HEADER SIGNALING PROTEIN 27-JUL-04 1U5E TITLE CRYSTAL STRUCTURE OF A N-TERMINAL FRAGMENT OF SKAP-HOM CONTAINING BOTH TITLE 2 THE HELICAL DIMERIZATION DOMAIN AND THE PH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SRC-ASSOCIATED ADAPTOR PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT, RESIDUES 12-222; COMPND 5 SYNONYM: SKAP55 HOMOLOGUE; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SCAP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS NOVEL DIMERIZATION DOMAIN, PH DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANG,K.D.SWANSON,B.G.NEEL,M.J.ECK REVDAT 4 23-AUG-23 1U5E 1 REMARK REVDAT 3 20-OCT-21 1U5E 1 SEQADV REVDAT 2 24-FEB-09 1U5E 1 VERSN REVDAT 1 26-JUL-05 1U5E 0 JRNL AUTH Y.TANG,K.D.SWANSON,B.G.NEEL,M.J.ECK JRNL TITL STRUCTURAL BASIS FOR THE DIMERIZATION AND PHOSPHOINOSITIDE JRNL TITL 2 SPECIFICITY OF THE SRC KINASE-ASSOCIATED PHOSPHOPROTEINS JRNL TITL 3 SKAP55 AND SKAP-HOM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 15738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 819 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.050 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 3.200 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15738 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: THE PH DOMAIN OF SKAP-HOM, PDB ENTRY 1U5G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, PH 7.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.10250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.37100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.10250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.37100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 65 REMARK 465 LYS A 66 REMARK 465 GLY A 67 REMARK 465 ASP A 68 REMARK 465 ALA A 69 REMARK 465 GLU A 70 REMARK 465 ASP A 71 REMARK 465 GLY A 72 REMARK 465 ASP A 73 REMARK 465 GLU A 74 REMARK 465 TYR A 75 REMARK 465 ASP A 76 REMARK 465 ASP A 77 REMARK 465 PRO A 78 REMARK 465 PHE A 79 REMARK 465 ALA A 80 REMARK 465 GLY A 81 REMARK 465 PRO A 82 REMARK 465 ALA A 83 REMARK 465 ASP A 84 REMARK 465 THR A 85 REMARK 465 ILE A 86 REMARK 465 SER A 87 REMARK 465 LEU A 88 REMARK 465 ALA A 89 REMARK 465 SER A 90 REMARK 465 GLU A 91 REMARK 465 ARG A 92 REMARK 465 TYR A 93 REMARK 465 ASP A 94 REMARK 465 LYS A 95 REMARK 465 ASP A 96 REMARK 465 ASP A 97 REMARK 465 ASP A 98 REMARK 465 GLY A 99 REMARK 465 PRO A 100 REMARK 465 SER A 101 REMARK 465 ASP A 102 REMARK 465 GLY A 103 REMARK 465 ASN A 104 REMARK 465 GLN A 105 REMARK 465 GLY B 12 REMARK 465 SER B 13 REMARK 465 ASP B 65 REMARK 465 LYS B 66 REMARK 465 GLY B 67 REMARK 465 ASP B 68 REMARK 465 ALA B 69 REMARK 465 GLU B 70 REMARK 465 ASP B 71 REMARK 465 GLY B 72 REMARK 465 ASP B 73 REMARK 465 GLU B 74 REMARK 465 TYR B 75 REMARK 465 ASP B 76 REMARK 465 ASP B 77 REMARK 465 PRO B 78 REMARK 465 PHE B 79 REMARK 465 ALA B 80 REMARK 465 GLY B 81 REMARK 465 PRO B 82 REMARK 465 ALA B 83 REMARK 465 ASP B 84 REMARK 465 THR B 85 REMARK 465 ILE B 86 REMARK 465 SER B 87 REMARK 465 LEU B 88 REMARK 465 ALA B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 ARG B 92 REMARK 465 TYR B 93 REMARK 465 ASP B 94 REMARK 465 LYS B 95 REMARK 465 ASP B 96 REMARK 465 ASP B 97 REMARK 465 ASP B 98 REMARK 465 GLY B 99 REMARK 465 PRO B 100 REMARK 465 SER B 101 REMARK 465 ASP B 102 REMARK 465 GLY B 103 REMARK 465 ASN B 104 REMARK 465 GLN B 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 13 N SER A 13 CA 0.144 REMARK 500 SER A 13 CB SER A 13 OG 0.085 REMARK 500 SER A 13 CA SER A 13 C 0.163 REMARK 500 GLU A 16 CB GLU A 16 CG -0.125 REMARK 500 GLU A 16 CD GLU A 16 OE2 0.135 REMARK 500 ARG A 18 CZ ARG A 18 NH1 -0.091 REMARK 500 ALA A 29 CA ALA A 29 CB -0.180 REMARK 500 GLU A 35 CD GLU A 35 OE1 0.072 REMARK 500 GLU A 35 CD GLU A 35 OE2 -0.069 REMARK 500 LYS A 42 CD LYS A 42 CE 0.191 REMARK 500 SER A 47 CB SER A 47 OG -0.141 REMARK 500 SER A 57 CB SER A 57 OG -0.102 REMARK 500 VAL A 58 CB VAL A 58 CG2 -0.136 REMARK 500 GLN A 61 CG GLN A 61 CD 0.196 REMARK 500 GLU A 62 CD GLU A 62 OE1 0.098 REMARK 500 PHE A 63 CD1 PHE A 63 CE1 -0.132 REMARK 500 ALA A 120 CA ALA A 120 CB -0.154 REMARK 500 ARG A 126 NE ARG A 126 CZ 0.090 REMARK 500 PHE A 135 CG PHE A 135 CD2 -0.108 REMARK 500 PHE A 135 CE1 PHE A 135 CZ -0.169 REMARK 500 GLU A 136 CB GLU A 136 CG 0.163 REMARK 500 GLU A 136 CG GLU A 136 CD 0.233 REMARK 500 GLU A 136 CD GLU A 136 OE2 0.116 REMARK 500 GLN A 138 CG GLN A 138 CD 0.181 REMARK 500 LYS A 139 CD LYS A 139 CE 0.273 REMARK 500 LYS A 139 CE LYS A 139 NZ 0.182 REMARK 500 LYS A 146 CD LYS A 146 CE 0.161 REMARK 500 TYR A 150 CE1 TYR A 150 CZ 0.093 REMARK 500 TYR A 150 CZ TYR A 150 CE2 0.102 REMARK 500 TYR A 150 CE2 TYR A 150 CD2 0.139 REMARK 500 LYS A 161 CE LYS A 161 NZ 0.156 REMARK 500 GLU A 163 C GLU A 163 O -0.137 REMARK 500 VAL A 171 CB VAL A 171 CG1 -0.140 REMARK 500 ASP A 193 CB ASP A 193 CG 0.142 REMARK 500 LYS A 194 CG LYS A 194 CD 0.220 REMARK 500 LYS A 194 CD LYS A 194 CE 0.203 REMARK 500 LYS A 194 CA LYS A 194 C 0.186 REMARK 500 ARG A 195 CG ARG A 195 CD -0.223 REMARK 500 TYR A 197 CE1 TYR A 197 CZ -0.083 REMARK 500 ALA A 201 C ALA A 201 O -0.136 REMARK 500 VAL A 211 C VAL A 211 O -0.114 REMARK 500 PRO B 14 N PRO B 14 CA 0.154 REMARK 500 PRO B 14 CB PRO B 14 CG 0.269 REMARK 500 GLU B 25 CD GLU B 25 OE1 0.071 REMARK 500 ASP B 30 CB ASP B 30 CG 0.141 REMARK 500 LYS B 39 CD LYS B 39 CE 0.158 REMARK 500 SER B 47 CB SER B 47 OG -0.083 REMARK 500 VAL B 58 CB VAL B 58 CG1 -0.249 REMARK 500 TYR B 59 CZ TYR B 59 CE2 0.079 REMARK 500 GLN B 61 CG GLN B 61 CD 0.140 REMARK 500 REMARK 500 THIS ENTRY HAS 65 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 30 CB - CG - OD1 ANGL. DEV. = 10.0 DEGREES REMARK 500 LYS A 42 CD - CE - NZ ANGL. DEV. = 15.9 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 GLU A 136 OE1 - CD - OE2 ANGL. DEV. = -10.0 DEGREES REMARK 500 LYS A 146 CD - CE - NZ ANGL. DEV. = 16.7 DEGREES REMARK 500 LYS A 158 CD - CE - NZ ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG A 178 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 193 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 195 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ASP A 206 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 206 CB - CG - OD2 ANGL. DEV. = 8.5 DEGREES REMARK 500 GLY A 222 CA - C - O ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP B 23 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 30 OD1 - CG - OD2 ANGL. DEV. = -12.4 DEGREES REMARK 500 ASP B 30 CB - CG - OD2 ANGL. DEV. = 12.7 DEGREES REMARK 500 LEU B 60 CB - CG - CD1 ANGL. DEV. = 12.0 DEGREES REMARK 500 ILE B 109 CG1 - CB - CG2 ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG B 126 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 GLU B 136 OE1 - CD - OE2 ANGL. DEV. = 10.1 DEGREES REMARK 500 ASP B 155 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP B 155 CB - CG - OD2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP B 157 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 LYS B 161 CD - CE - NZ ANGL. DEV. = 14.4 DEGREES REMARK 500 ASP B 167 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 MET B 173 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP B 184 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 193 OD1 - CG - OD2 ANGL. DEV. = -13.6 DEGREES REMARK 500 ASP B 193 CB - CG - OD2 ANGL. DEV. = 11.4 DEGREES REMARK 500 ASP B 206 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP B 206 CB - CG - OD2 ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 38 170.07 -55.99 REMARK 500 PHE A 116 58.83 39.05 REMARK 500 LYS A 146 -124.50 53.96 REMARK 500 ASP A 155 0.48 -69.84 REMARK 500 ASP A 180 -166.06 -78.77 REMARK 500 ASP A 193 26.13 -51.64 REMARK 500 LYS A 194 48.35 34.86 REMARK 500 ASP A 220 47.29 -109.33 REMARK 500 LEU A 221 14.68 -144.05 REMARK 500 LYS B 146 -123.15 57.62 REMARK 500 THR B 176 30.03 -98.66 REMARK 500 ASP B 193 0.86 -66.59 REMARK 500 LYS B 194 3.81 86.27 REMARK 500 GLN B 219 -49.56 -134.03 REMARK 500 ASP B 220 72.13 -116.85 REMARK 500 LEU B 221 -56.80 -126.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 12 SER A 13 146.98 REMARK 500 SER A 13 PRO A 14 -133.95 REMARK 500 LEU A 221 GLY A 222 -146.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U5G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PH DOMAIN OF SKAP-HOM REMARK 900 RELATED ID: 1U5F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PH DOMAIN OF SKAP-HOM WITH 8 VECTOR- REMARK 900 DERIVED N-TERMINAL RESIDUES. REMARK 900 RELATED ID: 1U5D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PH DOMAIN OF SKAP55 DBREF 1U5E A 12 222 UNP Q9Z2K4 Q9Z2K4_MOUSE 12 222 DBREF 1U5E B 12 222 UNP Q9Z2K4 Q9Z2K4_MOUSE 12 222 SEQADV 1U5E GLY A 12 UNP Q9Z2K4 PRO 12 ENGINEERED MUTATION SEQADV 1U5E SER A 13 UNP Q9Z2K4 LEU 13 ENGINEERED MUTATION SEQADV 1U5E GLY B 12 UNP Q9Z2K4 PRO 12 ENGINEERED MUTATION SEQADV 1U5E SER B 13 UNP Q9Z2K4 LEU 13 ENGINEERED MUTATION SEQRES 1 A 211 GLY SER PRO GLU GLU ILE ARG ASN LEU LEU ALA ASP VAL SEQRES 2 A 211 GLU THR PHE VAL ALA ASP THR LEU LYS GLY GLU ASN LEU SEQRES 3 A 211 SER LYS LYS ALA LYS GLU LYS ARG GLU SER LEU ILE LYS SEQRES 4 A 211 LYS ILE LYS ASP VAL LYS SER VAL TYR LEU GLN GLU PHE SEQRES 5 A 211 GLN ASP LYS GLY ASP ALA GLU ASP GLY ASP GLU TYR ASP SEQRES 6 A 211 ASP PRO PHE ALA GLY PRO ALA ASP THR ILE SER LEU ALA SEQRES 7 A 211 SER GLU ARG TYR ASP LYS ASP ASP ASP GLY PRO SER ASP SEQRES 8 A 211 GLY ASN GLN PHE PRO PRO ILE ALA ALA GLN ASP LEU PRO SEQRES 9 A 211 PHE VAL ILE LYS ALA GLY TYR LEU GLU LYS ARG ARG LYS SEQRES 10 A 211 ASP HIS SER PHE LEU GLY PHE GLU TRP GLN LYS ARG TRP SEQRES 11 A 211 CYS ALA LEU SER LYS THR VAL PHE TYR TYR TYR GLY SER SEQRES 12 A 211 ASP LYS ASP LYS GLN GLN LYS GLY GLU PHE ALA ILE ASP SEQRES 13 A 211 GLY TYR ASP VAL ARG MET ASN ASN THR LEU ARG LYS ASP SEQRES 14 A 211 GLY LYS LYS ASP CYS CYS PHE GLU ILE CYS ALA PRO ASP SEQRES 15 A 211 LYS ARG ILE TYR GLN PHE THR ALA ALA SER PRO LYS ASP SEQRES 16 A 211 ALA GLU GLU TRP VAL GLN GLN LEU LYS PHE ILE LEU GLN SEQRES 17 A 211 ASP LEU GLY SEQRES 1 B 211 GLY SER PRO GLU GLU ILE ARG ASN LEU LEU ALA ASP VAL SEQRES 2 B 211 GLU THR PHE VAL ALA ASP THR LEU LYS GLY GLU ASN LEU SEQRES 3 B 211 SER LYS LYS ALA LYS GLU LYS ARG GLU SER LEU ILE LYS SEQRES 4 B 211 LYS ILE LYS ASP VAL LYS SER VAL TYR LEU GLN GLU PHE SEQRES 5 B 211 GLN ASP LYS GLY ASP ALA GLU ASP GLY ASP GLU TYR ASP SEQRES 6 B 211 ASP PRO PHE ALA GLY PRO ALA ASP THR ILE SER LEU ALA SEQRES 7 B 211 SER GLU ARG TYR ASP LYS ASP ASP ASP GLY PRO SER ASP SEQRES 8 B 211 GLY ASN GLN PHE PRO PRO ILE ALA ALA GLN ASP LEU PRO SEQRES 9 B 211 PHE VAL ILE LYS ALA GLY TYR LEU GLU LYS ARG ARG LYS SEQRES 10 B 211 ASP HIS SER PHE LEU GLY PHE GLU TRP GLN LYS ARG TRP SEQRES 11 B 211 CYS ALA LEU SER LYS THR VAL PHE TYR TYR TYR GLY SER SEQRES 12 B 211 ASP LYS ASP LYS GLN GLN LYS GLY GLU PHE ALA ILE ASP SEQRES 13 B 211 GLY TYR ASP VAL ARG MET ASN ASN THR LEU ARG LYS ASP SEQRES 14 B 211 GLY LYS LYS ASP CYS CYS PHE GLU ILE CYS ALA PRO ASP SEQRES 15 B 211 LYS ARG ILE TYR GLN PHE THR ALA ALA SER PRO LYS ASP SEQRES 16 B 211 ALA GLU GLU TRP VAL GLN GLN LEU LYS PHE ILE LEU GLN SEQRES 17 B 211 ASP LEU GLY FORMUL 3 HOH *23(H2 O) HELIX 1 1 PRO A 14 ASP A 30 1 17 HELIX 2 2 SER A 38 LYS A 56 1 19 HELIX 3 3 SER A 57 GLN A 64 5 8 HELIX 4 4 ALA A 110 LEU A 114 5 5 HELIX 5 5 LYS A 128 PHE A 132 1 5 HELIX 6 6 ASN A 175 ARG A 178 5 4 HELIX 7 7 LYS A 182 ASP A 184 5 3 HELIX 8 8 SER A 203 ASP A 220 1 18 HELIX 9 9 PRO B 14 ASP B 30 1 17 HELIX 10 10 SER B 38 LYS B 56 1 19 HELIX 11 11 SER B 57 GLN B 64 5 8 HELIX 12 12 ALA B 110 LEU B 114 5 5 HELIX 13 13 LYS B 128 PHE B 132 1 5 HELIX 14 14 LYS B 182 ASP B 184 5 3 HELIX 15 15 SER B 203 LEU B 218 1 16 SHEET 1 A 7 GLY A 162 ALA A 165 0 SHEET 2 A 7 VAL A 148 TYR A 152 -1 N PHE A 149 O PHE A 164 SHEET 3 A 7 GLN A 138 SER A 145 -1 N ALA A 143 O TYR A 150 SHEET 4 A 7 VAL A 117 ARG A 127 -1 N GLY A 121 O CYS A 142 SHEET 5 A 7 ILE A 196 THR A 200 -1 O GLN A 198 N ARG A 126 SHEET 6 A 7 CYS A 186 CYS A 190 -1 N PHE A 187 O PHE A 199 SHEET 7 A 7 ASP A 170 MET A 173 -1 N ASP A 170 O CYS A 190 SHEET 1 B 7 GLY B 162 ALA B 165 0 SHEET 2 B 7 VAL B 148 TYR B 152 -1 N PHE B 149 O PHE B 164 SHEET 3 B 7 GLN B 138 SER B 145 -1 N SER B 145 O VAL B 148 SHEET 4 B 7 GLY B 121 ARG B 127 -1 N GLY B 121 O CYS B 142 SHEET 5 B 7 ILE B 196 THR B 200 -1 O GLN B 198 N ARG B 126 SHEET 6 B 7 CYS B 186 CYS B 190 -1 N PHE B 187 O PHE B 199 SHEET 7 B 7 ASP B 170 MET B 173 -1 N ASP B 170 O CYS B 190 CRYST1 106.205 56.742 89.115 90.00 95.82 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009416 0.000000 0.000960 0.00000 SCALE2 0.000000 0.017624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011280 0.00000