HEADER OXIDOREDUCTASE 23-JUL-04 1U3W TITLE CRYSTAL STRUCTURE OF HUMAN ALCOHOL DEHYDROGENASE GAMMA-2-GAMMA-2 TITLE 2 ISOFORM COMPLEXED WITH N-1-METHYLHEPTYLFORMAMIDE DETERMINED TO 1.45 TITLE 3 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE GAMMA CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALCOHOL DEHYDROGENASE GAMMA-2-GAMMA-2 ISOFORM; COMPND 5 EC: 1.1.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADH1C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5-ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK2233 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.J.GIBBONS,T.D.HURLEY REVDAT 4 25-OCT-23 1U3W 1 REMARK LINK REVDAT 3 11-OCT-17 1U3W 1 REMARK REVDAT 2 24-FEB-09 1U3W 1 VERSN REVDAT 1 26-OCT-04 1U3W 0 JRNL AUTH B.J.GIBBONS,T.D.HURLEY JRNL TITL STRUCTURE OF THREE CLASS I HUMAN ALCOHOL DEHYDROGENASES JRNL TITL 2 COMPLEXED WITH ISOENZYME SPECIFIC FORMAMIDE INHIBITORS JRNL REF BIOCHEMISTRY V. 43 12555 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15449945 JRNL DOI 10.1021/BI0489107 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 110343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5964 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8042 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 424 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 819 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.33000 REMARK 3 B22 (A**2) : 2.35000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5772 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7814 ; 1.842 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 746 ; 6.202 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 918 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4166 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2933 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 635 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.034 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 65 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3706 ; 1.163 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5986 ; 1.863 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2066 ; 2.801 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1828 ; 4.551 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1U3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110343 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 62.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1HT0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML ENZYME, 4MM NAD+, 50MM TRIS REMARK 280 -HCL, AND 17-19% PEG 6000, PH 9.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.56250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASSYMETRIC UNIT CONTAINS ONE HOMODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1419 O HOH A 1651 2.16 REMARK 500 OD2 ASP A 227 O HOH A 1845 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 319 CE1 PHE A 319 CZ 0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 153 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 223 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 363 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP B 125 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 153 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 343 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 109 -4.57 -141.04 REMARK 500 LEU A 116 -65.39 -98.54 REMARK 500 CYS A 174 -74.17 -158.70 REMARK 500 ILE A 269 -52.60 -129.92 REMARK 500 SER A 298 50.85 -118.58 REMARK 500 ILE A 368 -91.28 -96.58 REMARK 500 HIS B 67 -0.65 -151.63 REMARK 500 ASN B 109 -3.89 -141.31 REMARK 500 CYS B 174 -75.25 -155.95 REMARK 500 ILE B 269 -54.76 -124.02 REMARK 500 ILE B 368 -90.75 -92.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 HIS A 67 NE2 105.0 REMARK 620 3 CYS A 174 SG 131.6 115.3 REMARK 620 4 FXY A1378 O10 99.5 87.9 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 100 SG 106.7 REMARK 620 3 CYS A 103 SG 117.0 107.1 REMARK 620 4 CYS A 111 SG 103.0 119.4 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 HIS B 67 NE2 107.1 REMARK 620 3 CYS B 174 SG 128.8 115.3 REMARK 620 4 FXY B2378 O10 105.3 87.0 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 100 SG 108.2 REMARK 620 3 CYS B 103 SG 114.9 107.9 REMARK 620 4 CYS B 111 SG 104.6 117.5 103.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 2377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FXY A 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FXY B 2378 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HT0 RELATED DB: PDB REMARK 900 HUMAN ALCOHOL DEHYDROGENASE, GAMMA-2-GAMMA-2 ISOENZYME REMARK 900 RELATED ID: 1U3T RELATED DB: PDB REMARK 900 HUMAN ALCOHOL DEHYDROGENASE ALPHA-ALPHA ISOFORM COMPLEXED WITH N- REMARK 900 CYCLOPENTYL-N-CYCLOBUTYLFORMAMIDE DETERMINED TO 2.5 ANGSTROM REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1U3U RELATED DB: PDB REMARK 900 HUMAN ALCOHOL DEHYDROGENASE BETA-1-BETA-1 ISOFORM COMPLEXED WITH N- REMARK 900 BENZYLFORMAMIDE DETERMINED TO 1.6 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1U3V RELATED DB: PDB REMARK 900 HUMAN ALCOHOL DEHYDROGENASE BETA-1-BETA-1 ISOFORM COMPLEXED WITH N- REMARK 900 HEPTYLFORMAMIDE DETERMINED TO 1.65 ANGSTROM RESOLUTION DBREF 1U3W A 1 374 UNP P00326 ADHG_HUMAN 1 374 DBREF 1U3W B 1 374 UNP P00326 ADHG_HUMAN 1 374 SEQADV 1U3W GLN A 271 UNP P00326 ARG 271 SEE REMARK 999 SEQADV 1U3W VAL A 349 UNP P00326 ILE 349 SEE REMARK 999 SEQADV 1U3W GLN B 271 UNP P00326 ARG 271 SEE REMARK 999 SEQADV 1U3W VAL B 349 UNP P00326 ILE 349 SEE REMARK 999 SEQRES 1 A 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 A 374 LEU TRP GLU LEU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 A 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 A 374 MET VAL ALA ALA GLY ILE CYS ARG SER ASP GLU HIS VAL SEQRES 5 A 374 VAL SER GLY ASN LEU VAL THR PRO LEU PRO VAL ILE LEU SEQRES 6 A 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER VAL GLY GLU SEQRES 7 A 374 GLY VAL THR THR VAL LYS PRO GLY ASP LYS VAL ILE PRO SEQRES 8 A 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG ILE CYS LYS SEQRES 9 A 374 ASN PRO GLU SER ASN TYR CYS LEU LYS ASN ASP LEU GLY SEQRES 10 A 374 ASN PRO ARG GLY THR LEU GLN ASP GLY THR ARG ARG PHE SEQRES 11 A 374 THR CYS SER GLY LYS PRO ILE HIS HIS PHE VAL GLY VAL SEQRES 12 A 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ASN ALA SEQRES 13 A 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 A 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 A 374 ALA VAL LYS VAL ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 A 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER VAL VAL SEQRES 17 A 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE ALA SEQRES 18 A 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 A 374 LEU GLY ALA THR GLU CYS ILE ASN PRO GLN ASP TYR LYS SEQRES 20 A 374 LYS PRO ILE GLN GLU VAL LEU LYS GLU MET THR ASP GLY SEQRES 21 A 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY GLN LEU ASP SEQRES 22 A 374 THR MET MET ALA SER LEU LEU CYS CYS HIS GLU ALA CYS SEQRES 23 A 374 GLY THR SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 A 374 ASN LEU SER ILE ASN PRO MET LEU LEU LEU THR GLY ARG SEQRES 25 A 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 A 374 GLU SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 A 374 LYS PHE SER LEU ASP ALA LEU ILE THR ASN VAL LEU PRO SEQRES 28 A 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 A 374 GLY LYS SER ILE ARG THR VAL LEU THR PHE SEQRES 1 B 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 B 374 LEU TRP GLU LEU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 B 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 B 374 MET VAL ALA ALA GLY ILE CYS ARG SER ASP GLU HIS VAL SEQRES 5 B 374 VAL SER GLY ASN LEU VAL THR PRO LEU PRO VAL ILE LEU SEQRES 6 B 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER VAL GLY GLU SEQRES 7 B 374 GLY VAL THR THR VAL LYS PRO GLY ASP LYS VAL ILE PRO SEQRES 8 B 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG ILE CYS LYS SEQRES 9 B 374 ASN PRO GLU SER ASN TYR CYS LEU LYS ASN ASP LEU GLY SEQRES 10 B 374 ASN PRO ARG GLY THR LEU GLN ASP GLY THR ARG ARG PHE SEQRES 11 B 374 THR CYS SER GLY LYS PRO ILE HIS HIS PHE VAL GLY VAL SEQRES 12 B 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ASN ALA SEQRES 13 B 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 B 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 B 374 ALA VAL LYS VAL ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 B 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER VAL VAL SEQRES 17 B 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE ALA SEQRES 18 B 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 B 374 LEU GLY ALA THR GLU CYS ILE ASN PRO GLN ASP TYR LYS SEQRES 20 B 374 LYS PRO ILE GLN GLU VAL LEU LYS GLU MET THR ASP GLY SEQRES 21 B 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY GLN LEU ASP SEQRES 22 B 374 THR MET MET ALA SER LEU LEU CYS CYS HIS GLU ALA CYS SEQRES 23 B 374 GLY THR SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 B 374 ASN LEU SER ILE ASN PRO MET LEU LEU LEU THR GLY ARG SEQRES 25 B 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 B 374 GLU SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 B 374 LYS PHE SER LEU ASP ALA LEU ILE THR ASN VAL LEU PRO SEQRES 28 B 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 B 374 GLY LYS SER ILE ARG THR VAL LEU THR PHE HET ZN A 375 1 HET ZN A 376 1 HET NAD A1377 44 HET FXY A1378 11 HET ZN B 375 1 HET ZN B 376 1 HET NAD B2377 44 HET FXY B2378 11 HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM FXY 1-METHYLHEPTYLFORMAMIDE HETSYN FXY N-1-METHYLHEPTYLFORMAMIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 6 FXY 2(C9 H19 N O) FORMUL 11 HOH *819(H2 O) HELIX 1 1 CYS A 46 SER A 54 1 9 HELIX 2 2 CYS A 100 ASN A 105 1 6 HELIX 3 3 PRO A 165 CYS A 170 1 6 HELIX 4 4 LEU A 171 GLY A 173 5 3 HELIX 5 5 CYS A 174 LYS A 185 1 12 HELIX 6 6 GLY A 201 ALA A 214 1 14 HELIX 7 7 ASN A 225 ASP A 227 5 3 HELIX 8 8 LYS A 228 LEU A 235 1 8 HELIX 9 9 ASN A 242 TYR A 246 5 5 HELIX 10 10 PRO A 249 THR A 258 1 10 HELIX 11 11 GLN A 271 CYS A 282 1 12 HELIX 12 12 PRO A 305 THR A 310 1 6 HELIX 13 13 ILE A 318 PHE A 322 5 5 HELIX 14 14 LYS A 323 ALA A 337 1 15 HELIX 15 15 LEU A 342 ALA A 344 5 3 HELIX 16 16 LYS A 354 SER A 364 1 11 HELIX 17 17 CYS B 46 SER B 54 1 9 HELIX 18 18 CYS B 100 ASN B 105 1 6 HELIX 19 19 PRO B 165 CYS B 170 1 6 HELIX 20 20 LEU B 171 GLY B 173 5 3 HELIX 21 21 CYS B 174 LYS B 185 1 12 HELIX 22 22 GLY B 201 ALA B 214 1 14 HELIX 23 23 ASN B 225 ASP B 227 5 3 HELIX 24 24 LYS B 228 LEU B 235 1 8 HELIX 25 25 ASN B 242 TYR B 246 5 5 HELIX 26 26 PRO B 249 THR B 258 1 10 HELIX 27 27 GLN B 271 CYS B 282 1 12 HELIX 28 28 PRO B 305 THR B 310 1 6 HELIX 29 29 ILE B 318 PHE B 322 5 5 HELIX 30 30 LYS B 323 ALA B 337 1 15 HELIX 31 31 LEU B 342 ALA B 344 5 3 HELIX 32 32 LYS B 354 SER B 364 1 11 SHEET 1 A 5 VAL A 63 ILE A 64 0 SHEET 2 A 5 ILE A 7 LEU A 14 -1 N LEU A 14 O VAL A 63 SHEET 3 A 5 SER A 22 VAL A 28 -1 O SER A 22 N VAL A 13 SHEET 4 A 5 PHE A 130 CYS A 132 -1 O THR A 131 N GLU A 27 SHEET 5 A 5 LYS A 135 ILE A 137 -1 O LYS A 135 N CYS A 132 SHEET 1 B 5 TYR A 149 ASP A 153 0 SHEET 2 B 5 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 B 5 ALA A 69 VAL A 76 -1 O GLU A 74 N ARG A 37 SHEET 4 B 5 LYS A 88 PRO A 91 -1 O VAL A 89 N GLY A 71 SHEET 5 B 5 VAL A 157 LYS A 159 -1 O ALA A 158 N ILE A 90 SHEET 1 C 4 TYR A 149 ASP A 153 0 SHEET 2 C 4 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 C 4 ARG A 369 THR A 373 -1 O LEU A 372 N ALA A 43 SHEET 4 C 4 ILE A 346 PRO A 351 1 N LEU A 350 O THR A 373 SHEET 1 D12 GLU A 239 ILE A 241 0 SHEET 2 D12 ARG A 218 VAL A 222 1 N ALA A 221 O GLU A 239 SHEET 3 D12 THR A 194 PHE A 198 1 N VAL A 197 O VAL A 222 SHEET 4 D12 PHE A 264 GLU A 267 1 O PHE A 266 N PHE A 198 SHEET 5 D12 THR A 288 ILE A 291 1 O VAL A 290 N SER A 265 SHEET 6 D12 THR A 313 GLY A 316 1 O THR A 313 N SER A 289 SHEET 7 D12 THR B 313 GLY B 316 -1 O TRP B 314 N TRP A 314 SHEET 8 D12 THR B 288 ILE B 291 1 N SER B 289 O THR B 313 SHEET 9 D12 PHE B 264 GLU B 267 1 N SER B 265 O VAL B 290 SHEET 10 D12 THR B 194 PHE B 198 1 N PHE B 198 O PHE B 266 SHEET 11 D12 ARG B 218 VAL B 222 1 O ILE B 220 N CYS B 195 SHEET 12 D12 GLU B 239 ILE B 241 1 O ILE B 241 N ALA B 221 SHEET 1 E 2 LEU A 301 ILE A 303 0 SHEET 2 E 2 LEU B 301 ILE B 303 -1 O LEU B 301 N ILE A 303 SHEET 1 F 5 VAL B 63 ILE B 64 0 SHEET 2 F 5 ILE B 7 LEU B 14 -1 N LEU B 14 O VAL B 63 SHEET 3 F 5 SER B 22 VAL B 28 -1 O VAL B 26 N CYS B 9 SHEET 4 F 5 PHE B 130 CYS B 132 -1 O THR B 131 N GLU B 27 SHEET 5 F 5 LYS B 135 ILE B 137 -1 O LYS B 135 N CYS B 132 SHEET 1 G 5 TYR B 149 ASP B 153 0 SHEET 2 G 5 GLU B 35 GLY B 44 -1 N ILE B 38 O THR B 150 SHEET 3 G 5 GLU B 68 VAL B 76 -1 O GLU B 68 N GLY B 44 SHEET 4 G 5 LYS B 88 PRO B 91 -1 O VAL B 89 N GLY B 71 SHEET 5 G 5 VAL B 157 LYS B 159 -1 O ALA B 158 N ILE B 90 SHEET 1 H 4 TYR B 149 ASP B 153 0 SHEET 2 H 4 GLU B 35 GLY B 44 -1 N ILE B 38 O THR B 150 SHEET 3 H 4 ARG B 369 THR B 373 -1 O LEU B 372 N ALA B 43 SHEET 4 H 4 ILE B 346 PRO B 351 1 N LEU B 350 O THR B 373 LINK SG CYS A 46 ZN ZN A 376 1555 1555 2.33 LINK NE2 HIS A 67 ZN ZN A 376 1555 1555 2.03 LINK SG CYS A 97 ZN ZN A 375 1555 1555 2.38 LINK SG CYS A 100 ZN ZN A 375 1555 1555 2.42 LINK SG CYS A 103 ZN ZN A 375 1555 1555 2.29 LINK SG CYS A 111 ZN ZN A 375 1555 1555 2.35 LINK SG CYS A 174 ZN ZN A 376 1555 1555 2.04 LINK ZN ZN A 376 O10 FXY A1378 1555 1555 2.30 LINK SG CYS B 46 ZN ZN B 376 1555 1555 2.34 LINK NE2 HIS B 67 ZN ZN B 376 1555 1555 2.07 LINK SG CYS B 97 ZN ZN B 375 1555 1555 2.32 LINK SG CYS B 100 ZN ZN B 375 1555 1555 2.33 LINK SG CYS B 103 ZN ZN B 375 1555 1555 2.32 LINK SG CYS B 111 ZN ZN B 375 1555 1555 2.48 LINK SG CYS B 174 ZN ZN B 376 1555 1555 2.14 LINK ZN ZN B 376 O10 FXY B2378 1555 1555 2.18 CISPEP 1 LEU A 61 PRO A 62 0 2.58 CISPEP 2 LEU B 61 PRO B 62 0 4.12 SITE 1 AC1 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC2 5 CYS A 46 HIS A 67 CYS A 174 NAD A1377 SITE 2 AC2 5 FXY A1378 SITE 1 AC3 4 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 1 AC4 5 CYS B 46 HIS B 67 CYS B 174 NAD B2377 SITE 2 AC4 5 FXY B2378 SITE 1 AC5 33 ARG A 47 SER A 48 HIS A 51 CYS A 174 SITE 2 AC5 33 THR A 178 GLY A 199 GLY A 201 GLY A 202 SITE 3 AC5 33 VAL A 203 ASP A 223 ILE A 224 LYS A 228 SITE 4 AC5 33 VAL A 268 ILE A 269 GLN A 271 THR A 274 SITE 5 AC5 33 VAL A 292 GLY A 293 VAL A 294 ALA A 317 SITE 6 AC5 33 ILE A 318 PHE A 319 LEU A 362 ARG A 369 SITE 7 AC5 33 ZN A 376 FXY A1378 HOH A1379 HOH A1389 SITE 8 AC5 33 HOH A1406 HOH A1464 HOH A1487 HOH A1731 SITE 9 AC5 33 HOH A1818 SITE 1 AC6 34 ARG B 47 SER B 48 HIS B 51 CYS B 174 SITE 2 AC6 34 THR B 178 GLY B 199 GLY B 201 GLY B 202 SITE 3 AC6 34 VAL B 203 ASP B 223 ILE B 224 LYS B 228 SITE 4 AC6 34 VAL B 268 ILE B 269 GLN B 271 VAL B 292 SITE 5 AC6 34 GLY B 293 VAL B 294 ALA B 317 ILE B 318 SITE 6 AC6 34 PHE B 319 LEU B 362 ARG B 369 ZN B 376 SITE 7 AC6 34 FXY B2378 HOH B2379 HOH B2390 HOH B2416 SITE 8 AC6 34 HOH B2440 HOH B2497 HOH B2531 HOH B2618 SITE 9 AC6 34 HOH B2659 HOH B2679 SITE 1 AC7 7 CYS A 46 SER A 48 HIS A 67 PHE A 93 SITE 2 AC7 7 CYS A 174 ZN A 376 NAD A1377 SITE 1 AC8 8 MET A 306 CYS B 46 SER B 48 HIS B 67 SITE 2 AC8 8 PHE B 93 CYS B 174 ZN B 376 NAD B2377 CRYST1 55.361 67.125 92.725 90.00 103.75 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018063 0.000000 0.004418 0.00000 SCALE2 0.000000 0.014898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011103 0.00000