HEADER PROTEIN BINDING 23-JUL-04 1U4A TITLE SOLUTION STRUCTURE OF HUMAN SUMO-3 C47S COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN SMT3A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN; COMPND 5 SYNONYM: SMALL UBIQUITIN-LIKE MODIFIER PROTEIN 3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BRAIN; SOURCE 6 GENE: SUMO3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-22B(+) KEYWDS BETA BETA ALPHA BETA BETA ALPHA BETA FOLD, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.DING,Y.XU,H.DAI,Y.TANG,J.WU,Y.SHI REVDAT 4 29-MAY-24 1U4A 1 REMARK REVDAT 3 10-NOV-21 1U4A 1 REMARK SEQADV REVDAT 2 24-FEB-09 1U4A 1 VERSN REVDAT 1 08-MAR-05 1U4A 0 JRNL AUTH H.DING,Y.XU,Q.CHEN,H.DAI,Y.TANG,J.WU,Y.SHI JRNL TITL SOLUTION STRUCTURE OF HUMAN SUMO-3 C47S AND ITS BINDING JRNL TITL 2 SURFACE FOR UBC9 JRNL REF BIOCHEMISTRY V. 44 2790 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15723523 JRNL DOI 10.1021/BI0477586 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.2, MOLMOL 2K.2 REMARK 3 AUTHORS : F. DELAGLIO (NMRPIPE), KORADI (MOLMOL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1540 RESTRAINTS, 1406 ARE REMARK 3 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 78 DIHEDRAL ANGLE RESTRAINTS, 56 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS REMARK 4 REMARK 4 1U4A COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023226. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.25 REMARK 210 IONIC STRENGTH : 25MM PHOSPHATE BUFFER, 75MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8MM 15N-LABELED PROTEIN; 0.6MM REMARK 210 13C,15N-LABELED PROTEIN REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3, CNS 1.1, CSI 1.0, REMARK 210 MOLMOL 2K.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 93 REMARK 465 GLU A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 25 31.84 -90.06 REMARK 500 1 ARG A 35 31.86 -97.86 REMARK 500 1 LEU A 52 -161.39 -122.25 REMARK 500 1 GLN A 56 78.12 -160.84 REMARK 500 1 THR A 71 -57.85 -171.01 REMARK 500 1 ASP A 79 -48.46 -175.01 REMARK 500 1 THR A 90 96.14 69.58 REMARK 500 2 HIS A 36 31.29 -156.93 REMARK 500 2 LEU A 52 -167.72 -71.45 REMARK 500 2 GLN A 56 77.70 -160.79 REMARK 500 2 THR A 71 -55.49 -164.08 REMARK 500 2 GLU A 78 69.68 -152.73 REMARK 500 2 ASP A 79 -69.38 -172.63 REMARK 500 2 GLN A 87 33.25 -98.88 REMARK 500 2 GLN A 88 153.62 68.44 REMARK 500 3 ASP A 25 32.30 -96.45 REMARK 500 3 ARG A 35 39.62 -92.48 REMARK 500 3 HIS A 36 33.39 -147.17 REMARK 500 3 LEU A 52 -154.38 -112.20 REMARK 500 3 GLN A 56 77.56 -160.67 REMARK 500 3 PRO A 65 106.82 -54.09 REMARK 500 3 THR A 71 -55.19 -168.43 REMARK 500 3 ASP A 79 -56.36 -169.07 REMARK 500 4 ASP A 15 97.77 63.14 REMARK 500 4 ARG A 35 33.20 -94.00 REMARK 500 4 HIS A 36 28.71 -145.30 REMARK 500 4 LEU A 52 -163.42 -128.62 REMARK 500 4 MET A 54 30.30 -96.32 REMARK 500 4 GLN A 56 78.02 -160.23 REMARK 500 4 THR A 71 -56.72 -166.04 REMARK 500 4 GLU A 78 -52.35 -126.19 REMARK 500 4 ASP A 79 -58.09 -148.94 REMARK 500 4 THR A 90 -60.34 -146.63 REMARK 500 5 ASP A 25 39.10 -92.62 REMARK 500 5 HIS A 36 40.89 -172.03 REMARK 500 5 LEU A 52 -161.00 -127.33 REMARK 500 5 GLN A 56 77.75 -160.69 REMARK 500 5 PRO A 65 96.71 -53.96 REMARK 500 5 THR A 69 32.74 -89.42 REMARK 500 5 THR A 71 -57.15 -166.00 REMARK 500 5 GLU A 78 -59.21 -148.35 REMARK 500 5 GLU A 80 93.71 -166.14 REMARK 500 5 THR A 90 -53.07 -142.84 REMARK 500 6 ASP A 25 41.17 -178.14 REMARK 500 6 SER A 27 106.22 -166.53 REMARK 500 6 ARG A 35 59.49 -94.07 REMARK 500 6 HIS A 36 39.84 -168.62 REMARK 500 6 GLN A 50 -70.19 -73.45 REMARK 500 6 LEU A 52 -159.92 -119.43 REMARK 500 6 GLN A 56 77.71 -160.21 REMARK 500 REMARK 500 THIS ENTRY HAS 183 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A5R RELATED DB: PDB REMARK 900 THE FIRST DETERMINED 3D STRUCTURE OF HUMAN SUMO FAMILY DBREF 1U4A A 14 92 UNP P55854 SUMO3_HUMAN 14 92 SEQADV 1U4A SER A 47 UNP P55854 CYS 47 ENGINEERED MUTATION SEQADV 1U4A LEU A 93 UNP P55854 EXPRESSION TAG SEQADV 1U4A GLU A 94 UNP P55854 EXPRESSION TAG SEQADV 1U4A HIS A 95 UNP P55854 EXPRESSION TAG SEQADV 1U4A HIS A 96 UNP P55854 EXPRESSION TAG SEQADV 1U4A HIS A 97 UNP P55854 EXPRESSION TAG SEQADV 1U4A HIS A 98 UNP P55854 EXPRESSION TAG SEQADV 1U4A HIS A 99 UNP P55854 EXPRESSION TAG SEQADV 1U4A HIS A 100 UNP P55854 EXPRESSION TAG SEQRES 1 A 87 ASN ASP HIS ILE ASN LEU LYS VAL ALA GLY GLN ASP GLY SEQRES 2 A 87 SER VAL VAL GLN PHE LYS ILE LYS ARG HIS THR PRO LEU SEQRES 3 A 87 SER LYS LEU MET LYS ALA TYR SER GLU ARG GLN GLY LEU SEQRES 4 A 87 SER MET ARG GLN ILE ARG PHE ARG PHE ASP GLY GLN PRO SEQRES 5 A 87 ILE ASN GLU THR ASP THR PRO ALA GLN LEU GLU MET GLU SEQRES 6 A 87 ASP GLU ASP THR ILE ASP VAL PHE GLN GLN GLN THR GLY SEQRES 7 A 87 GLY LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 PRO A 38 GLY A 51 1 14 HELIX 2 2 THR A 71 MET A 77 1 7 SHEET 1 A 5 SER A 27 ILE A 33 0 SHEET 2 A 5 ILE A 17 GLY A 23 -1 N GLY A 23 O SER A 27 SHEET 3 A 5 ASP A 81 PHE A 86 1 O ILE A 83 N ALA A 22 SHEET 4 A 5 ARG A 58 ARG A 60 -1 N ARG A 58 O PHE A 86 SHEET 5 A 5 PRO A 65 ILE A 66 -1 O ILE A 66 N PHE A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1