data_1U53 # _entry.id 1U53 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1U53 RCSB RCSB023255 WWPDB D_1000023255 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1QNX . unspecified PDB 1CFE . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1U53 _pdbx_database_status.recvd_initial_deposition_date 2004-07-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Asojo, O.A.' 1 'Goud, G.' 2 'Dhar, K.' 3 'Loukas, A.' 4 'Zhan, B.' 5 'Deumic, V.' 6 'Liu, S.' 7 'Borgstahl, G.E.O.' 8 'Hotez, P.J.' 9 # _citation.id primary _citation.title ;X-ray structure of Na-ASP-2, a pathogenesis-related-1 protein from the nematode parasite, Necator americanus, and a vaccine antigen for human hookworm infection. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 346 _citation.page_first 801 _citation.page_last 814 _citation.year 2005 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15713464 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2004.12.023 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Asojo, O.A.' 1 primary 'Goud, G.' 2 primary 'Dhar, K.' 3 primary 'Loukas, A.' 4 primary 'Zhan, B.' 5 primary 'Deumic, V.' 6 primary 'Liu, S.' 7 primary 'Borgstahl, G.E.' 8 primary 'Hotez, P.J.' 9 # _cell.entry_id 1U53 _cell.length_a 37.890 _cell.length_b 51.540 _cell.length_c 43.630 _cell.angle_alpha 90.00 _cell.angle_beta 114.06 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U53 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'secreted protein ASP-2' 21214.115 1 ? ? ? ? 2 water nat water 18.015 201 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AEAEFGCPDNGMSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVFKHSQPNQR KGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSNMCYVV CQYGPAGNMMGKDIYEKGEPCSKCENCDKEKGLCSA ; _entity_poly.pdbx_seq_one_letter_code_can ;AEAEFGCPDNGMSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVFKHSQPNQR KGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSNMCYVV CQYGPAGNMMGKDIYEKGEPCSKCENCDKEKGLCSA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLU n 1 3 ALA n 1 4 GLU n 1 5 PHE n 1 6 GLY n 1 7 CYS n 1 8 PRO n 1 9 ASP n 1 10 ASN n 1 11 GLY n 1 12 MET n 1 13 SER n 1 14 GLU n 1 15 GLU n 1 16 ALA n 1 17 ARG n 1 18 GLN n 1 19 LYS n 1 20 PHE n 1 21 LEU n 1 22 GLU n 1 23 MET n 1 24 HIS n 1 25 ASN n 1 26 SER n 1 27 LEU n 1 28 ARG n 1 29 SER n 1 30 SER n 1 31 VAL n 1 32 ALA n 1 33 LEU n 1 34 GLY n 1 35 GLN n 1 36 ALA n 1 37 LYS n 1 38 ASP n 1 39 GLY n 1 40 ALA n 1 41 GLY n 1 42 GLY n 1 43 ASN n 1 44 ALA n 1 45 PRO n 1 46 LYS n 1 47 ALA n 1 48 ALA n 1 49 LYS n 1 50 MET n 1 51 LYS n 1 52 THR n 1 53 MET n 1 54 ALA n 1 55 TYR n 1 56 ASP n 1 57 CYS n 1 58 GLU n 1 59 VAL n 1 60 GLU n 1 61 LYS n 1 62 THR n 1 63 ALA n 1 64 MET n 1 65 ASN n 1 66 ASN n 1 67 ALA n 1 68 LYS n 1 69 GLN n 1 70 CYS n 1 71 VAL n 1 72 PHE n 1 73 LYS n 1 74 HIS n 1 75 SER n 1 76 GLN n 1 77 PRO n 1 78 ASN n 1 79 GLN n 1 80 ARG n 1 81 LYS n 1 82 GLY n 1 83 LEU n 1 84 GLY n 1 85 GLU n 1 86 ASN n 1 87 ILE n 1 88 PHE n 1 89 MET n 1 90 SER n 1 91 SER n 1 92 ASP n 1 93 SER n 1 94 GLY n 1 95 MET n 1 96 ASP n 1 97 LYS n 1 98 ALA n 1 99 LYS n 1 100 ALA n 1 101 ALA n 1 102 GLU n 1 103 GLN n 1 104 ALA n 1 105 SER n 1 106 LYS n 1 107 ALA n 1 108 TRP n 1 109 PHE n 1 110 GLY n 1 111 GLU n 1 112 LEU n 1 113 ALA n 1 114 GLU n 1 115 LYS n 1 116 GLY n 1 117 VAL n 1 118 GLY n 1 119 GLN n 1 120 ASN n 1 121 LEU n 1 122 LYS n 1 123 LEU n 1 124 THR n 1 125 GLY n 1 126 GLY n 1 127 LEU n 1 128 PHE n 1 129 SER n 1 130 ARG n 1 131 GLY n 1 132 VAL n 1 133 GLY n 1 134 HIS n 1 135 TYR n 1 136 THR n 1 137 GLN n 1 138 MET n 1 139 VAL n 1 140 TRP n 1 141 GLN n 1 142 GLU n 1 143 THR n 1 144 VAL n 1 145 LYS n 1 146 LEU n 1 147 GLY n 1 148 CYS n 1 149 TYR n 1 150 VAL n 1 151 GLU n 1 152 ALA n 1 153 CYS n 1 154 SER n 1 155 ASN n 1 156 MET n 1 157 CYS n 1 158 TYR n 1 159 VAL n 1 160 VAL n 1 161 CYS n 1 162 GLN n 1 163 TYR n 1 164 GLY n 1 165 PRO n 1 166 ALA n 1 167 GLY n 1 168 ASN n 1 169 MET n 1 170 MET n 1 171 GLY n 1 172 LYS n 1 173 ASP n 1 174 ILE n 1 175 TYR n 1 176 GLU n 1 177 LYS n 1 178 GLY n 1 179 GLU n 1 180 PRO n 1 181 CYS n 1 182 SER n 1 183 LYS n 1 184 CYS n 1 185 GLU n 1 186 ASN n 1 187 CYS n 1 188 ASP n 1 189 LYS n 1 190 GLU n 1 191 LYS n 1 192 GLY n 1 193 LEU n 1 194 CYS n 1 195 SER n 1 196 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Necator _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Necator americanus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 51031 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus Pichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7Z1H1_NECAM _struct_ref.pdbx_db_accession Q7Z1H1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AYSKAGCPDNGMSEEARQKFLELHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVFKHSQPNQR KGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSNMCYVV CQYGPAGNMMGKDIYEKGEPCSKCENCDKEKGLCSA ; _struct_ref.pdbx_align_begin 15 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1U53 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 196 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7Z1H1 _struct_ref_seq.db_align_beg 15 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 210 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -4 _struct_ref_seq.pdbx_auth_seq_align_end 191 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1U53 GLU A 2 ? UNP Q7Z1H1 TYR 16 'CLONING ARTIFACT' -3 1 1 1U53 ALA A 3 ? UNP Q7Z1H1 SER 17 'CLONING ARTIFACT' -2 2 1 1U53 GLU A 4 ? UNP Q7Z1H1 LYS 18 'CLONING ARTIFACT' -1 3 1 1U53 PHE A 5 ? UNP Q7Z1H1 ALA 19 'CLONING ARTIFACT' 0 4 1 1U53 MET A 23 ? UNP Q7Z1H1 LEU 37 'see remark 999' 18 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1U53 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.92 _exptl_crystal.density_percent_sol 35.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '100mM Imidazole, 40% PEG 400, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2003-12-16 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1U53 _reflns.observed_criterion_sigma_I 3 _reflns.observed_criterion_sigma_F 3 _reflns.d_resolution_low 40 _reflns.d_resolution_high 1.56 _reflns.number_obs 17644 _reflns.number_all ? _reflns.percent_possible_obs 80.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.56 _reflns_shell.d_res_low 1.62 _reflns_shell.percent_possible_all 10.7 _reflns_shell.Rmerge_I_obs 0.154 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 1.74 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1U53 _refine.ls_number_reflns_obs 16702 _refine.ls_number_reflns_all 17643 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.00 _refine.ls_d_res_high 1.56 _refine.ls_percent_reflns_obs 80.99 _refine.ls_R_factor_obs 0.17777 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17511 _refine.ls_R_factor_R_free 0.22355 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.3 _refine.ls_number_reflns_R_free 938 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.B_iso_mean 18.570 _refine.aniso_B[1][1] 0.50 _refine.aniso_B[2][2] -0.36 _refine.aniso_B[3][3] -0.39 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.32 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL PARAMETERS FOR MASK CACLULATION' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.121 _refine.pdbx_overall_ESU_R_Free 0.120 _refine.overall_SU_ML 0.058 _refine.overall_SU_B 1.550 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1446 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 201 _refine_hist.number_atoms_total 1647 _refine_hist.d_res_high 1.56 _refine_hist.d_res_low 25.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1475 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.678 1.954 ? 1972 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 11.196 5.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.664 26.094 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.973 15.000 ? 273 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.884 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.120 0.200 ? 198 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1112 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.261 0.300 ? 717 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.311 0.500 ? 1022 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.231 0.500 ? 306 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.309 0.300 ? 53 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.228 0.500 ? 44 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.721 2.000 ? 979 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.332 3.000 ? 1489 'X-RAY DIFFRACTION' ? r_scbond_it 2.216 2.000 ? 573 'X-RAY DIFFRACTION' ? r_scangle_it 3.225 3.000 ? 483 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.563 _refine_ls_shell.d_res_low 1.604 _refine_ls_shell.number_reflns_R_work 133 _refine_ls_shell.R_factor_R_work 0.279 _refine_ls_shell.percent_reflns_obs 9.15 _refine_ls_shell.R_factor_R_free 0.349 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 11 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1U53 _struct.title ;Novel X-Ray Structure of Na-ASP-2, a PR-1 protein from the nematode parasite Necator americanus and a vaccine antigen for human hookworm infection ; _struct.pdbx_descriptor 'secreted protein ASP-2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1U53 _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 13 ? LEU A 33 ? SER A 8 LEU A 28 1 ? 21 HELX_P HELX_P2 2 ASP A 56 ? LYS A 68 ? ASP A 51 LYS A 63 1 ? 13 HELX_P HELX_P3 3 GLN A 76 ? ARG A 80 ? GLN A 71 ARG A 75 5 ? 5 HELX_P HELX_P4 4 ASP A 96 ? GLY A 110 ? ASP A 91 GLY A 105 1 ? 15 HELX_P HELX_P5 5 GLY A 110 ? GLY A 116 ? GLY A 105 GLY A 111 1 ? 7 HELX_P HELX_P6 6 THR A 124 ? SER A 129 ? THR A 119 SER A 124 1 ? 6 HELX_P HELX_P7 7 VAL A 132 ? VAL A 139 ? VAL A 127 VAL A 134 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 57 SG ? ? A CYS 2 A CYS 52 1_555 ? ? ? ? ? ? ? 2.012 ? disulf2 disulf ? ? A CYS 70 SG ? ? ? 1_555 A CYS 153 SG ? ? A CYS 65 A CYS 148 1_555 ? ? ? ? ? ? ? 2.069 ? disulf3 disulf ? ? A CYS 148 SG ? ? ? 1_555 A CYS 161 SG ? ? A CYS 143 A CYS 156 1_555 ? ? ? ? ? ? ? 2.089 ? disulf4 disulf ? ? A CYS 181 SG ? ? ? 1_555 A CYS 187 SG ? ? A CYS 176 A CYS 182 1_555 ? ? ? ? ? ? ? 2.030 ? disulf5 disulf ? ? A CYS 184 SG ? ? ? 1_555 A CYS 194 SG ? ? A CYS 179 A CYS 189 1_555 ? ? ? ? ? ? ? 2.050 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 54 ? TYR A 55 ? ALA A 49 TYR A 50 A 2 LYS A 145 ? ALA A 152 ? LYS A 140 ALA A 147 A 3 CYS A 157 ? GLY A 164 ? CYS A 152 GLY A 159 A 4 GLY A 84 ? SER A 90 ? GLY A 79 SER A 85 B 1 ASN A 186 ? ASP A 188 ? ASN A 181 ASP A 183 B 2 LEU A 193 ? ALA A 196 ? LEU A 188 ALA A 191 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 54 ? N ALA A 49 O LEU A 146 ? O LEU A 141 A 2 3 N GLY A 147 ? N GLY A 142 O GLN A 162 ? O GLN A 157 A 3 4 O TYR A 163 ? O TYR A 158 N GLY A 84 ? N GLY A 79 B 1 2 N ASP A 188 ? N ASP A 183 O LEU A 193 ? O LEU A 188 # _database_PDB_matrix.entry_id 1U53 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1U53 _atom_sites.fract_transf_matrix[1][1] 0.026392 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011784 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019402 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025101 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -4 ? ? ? A . n A 1 2 GLU 2 -3 ? ? ? A . n A 1 3 ALA 3 -2 ? ? ? A . n A 1 4 GLU 4 -1 -1 GLU GLU A . n A 1 5 PHE 5 0 0 PHE PHE A . n A 1 6 GLY 6 1 1 GLY GLY A . n A 1 7 CYS 7 2 2 CYS CYS A . n A 1 8 PRO 8 3 3 PRO PRO A . n A 1 9 ASP 9 4 4 ASP ASP A . n A 1 10 ASN 10 5 5 ASN ASN A . n A 1 11 GLY 11 6 6 GLY GLY A . n A 1 12 MET 12 7 7 MET MET A . n A 1 13 SER 13 8 8 SER SER A . n A 1 14 GLU 14 9 9 GLU GLU A . n A 1 15 GLU 15 10 10 GLU GLU A . n A 1 16 ALA 16 11 11 ALA ALA A . n A 1 17 ARG 17 12 12 ARG ARG A . n A 1 18 GLN 18 13 13 GLN GLN A . n A 1 19 LYS 19 14 14 LYS LYS A . n A 1 20 PHE 20 15 15 PHE PHE A . n A 1 21 LEU 21 16 16 LEU LEU A . n A 1 22 GLU 22 17 17 GLU GLU A . n A 1 23 MET 23 18 18 MET MET A . n A 1 24 HIS 24 19 19 HIS HIS A . n A 1 25 ASN 25 20 20 ASN ASN A . n A 1 26 SER 26 21 21 SER SER A . n A 1 27 LEU 27 22 22 LEU LEU A . n A 1 28 ARG 28 23 23 ARG ARG A . n A 1 29 SER 29 24 24 SER SER A . n A 1 30 SER 30 25 25 SER SER A . n A 1 31 VAL 31 26 26 VAL VAL A . n A 1 32 ALA 32 27 27 ALA ALA A . n A 1 33 LEU 33 28 28 LEU LEU A . n A 1 34 GLY 34 29 29 GLY GLY A . n A 1 35 GLN 35 30 30 GLN GLN A . n A 1 36 ALA 36 31 31 ALA ALA A . n A 1 37 LYS 37 32 32 LYS LYS A . n A 1 38 ASP 38 33 33 ASP ASP A . n A 1 39 GLY 39 34 34 GLY GLY A . n A 1 40 ALA 40 35 35 ALA ALA A . n A 1 41 GLY 41 36 36 GLY GLY A . n A 1 42 GLY 42 37 37 GLY GLY A . n A 1 43 ASN 43 38 38 ASN ASN A . n A 1 44 ALA 44 39 39 ALA ALA A . n A 1 45 PRO 45 40 40 PRO PRO A . n A 1 46 LYS 46 41 41 LYS LYS A . n A 1 47 ALA 47 42 42 ALA ALA A . n A 1 48 ALA 48 43 43 ALA ALA A . n A 1 49 LYS 49 44 44 LYS LYS A . n A 1 50 MET 50 45 45 MET MET A . n A 1 51 LYS 51 46 46 LYS LYS A . n A 1 52 THR 52 47 47 THR THR A . n A 1 53 MET 53 48 48 MET MET A . n A 1 54 ALA 54 49 49 ALA ALA A . n A 1 55 TYR 55 50 50 TYR TYR A . n A 1 56 ASP 56 51 51 ASP ASP A . n A 1 57 CYS 57 52 52 CYS CYS A . n A 1 58 GLU 58 53 53 GLU GLU A . n A 1 59 VAL 59 54 54 VAL VAL A . n A 1 60 GLU 60 55 55 GLU GLU A . n A 1 61 LYS 61 56 56 LYS LYS A . n A 1 62 THR 62 57 57 THR THR A . n A 1 63 ALA 63 58 58 ALA ALA A . n A 1 64 MET 64 59 59 MET MET A . n A 1 65 ASN 65 60 60 ASN ASN A . n A 1 66 ASN 66 61 61 ASN ASN A . n A 1 67 ALA 67 62 62 ALA ALA A . n A 1 68 LYS 68 63 63 LYS LYS A . n A 1 69 GLN 69 64 64 GLN GLN A . n A 1 70 CYS 70 65 65 CYS CYS A . n A 1 71 VAL 71 66 66 VAL VAL A . n A 1 72 PHE 72 67 67 PHE PHE A . n A 1 73 LYS 73 68 68 LYS LYS A . n A 1 74 HIS 74 69 69 HIS HIS A . n A 1 75 SER 75 70 70 SER SER A . n A 1 76 GLN 76 71 71 GLN GLN A . n A 1 77 PRO 77 72 72 PRO PRO A . n A 1 78 ASN 78 73 73 ASN ASN A . n A 1 79 GLN 79 74 74 GLN GLN A . n A 1 80 ARG 80 75 75 ARG ARG A . n A 1 81 LYS 81 76 76 LYS LYS A . n A 1 82 GLY 82 77 77 GLY GLY A . n A 1 83 LEU 83 78 78 LEU LEU A . n A 1 84 GLY 84 79 79 GLY GLY A . n A 1 85 GLU 85 80 80 GLU GLU A . n A 1 86 ASN 86 81 81 ASN ASN A . n A 1 87 ILE 87 82 82 ILE ILE A . n A 1 88 PHE 88 83 83 PHE PHE A . n A 1 89 MET 89 84 84 MET MET A . n A 1 90 SER 90 85 85 SER SER A . n A 1 91 SER 91 86 86 SER SER A . n A 1 92 ASP 92 87 87 ASP ASP A . n A 1 93 SER 93 88 88 SER SER A . n A 1 94 GLY 94 89 89 GLY GLY A . n A 1 95 MET 95 90 90 MET MET A . n A 1 96 ASP 96 91 91 ASP ASP A . n A 1 97 LYS 97 92 92 LYS LYS A . n A 1 98 ALA 98 93 93 ALA ALA A . n A 1 99 LYS 99 94 94 LYS LYS A . n A 1 100 ALA 100 95 95 ALA ALA A . n A 1 101 ALA 101 96 96 ALA ALA A . n A 1 102 GLU 102 97 97 GLU GLU A . n A 1 103 GLN 103 98 98 GLN GLN A . n A 1 104 ALA 104 99 99 ALA ALA A . n A 1 105 SER 105 100 100 SER SER A . n A 1 106 LYS 106 101 101 LYS LYS A . n A 1 107 ALA 107 102 102 ALA ALA A . n A 1 108 TRP 108 103 103 TRP TRP A . n A 1 109 PHE 109 104 104 PHE PHE A . n A 1 110 GLY 110 105 105 GLY GLY A . n A 1 111 GLU 111 106 106 GLU GLU A . n A 1 112 LEU 112 107 107 LEU LEU A . n A 1 113 ALA 113 108 108 ALA ALA A . n A 1 114 GLU 114 109 109 GLU GLU A . n A 1 115 LYS 115 110 110 LYS LYS A . n A 1 116 GLY 116 111 111 GLY GLY A . n A 1 117 VAL 117 112 112 VAL VAL A . n A 1 118 GLY 118 113 113 GLY GLY A . n A 1 119 GLN 119 114 114 GLN GLN A . n A 1 120 ASN 120 115 115 ASN ASN A . n A 1 121 LEU 121 116 116 LEU LEU A . n A 1 122 LYS 122 117 117 LYS LYS A . n A 1 123 LEU 123 118 118 LEU LEU A . n A 1 124 THR 124 119 119 THR THR A . n A 1 125 GLY 125 120 120 GLY GLY A . n A 1 126 GLY 126 121 121 GLY GLY A . n A 1 127 LEU 127 122 122 LEU LEU A . n A 1 128 PHE 128 123 123 PHE PHE A . n A 1 129 SER 129 124 124 SER SER A . n A 1 130 ARG 130 125 125 ARG ARG A . n A 1 131 GLY 131 126 126 GLY GLY A . n A 1 132 VAL 132 127 127 VAL VAL A . n A 1 133 GLY 133 128 128 GLY GLY A . n A 1 134 HIS 134 129 129 HIS HIS A . n A 1 135 TYR 135 130 130 TYR TYR A . n A 1 136 THR 136 131 131 THR THR A . n A 1 137 GLN 137 132 132 GLN GLN A . n A 1 138 MET 138 133 133 MET MET A . n A 1 139 VAL 139 134 134 VAL VAL A . n A 1 140 TRP 140 135 135 TRP TRP A . n A 1 141 GLN 141 136 136 GLN GLN A . n A 1 142 GLU 142 137 137 GLU GLU A . n A 1 143 THR 143 138 138 THR THR A . n A 1 144 VAL 144 139 139 VAL VAL A . n A 1 145 LYS 145 140 140 LYS LYS A . n A 1 146 LEU 146 141 141 LEU LEU A . n A 1 147 GLY 147 142 142 GLY GLY A . n A 1 148 CYS 148 143 143 CYS CYS A . n A 1 149 TYR 149 144 144 TYR TYR A . n A 1 150 VAL 150 145 145 VAL VAL A . n A 1 151 GLU 151 146 146 GLU GLU A . n A 1 152 ALA 152 147 147 ALA ALA A . n A 1 153 CYS 153 148 148 CYS CYS A . n A 1 154 SER 154 149 149 SER SER A . n A 1 155 ASN 155 150 150 ASN ASN A . n A 1 156 MET 156 151 151 MET MET A . n A 1 157 CYS 157 152 152 CYS CYS A . n A 1 158 TYR 158 153 153 TYR TYR A . n A 1 159 VAL 159 154 154 VAL VAL A . n A 1 160 VAL 160 155 155 VAL VAL A . n A 1 161 CYS 161 156 156 CYS CYS A . n A 1 162 GLN 162 157 157 GLN GLN A . n A 1 163 TYR 163 158 158 TYR TYR A . n A 1 164 GLY 164 159 159 GLY GLY A . n A 1 165 PRO 165 160 160 PRO PRO A . n A 1 166 ALA 166 161 161 ALA ALA A . n A 1 167 GLY 167 162 162 GLY GLY A . n A 1 168 ASN 168 163 163 ASN ASN A . n A 1 169 MET 169 164 164 MET MET A . n A 1 170 MET 170 165 165 MET MET A . n A 1 171 GLY 171 166 166 GLY GLY A . n A 1 172 LYS 172 167 167 LYS LYS A . n A 1 173 ASP 173 168 168 ASP ASP A . n A 1 174 ILE 174 169 169 ILE ILE A . n A 1 175 TYR 175 170 170 TYR TYR A . n A 1 176 GLU 176 171 171 GLU GLU A . n A 1 177 LYS 177 172 172 LYS LYS A . n A 1 178 GLY 178 173 173 GLY GLY A . n A 1 179 GLU 179 174 174 GLU GLU A . n A 1 180 PRO 180 175 175 PRO PRO A . n A 1 181 CYS 181 176 176 CYS CYS A . n A 1 182 SER 182 177 177 SER SER A . n A 1 183 LYS 183 178 178 LYS LYS A . n A 1 184 CYS 184 179 179 CYS CYS A . n A 1 185 GLU 185 180 180 GLU GLU A . n A 1 186 ASN 186 181 181 ASN ASN A . n A 1 187 CYS 187 182 182 CYS CYS A . n A 1 188 ASP 188 183 183 ASP ASP A . n A 1 189 LYS 189 184 184 LYS LYS A . n A 1 190 GLU 190 185 185 GLU GLU A . n A 1 191 LYS 191 186 186 LYS LYS A . n A 1 192 GLY 192 187 187 GLY GLY A . n A 1 193 LEU 193 188 188 LEU LEU A . n A 1 194 CYS 194 189 189 CYS CYS A . n A 1 195 SER 195 190 190 SER SER A . n A 1 196 ALA 196 191 191 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 192 133 HOH HOH A . B 2 HOH 2 193 134 HOH HOH A . B 2 HOH 3 194 135 HOH HOH A . B 2 HOH 4 195 136 HOH HOH A . B 2 HOH 5 196 137 HOH HOH A . B 2 HOH 6 197 138 HOH HOH A . B 2 HOH 7 198 139 HOH HOH A . B 2 HOH 8 199 140 HOH HOH A . B 2 HOH 9 200 141 HOH HOH A . B 2 HOH 10 201 142 HOH HOH A . B 2 HOH 11 202 143 HOH HOH A . B 2 HOH 12 203 144 HOH HOH A . B 2 HOH 13 204 145 HOH HOH A . B 2 HOH 14 205 146 HOH HOH A . B 2 HOH 15 206 147 HOH HOH A . B 2 HOH 16 207 148 HOH HOH A . B 2 HOH 17 208 149 HOH HOH A . B 2 HOH 18 209 150 HOH HOH A . B 2 HOH 19 210 151 HOH HOH A . B 2 HOH 20 211 152 HOH HOH A . B 2 HOH 21 212 153 HOH HOH A . B 2 HOH 22 213 154 HOH HOH A . B 2 HOH 23 214 155 HOH HOH A . B 2 HOH 24 215 156 HOH HOH A . B 2 HOH 25 216 157 HOH HOH A . B 2 HOH 26 217 158 HOH HOH A . B 2 HOH 27 218 159 HOH HOH A . B 2 HOH 28 219 160 HOH HOH A . B 2 HOH 29 220 161 HOH HOH A . B 2 HOH 30 221 162 HOH HOH A . B 2 HOH 31 222 163 HOH HOH A . B 2 HOH 32 223 164 HOH HOH A . B 2 HOH 33 224 165 HOH HOH A . B 2 HOH 34 225 166 HOH HOH A . B 2 HOH 35 226 167 HOH HOH A . B 2 HOH 36 227 168 HOH HOH A . B 2 HOH 37 228 169 HOH HOH A . B 2 HOH 38 229 170 HOH HOH A . B 2 HOH 39 230 171 HOH HOH A . B 2 HOH 40 231 172 HOH HOH A . B 2 HOH 41 232 173 HOH HOH A . B 2 HOH 42 233 174 HOH HOH A . B 2 HOH 43 234 175 HOH HOH A . B 2 HOH 44 235 176 HOH HOH A . B 2 HOH 45 236 177 HOH HOH A . B 2 HOH 46 237 178 HOH HOH A . B 2 HOH 47 238 179 HOH HOH A . B 2 HOH 48 239 180 HOH HOH A . B 2 HOH 49 240 181 HOH HOH A . B 2 HOH 50 241 182 HOH HOH A . B 2 HOH 51 242 183 HOH HOH A . B 2 HOH 52 243 184 HOH HOH A . B 2 HOH 53 244 185 HOH HOH A . B 2 HOH 54 245 186 HOH HOH A . B 2 HOH 55 246 187 HOH HOH A . B 2 HOH 56 247 188 HOH HOH A . B 2 HOH 57 248 189 HOH HOH A . B 2 HOH 58 249 190 HOH HOH A . B 2 HOH 59 250 191 HOH HOH A . B 2 HOH 60 251 192 HOH HOH A . B 2 HOH 61 252 193 HOH HOH A . B 2 HOH 62 253 194 HOH HOH A . B 2 HOH 63 254 195 HOH HOH A . B 2 HOH 64 255 196 HOH HOH A . B 2 HOH 65 256 197 HOH HOH A . B 2 HOH 66 257 198 HOH HOH A . B 2 HOH 67 258 199 HOH HOH A . B 2 HOH 68 259 200 HOH HOH A . B 2 HOH 69 260 201 HOH HOH A . B 2 HOH 70 261 202 HOH HOH A . B 2 HOH 71 262 203 HOH HOH A . B 2 HOH 72 263 204 HOH HOH A . B 2 HOH 73 264 205 HOH HOH A . B 2 HOH 74 265 206 HOH HOH A . B 2 HOH 75 266 207 HOH HOH A . B 2 HOH 76 267 208 HOH HOH A . B 2 HOH 77 268 209 HOH HOH A . B 2 HOH 78 269 210 HOH HOH A . B 2 HOH 79 270 211 HOH HOH A . B 2 HOH 80 271 212 HOH HOH A . B 2 HOH 81 272 213 HOH HOH A . B 2 HOH 82 273 214 HOH HOH A . B 2 HOH 83 274 216 HOH HOH A . B 2 HOH 84 275 217 HOH HOH A . B 2 HOH 85 276 218 HOH HOH A . B 2 HOH 86 277 219 HOH HOH A . B 2 HOH 87 278 220 HOH HOH A . B 2 HOH 88 279 221 HOH HOH A . B 2 HOH 89 280 222 HOH HOH A . B 2 HOH 90 281 223 HOH HOH A . B 2 HOH 91 282 224 HOH HOH A . B 2 HOH 92 283 225 HOH HOH A . B 2 HOH 93 284 226 HOH HOH A . B 2 HOH 94 285 227 HOH HOH A . B 2 HOH 95 286 228 HOH HOH A . B 2 HOH 96 287 229 HOH HOH A . B 2 HOH 97 288 230 HOH HOH A . B 2 HOH 98 289 231 HOH HOH A . B 2 HOH 99 290 233 HOH HOH A . B 2 HOH 100 291 234 HOH HOH A . B 2 HOH 101 292 235 HOH HOH A . B 2 HOH 102 293 236 HOH HOH A . B 2 HOH 103 294 237 HOH HOH A . B 2 HOH 104 295 238 HOH HOH A . B 2 HOH 105 296 239 HOH HOH A . B 2 HOH 106 297 240 HOH HOH A . B 2 HOH 107 298 241 HOH HOH A . B 2 HOH 108 299 242 HOH HOH A . B 2 HOH 109 300 243 HOH HOH A . B 2 HOH 110 301 244 HOH HOH A . B 2 HOH 111 302 245 HOH HOH A . B 2 HOH 112 303 246 HOH HOH A . B 2 HOH 113 304 247 HOH HOH A . B 2 HOH 114 305 248 HOH HOH A . B 2 HOH 115 306 249 HOH HOH A . B 2 HOH 116 307 250 HOH HOH A . B 2 HOH 117 308 251 HOH HOH A . B 2 HOH 118 309 254 HOH HOH A . B 2 HOH 119 310 256 HOH HOH A . B 2 HOH 120 311 258 HOH HOH A . B 2 HOH 121 312 260 HOH HOH A . B 2 HOH 122 313 262 HOH HOH A . B 2 HOH 123 314 263 HOH HOH A . B 2 HOH 124 315 264 HOH HOH A . B 2 HOH 125 316 267 HOH HOH A . B 2 HOH 126 317 268 HOH HOH A . B 2 HOH 127 318 270 HOH HOH A . B 2 HOH 128 319 271 HOH HOH A . B 2 HOH 129 320 272 HOH HOH A . B 2 HOH 130 321 273 HOH HOH A . B 2 HOH 131 322 274 HOH HOH A . B 2 HOH 132 323 275 HOH HOH A . B 2 HOH 133 324 276 HOH HOH A . B 2 HOH 134 325 277 HOH HOH A . B 2 HOH 135 326 278 HOH HOH A . B 2 HOH 136 327 279 HOH HOH A . B 2 HOH 137 328 280 HOH HOH A . B 2 HOH 138 329 281 HOH HOH A . B 2 HOH 139 330 282 HOH HOH A . B 2 HOH 140 331 283 HOH HOH A . B 2 HOH 141 332 284 HOH HOH A . B 2 HOH 142 333 285 HOH HOH A . B 2 HOH 143 334 287 HOH HOH A . B 2 HOH 144 335 290 HOH HOH A . B 2 HOH 145 336 291 HOH HOH A . B 2 HOH 146 337 292 HOH HOH A . B 2 HOH 147 338 293 HOH HOH A . B 2 HOH 148 339 294 HOH HOH A . B 2 HOH 149 340 295 HOH HOH A . B 2 HOH 150 341 297 HOH HOH A . B 2 HOH 151 342 298 HOH HOH A . B 2 HOH 152 343 299 HOH HOH A . B 2 HOH 153 344 301 HOH HOH A . B 2 HOH 154 345 302 HOH HOH A . B 2 HOH 155 346 304 HOH HOH A . B 2 HOH 156 347 305 HOH HOH A . B 2 HOH 157 348 306 HOH HOH A . B 2 HOH 158 349 307 HOH HOH A . B 2 HOH 159 350 308 HOH HOH A . B 2 HOH 160 351 309 HOH HOH A . B 2 HOH 161 352 310 HOH HOH A . B 2 HOH 162 353 313 HOH HOH A . B 2 HOH 163 354 314 HOH HOH A . B 2 HOH 164 355 315 HOH HOH A . B 2 HOH 165 356 316 HOH HOH A . B 2 HOH 166 357 317 HOH HOH A . B 2 HOH 167 358 318 HOH HOH A . B 2 HOH 168 359 321 HOH HOH A . B 2 HOH 169 360 322 HOH HOH A . B 2 HOH 170 361 324 HOH HOH A . B 2 HOH 171 362 325 HOH HOH A . B 2 HOH 172 363 326 HOH HOH A . B 2 HOH 173 364 327 HOH HOH A . B 2 HOH 174 365 330 HOH HOH A . B 2 HOH 175 366 333 HOH HOH A . B 2 HOH 176 367 334 HOH HOH A . B 2 HOH 177 368 335 HOH HOH A . B 2 HOH 178 369 336 HOH HOH A . B 2 HOH 179 370 337 HOH HOH A . B 2 HOH 180 371 339 HOH HOH A . B 2 HOH 181 372 341 HOH HOH A . B 2 HOH 182 373 342 HOH HOH A . B 2 HOH 183 374 344 HOH HOH A . B 2 HOH 184 375 349 HOH HOH A . B 2 HOH 185 376 360 HOH HOH A . B 2 HOH 186 377 362 HOH HOH A . B 2 HOH 187 378 363 HOH HOH A . B 2 HOH 188 379 364 HOH HOH A . B 2 HOH 189 380 365 HOH HOH A . B 2 HOH 190 381 368 HOH HOH A . B 2 HOH 191 382 369 HOH HOH A . B 2 HOH 192 383 372 HOH HOH A . B 2 HOH 193 384 398 HOH HOH A . B 2 HOH 194 385 395 HOH HOH A . B 2 HOH 195 386 400 HOH HOH A . B 2 HOH 196 387 401 HOH HOH A . B 2 HOH 197 388 402 HOH HOH A . B 2 HOH 198 389 404 HOH HOH A . B 2 HOH 199 390 405 HOH HOH A . B 2 HOH 200 391 406 HOH HOH A . B 2 HOH 201 392 408 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-02-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 AMoRE phasing . ? 2 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE Author states that this is a polymorph, of all the Na-ASPs cloned and sequenced approxiamtely 50% have a Leu in that site while the others have a Met. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 189 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ALA _pdbx_validate_close_contact.auth_seq_id_2 191 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 368 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 369 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_655 _pdbx_validate_symm_contact.dist 2.11 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 MET _pdbx_validate_rmsd_angle.auth_seq_id_1 18 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 SD _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 MET _pdbx_validate_rmsd_angle.auth_seq_id_2 18 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 MET _pdbx_validate_rmsd_angle.auth_seq_id_3 18 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 115.94 _pdbx_validate_rmsd_angle.angle_target_value 100.20 _pdbx_validate_rmsd_angle.angle_deviation 15.74 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 44 ? ? -158.10 52.51 2 1 ARG A 75 ? ? -154.42 59.08 3 1 PRO A 160 ? ? -40.03 155.93 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLY _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 159 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 160 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -47.15 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id GLY _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 159 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -12.63 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU -1 ? CG ? A GLU 4 CG 2 1 Y 1 A GLU -1 ? CD ? A GLU 4 CD 3 1 Y 1 A GLU -1 ? OE1 ? A GLU 4 OE1 4 1 Y 1 A GLU -1 ? OE2 ? A GLU 4 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA -4 ? A ALA 1 2 1 Y 1 A GLU -3 ? A GLU 2 3 1 Y 1 A ALA -2 ? A ALA 3 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #