DC 18 1_555 B DG 18 1_555 0.041 -0.049 -0.749 18.646 2.792 -0.036 17 A_DC19:DG19_B A 19 ? B 19 ? 19 1 1 A DA 19 1_555 B DT 17 1_555 0.268 -0.159 -0.788 -14.722 2.963 -6.678 18 A_DA20:DT18_B A 20 ? B 18 ? 20 1 1 A DG 20 1_555 B DC 16 1_555 -0.028 0.001 0.319 1.157 -2.194 -1.824 19 A_DG21:DC17_B A 21 ? B 17 ? 19 1 1 A DC 21 1_555 B DG 15 1_555 0.067 0.009 0.148 3.482 -3.000 -1.234 20 A_DC22:DG16_B A 22 ? B 16 ? 19 1 1 A DA 22 1_555 B DT 14 1_555 -0.063 -0.087 -0.028 9.000 -12.190 -1.296 21 A_DA23:DT15_B A 23 ? B 15 ? 20 1 1 A DA 23 1_555 B DT 13 1_555 0.171 -0.066 0.132 4.805 -13.988 0.364 22 A_DA24:DT14_B A 24 ? B 14 ? 20 1 1 A DT 24 1_555 B DA 12 1_555 0.137 -0.050 -0.002 -2.905 -7.923 0.573 23 A_DT25:DA13_B A 25 ? B 13 ? 20 1 1 A DT 25 1_555 B DA 11 1_555 0.063 -0.020 -0.168 -6.583 -10.871 -1.839 24 A_DT26:DA12_B A 26 ? B 12 ? 20 1 1 A DC 26 1_555 B DG 10 1_555 0.241 -0.201 -0.617 -0.888 7.929 0.583 25 A_DC27:DG11_B A 27 ? B 11 ? 19 1 1 A DC 27 1_555 B DG 9 1_555 -0.028 -0.091 0.379 2.687 -3.941 -6.177 26 A_DC28:DG10_B A 28 ? B 10 ? 19 1 1 A DC 28 1_555 B DG 8 1_555 0.190 -0.073 -0.181 5.425 -5.670 -3.193 27 A_DC29:DG9_B A 29 ? B 9 ? 19 1 1 A DA 29 1_555 B DT 7 1_555 -0.007 -0.112 -0.163 9.047 -5.386 7.461 28 A_DA30:DT8_B A 30 ? B 8 ? 20 1 1 A DC 30 1_555 B DG 6 1_555 0.198 -0.179 -0.616 13.263 -11.354 2.894 29 A_DC31:DG7_B A 31 ? B 7 ? 19 1 1 A DG 31 1_555 B DC 5 1_555 -0.137 -0.081 0.256 6.009 -5.542 -2.543 30 A_DG32:DC6_B A 32 ? B 6 ? 19 1 1 A DT 32 1_555 B DA 4 1_555 1.219 -0.354 -0.145 6.682 -4.353 6.890 31 A_DT33:DA5_B A 33 ? B 5 ? 20 1 1 A DA 34 1_555 B DT 2 1_555 0.802 0.395 -0.148 1.493 -22.859 8.922 32 A_DA35:DT3_B A 35 ? B 3 ? ? ? 1 A DG 35 1_555 B DC 1 1_555 -0.099 -0.059 -0.341 -19.320 -18.086 0.615 33 A_DG36:DC2_B A 36 ? B 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 3 1_555 C DT 12 1_555 A DA 4 1_555 C DT 11 1_555 -1.440 0.112 3.572 0.426 -2.548 36.939 0.548 2.330 3.540 -4.015 -0.671 37.026 1 AA_DA4DA5:DT33DT34_CC A 4 ? C 34 ? A 5 ? C 33 ? 1 A DA 4 1_555 C DT 11 1_555 A DT 5 1_555 C DA 10 1_555 0.430 -0.756 3.211 4.136 -4.681 35.654 -0.555 -0.108 3.308 -7.573 -6.692 36.180 2 AA_DA5DT6:DA32DT33_CC A 5 ? C 33 ? A 6 ? C 32 ? 1 A DT 5 1_555 C DA 10 1_555 A DG 6 1_555 C DC 9 1_555 0.211 0.146 3.468 -12.986 0.062 36.800 0.210 -1.973 3.216 0.095 19.827 38.950 3 AA_DT6DG7:DC31DA32_CC A 6 ? C 32 ? A 7 ? C 31 ? 1 A DG 6 1_555 C DC 9 1_555 A DA 7 1_555 C DT 8 1_555 -0.745 -0.451 3.203 0.784 -2.114 35.229 -0.437 1.343 3.207 -3.488 -1.293 35.299 4 AA_DG7DA8:DT30DC31_CC A 7 ? C 31 ? A 8 ? C 30 ? 1 A DA 7 1_555 C DT 8 1_555 A DG 8 1_555 C DC 7 1_555 0.496 -0.737 3.852 8.245 8.404 31.433 -2.897 0.728 3.558 14.875 -14.594 33.514 5 AA_DA8DG9:DC29DT30_CC A 8 ? C 30 ? A 9 ? C 29 ? 1 A DG 8 1_555 C DC 7 1_555 A DC 9 1_555 C DG 6 1_555 0.056 -0.423 2.946 -1.381 10.262 33.447 -2.072 -0.278 2.699 17.321 2.330 34.969 6 AA_DG9DC10:DG28DC29_CC A 9 ? C 29 ? A 10 ? C 28 ? 1 A DC 9 1_555 C DG 6 1_555 A DC 10 1_555 C DG 5 1_555 -0.095 -0.826 3.933 -5.030 9.720 30.378 -3.510 -0.875 3.482 17.837 9.230 32.245 7 AA_DC10DC11:DG27DG28_CC A 10 ? C 28 ? A 11 ? C 27 ? 1 A DC 10 1_555 C DG 5 1_555 A DT 11 1_555 C DA 4 1_555 -0.990 -0.193 2.969 -2.267 -6.012 30.770 0.686 1.435 3.015 -11.177 4.216 31.417 8 AA_DC11DT12:DA26DG27_CC A 11 ? C 27 ? A 12 ? C 26 ? 1 A DT 11 1_555 C DA 4 1_555 A DA 12 1_555 C DT 3 1_555 0.008 -0.891 3.663 -8.769 -0.882 31.528 -1.410 -1.720 3.556 -1.585 15.757 32.706 9 AA_DT12DA13:DT25DA26_CC A 12 ? C 26 ? A 13 ? C 25 ? 1 A DA 12 1_555 C DT 3 1_555 A DA 13 1_555 C DT 2 1_555 0.810 -1.018 3.241 -0.488 -0.568 28.407 -1.943 -1.761 3.247 -1.157 0.994 28.417 10 AA_DA13DA14:DT24DT25_CC A 13 ? C 25 ? A 14 ? C 24 ? 1 A DA 13 1_555 C DT 2 1_555 A DC 14 1_555 C DG 1 1_555 -0.292 -0.752 2.915 3.599 7.793 29.818 -2.695 1.142 2.589 14.763 -6.818 31.002 11 AA_DA14DC15:DG23DT24_CC A 14 ? C 24 ? A 15 ? C 23 ? 1 A DC 14 1_555 C DG 1 1_555 A DG 15 1_555 B DC 21 1_555 -1.622 -1.248 4.331 -10.659 19.139 30.091 -5.322 0.680 3.363 32.069 17.860 37.072 12 AA_DC15DG16:DC22DG23_BC A 15 ? C 23 ? A 16 ? B 22 ? 1 A DG 15 1_555 B DC 21 1_555 A DC 16 1_555 B DG 20 1_555 -1.123 -1.088 3.301 -4.789 1.033 36.018 -1.893 1.115 3.386 1.662 7.701 36.339 13 AA_DG16DC17:DG21DC22_BB A 16 ? B 22 ? A 17 ? B 21 ? 1 A DC 16 1_555 B DG 20 1_555 A DT 17 1_555 B DA 19 1_555 0.196 0.671 3.207 0.816 12.599 28.057 -1.275 -0.206 3.211 24.479 -1.585 30.715 14 AA_DC17DT18:DA20DG21_BB A 17 ? B 21 ? A 18 ? B 20 ? 1 A DT 17 1_555 B DA 19 1_555 A DC 18 1_555 B DG 18 1_555 0.830 -0.115 2.960 6.746 2.615 31.303 -0.645 -0.374 3.048 4.767 -12.298 32.108 15 AA_DT18DC19:DG19DA20_BB A 18 ? B 20 ? A 19 ? B 19 ? 1 A DC 18 1_555 B DG 18 1_555 A DA 19 1_555 B DT 17 1_555 -0.105 2.205 5.074 0.832 37.052 22.328 -4.284 0.307 4.548 59.972 -1.347 43.065 16 AA_DC19DA20:DT18DG19_BB A 19 ? B 19 ? A 20 ? B 18 ? 1 A DA 19 1_555 B DT 17 1_555 A DG 20 1_555 B DC 16 1_555 -1.071 0.638 2.971 -12.660 4.935 34.109 0.350 -0.003 3.214 8.029 20.598 36.641 17 AA_DA20DG21:DC17DT18_BB A 20 ? B 18 ? A 21 ? B 17 ? 1 A DG 20 1_555 B DC 16 1_555 A DC 21 1_555 B DG 15 1_555 0.271 -0.130 3.388 1.647 0.433 32.038 -0.316 -0.183 3.395 0.784 -2.982 32.082 18 AA_DG21DC22:DG16DC17_BB A 21 ? B 17 ? A 22 ? B 16 ? 1 A DC 21 1_555 B DG 15 1_555 A DA 22 1_555 B DT 14 1_555 -0.948 0.534 3.161 1.118 2.332 37.052 0.538 1.633 3.159 3.665 -1.757 37.139 19 AA_DC22DA23:DT15DG16_BB A 22 ? B 16 ? A 23 ? B 15 ? 1 A DA 22 1_555 B DT 14 1_555 A DA 23 1_555 B DT 13 1_555 0.503 -0.513 3.392 -1.264 -2.048 36.221 -0.526 -0.992 3.396 -3.290 2.031 36.298 20 AA_DA23DA24:DT14DT15_BB A 23 ? B 15 ? A 24 ? B 14 ? 1 A DA 23 1_555 B DT 13 1_555 A DT 24 1_555 B DA 12 1_555 0.454 -1.235 3.392 -0.019 -0.221 33.760 -2.090 -0.786 3.400 -0.380 0.033 33.761 21 AA_DA24DT25:DA13DT14_BB A 24 ? B 14 ? A 25 ? B 13 ? 1 A DT 24 1_555 B DA 12 1_555 A DT 25 1_555 B DA 11 1_555 -0.194 -0.078 3.342 2.857 3.376 36.519 -0.592 0.704 3.298 5.363 -4.538 36.777 22 AA_DT25DT26:DA12DA13_BB A 25 ? B 13 ? A 26 ? B 12 ? 1 A DT 25 1_555 B DA 11 1_555 A DC 26 1_555 B DG 10 1_555 1.453 0.724 3.298 3.714 2.577 34.933 0.798 -1.828 3.472 4.270 -6.154 35.215 23 AA_DT26DC27:DG11DA12_BB A 26 ? B 12 ? A 27 ? B 11 ? 1 A DC 26 1_555 B DG 10 1_555 A DC 27 1_555 B DG 9 1_555 -1.708 0.599 3.571 -7.582 -2.819 31.635 1.627 1.533 3.802 -5.069 13.631 32.627 24 AA_DC27DC28:DG10DG11_BB A 27 ? B 11 ? A 28 ? B 10 ? 1 A DC 27 1_555 B DG 9 1_555 A DC 28 1_555 B DG 8 1_555 0.606 -1.254 3.208 2.616 3.036 35.945 -2.436 -0.618 3.130 4.901 -4.223 36.160 25 AA_DC28DC29:DG9DG10_BB A 28 ? B 10 ? A 29 ? B 9 ? 1 A DC 28 1_555 B DG 8 1_555 A DA 29 1_555 B DT 7 1_555 0.065 0.114 3.298 0.063 5.865 29.877 -0.970 -0.112 3.261 11.239 -0.121 30.434 26 AA_DC29DA30:DT8DG9_BB A 29 ? B 9 ? A 30 ? B 8 ? 1 A DA 29 1_555 B DT 7 1_555 A DC 30 1_555 B DG 6 1_555 -0.348 -0.461 3.244 2.619 4.708 31.753 -1.652 1.084 3.107 8.528 -4.744 32.195 27 AA_DA30DC31:DG7DT8_BB A 30 ? B 8 ? A 31 ? B 7 ? 1 A DC 30 1_555 B DG 6 1_555 A DG 31 1_555 B DC 5 1_555 -0.213 0.164 3.355 -6.963 10.028 35.255 -1.129 -0.630 3.263 15.976 11.094 37.245 28 AA_DC31DG32:DC6DG7_BB A 31 ? B 7 ? A 32 ? B 6 ? 1 A DG 31 1_555 B DC 5 1_555 A DT 32 1_555 B DA 4 1_555 0.313 -0.276 3.341 1.536 -0.697 38.355 -0.331 -0.280 3.355 -1.060 -2.337 38.390 29 AA_DG32DT33:DA5DC6_BB A 32 ? B 6 ? A 33 ? B 5 ? 1 A DT 32 1_555 B DA 4 1_555 A DA 34 1_555 B DT 2 1_555 -0.447 -0.543 6.693 1.419 -1.457 73.687 -0.358 0.465 6.693 -1.215 -1.183 73.711 30 AA_DT33DA35:DT3DA5_BB A 33 ? B 5 ? A 35 ? B 3 ? 1 A DA 34 1_555 B DT 2 1_555 A DG 35 1_555 B DC 1 1_555 -0.577 -0.269 3.615 -2.833 3.018 36.452 -0.886 0.487 3.615 4.805 4.510 36.678 31 AA_DA35DG36:DC2DT3_BB A 35 ? B 3 ? A 36 ? B 2 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'pdb from SAD phase and DM with solvent flipping' # _atom_sites.entry_id 1U3E _atom_sites.fract_transf_matrix[1][1] 0.022222 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009234 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004031 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S SR # loop_