HEADER SIGNALING PROTEIN 27-JUL-04 1U5G TITLE CRYSTAL STRUCTURE OF THE PH DOMAIN OF SKAP-HOM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SRC-ASSOCIATED ADAPTOR PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PH DOMAIN, RESIDUES 101-222; COMPND 5 SYNONYM: SKAP55 HOMOLOGUE; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SCAP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PH DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANG,K.SWANSON,B.G.NEEL,M.J.ECK REVDAT 6 23-AUG-23 1U5G 1 REMARK REVDAT 5 20-OCT-21 1U5G 1 SEQADV REVDAT 4 11-OCT-17 1U5G 1 REMARK REVDAT 3 03-NOV-09 1U5G 1 JRNL REVDAT 2 24-FEB-09 1U5G 1 VERSN REVDAT 1 26-JUL-05 1U5G 0 JRNL AUTH K.D.SWANSON,Y.TANG,D.F.CECCARELLI,F.POY,J.P.SLIWA,B.G.NEEL, JRNL AUTH 2 M.J.ECK JRNL TITL THE SKAP-HOM DIMERIZATION AND PH DOMAINS COMPRISE A JRNL TITL 2 3'-PHOSPHOINOSITIDE-GATED MOLECULAR SWITCH. JRNL REF MOL.CELL V. 32 564 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 19026786 JRNL DOI 10.1016/J.MOLCEL.2008.09.022 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 31477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1691 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3878 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.034 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 2.337 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31477 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: CRYSTAL STRUCTURE OF THE PH DOMAIN OF SKAP-HOM REMARK 200 WITH VECTOR-DERIVED N-TERMINAL LINKER PEPTIDE, PDB ENTRY 1U5F. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, PH 7.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.80650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.88350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.84750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.88350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.80650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.84750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 101 REMARK 465 SER A 102 REMARK 465 GLY A 103 REMARK 465 ASN A 104 REMARK 465 ASP A 220 REMARK 465 LEU A 221 REMARK 465 GLY A 222 REMARK 465 GLY B 101 REMARK 465 SER B 102 REMARK 465 GLY B 103 REMARK 465 ASN B 104 REMARK 465 GLY C 101 REMARK 465 SER C 102 REMARK 465 GLY C 103 REMARK 465 ASN C 104 REMARK 465 GLY D 101 REMARK 465 SER D 102 REMARK 465 GLY D 103 REMARK 465 ASN D 104 REMARK 465 ASP D 220 REMARK 465 LEU D 221 REMARK 465 GLY D 222 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 115 CD PRO B 115 N 0.124 REMARK 500 ARG B 127 CD ARG B 127 NE -0.130 REMARK 500 CYS B 142 CA CYS B 142 CB -0.079 REMARK 500 PHE B 164 CE1 PHE B 164 CZ -0.121 REMARK 500 TYR B 169 CG TYR B 169 CD1 -0.087 REMARK 500 PHE B 199 CE2 PHE B 199 CD2 -0.162 REMARK 500 PHE B 216 CE1 PHE B 216 CZ -0.139 REMARK 500 ARG C 127 CD ARG C 127 NE -0.136 REMARK 500 TRP C 137 CE3 TRP C 137 CZ3 -0.118 REMARK 500 TYR C 151 CZ TYR C 151 CE2 0.087 REMARK 500 TYR C 152 CG TYR C 152 CD1 0.104 REMARK 500 LYS C 161 CD LYS C 161 CE 0.163 REMARK 500 ARG C 195 CG ARG C 195 CD -0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 180 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 193 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 PRO B 115 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG B 126 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 126 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 127 NE - CZ - NH1 ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG B 127 NE - CZ - NH2 ANGL. DEV. = -9.1 DEGREES REMARK 500 ASP B 157 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 LYS B 158 CD - CE - NZ ANGL. DEV. = 14.3 DEGREES REMARK 500 ASP B 167 CB - CG - OD2 ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP B 170 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 178 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG C 127 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG C 127 NE - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP C 170 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG C 178 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP C 193 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP D 155 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG D 178 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP D 193 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP D 206 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 116 76.37 30.25 REMARK 500 ASP A 129 -154.19 -129.29 REMARK 500 LYS A 146 -101.17 59.12 REMARK 500 ASP A 167 112.31 -30.92 REMARK 500 LYS B 146 -108.92 55.29 REMARK 500 LYS C 146 -104.75 44.47 REMARK 500 PRO D 107 138.04 -39.11 REMARK 500 ASP D 129 -159.54 -95.33 REMARK 500 SER D 131 36.82 -86.36 REMARK 500 LYS D 146 -107.22 65.27 REMARK 500 ILE D 166 33.77 -96.25 REMARK 500 ASN D 174 107.59 -160.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 105 PHE A 106 -145.13 REMARK 500 PHE D 132 LEU D 133 126.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN C 105 13.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U5E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A N-TERMINAL FRAGMENT OF SKAP-HOM CONTAINING REMARK 900 BOTH THE HELICAL DIMERIZATION DOMAIN AND THE PH DOMAIN REMARK 900 RELATED ID: 1U5F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PH DOMAIN OF SKAP-HOM WITH 8 VECTOR- REMARK 900 DERIVED N-TERMINAL RESIDUES REMARK 900 RELATED ID: 1U5D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PH DOMAIN OF SKAP55 DBREF 1U5G A 101 222 UNP Q8BK74 Q8BK74_MOUSE 101 222 DBREF 1U5G B 101 222 UNP Q8BK74 Q8BK74_MOUSE 101 222 DBREF 1U5G C 101 222 UNP Q8BK74 Q8BK74_MOUSE 101 222 DBREF 1U5G D 101 222 UNP Q8BK74 Q8BK74_MOUSE 101 222 SEQADV 1U5G GLY A 101 UNP Q8BK74 SER 101 ENGINEERED MUTATION SEQADV 1U5G SER A 102 UNP Q8BK74 ASP 102 ENGINEERED MUTATION SEQADV 1U5G GLY B 101 UNP Q8BK74 SER 101 ENGINEERED MUTATION SEQADV 1U5G SER B 102 UNP Q8BK74 ASP 102 ENGINEERED MUTATION SEQADV 1U5G GLY C 101 UNP Q8BK74 SER 101 ENGINEERED MUTATION SEQADV 1U5G SER C 102 UNP Q8BK74 ASP 102 ENGINEERED MUTATION SEQADV 1U5G GLY D 101 UNP Q8BK74 SER 101 ENGINEERED MUTATION SEQADV 1U5G SER D 102 UNP Q8BK74 ASP 102 ENGINEERED MUTATION SEQRES 1 A 122 GLY SER GLY ASN GLN PHE PRO PRO ILE ALA ALA GLN ASP SEQRES 2 A 122 LEU PRO PHE VAL ILE LYS ALA GLY TYR LEU GLU LYS ARG SEQRES 3 A 122 ARG LYS ASP HIS SER PHE LEU GLY PHE GLU TRP GLN LYS SEQRES 4 A 122 ARG TRP CYS ALA LEU SER LYS THR VAL PHE TYR TYR TYR SEQRES 5 A 122 GLY SER ASP LYS ASP LYS GLN GLN LYS GLY GLU PHE ALA SEQRES 6 A 122 ILE ASP GLY TYR ASP VAL ARG MET ASN ASN THR LEU ARG SEQRES 7 A 122 LYS ASP GLY LYS LYS ASP CYS CYS PHE GLU ILE CYS ALA SEQRES 8 A 122 PRO ASP LYS ARG ILE TYR GLN PHE THR ALA ALA SER PRO SEQRES 9 A 122 LYS ASP ALA GLU GLU TRP VAL GLN GLN LEU LYS PHE ILE SEQRES 10 A 122 LEU GLN ASP LEU GLY SEQRES 1 B 122 GLY SER GLY ASN GLN PHE PRO PRO ILE ALA ALA GLN ASP SEQRES 2 B 122 LEU PRO PHE VAL ILE LYS ALA GLY TYR LEU GLU LYS ARG SEQRES 3 B 122 ARG LYS ASP HIS SER PHE LEU GLY PHE GLU TRP GLN LYS SEQRES 4 B 122 ARG TRP CYS ALA LEU SER LYS THR VAL PHE TYR TYR TYR SEQRES 5 B 122 GLY SER ASP LYS ASP LYS GLN GLN LYS GLY GLU PHE ALA SEQRES 6 B 122 ILE ASP GLY TYR ASP VAL ARG MET ASN ASN THR LEU ARG SEQRES 7 B 122 LYS ASP GLY LYS LYS ASP CYS CYS PHE GLU ILE CYS ALA SEQRES 8 B 122 PRO ASP LYS ARG ILE TYR GLN PHE THR ALA ALA SER PRO SEQRES 9 B 122 LYS ASP ALA GLU GLU TRP VAL GLN GLN LEU LYS PHE ILE SEQRES 10 B 122 LEU GLN ASP LEU GLY SEQRES 1 C 122 GLY SER GLY ASN GLN PHE PRO PRO ILE ALA ALA GLN ASP SEQRES 2 C 122 LEU PRO PHE VAL ILE LYS ALA GLY TYR LEU GLU LYS ARG SEQRES 3 C 122 ARG LYS ASP HIS SER PHE LEU GLY PHE GLU TRP GLN LYS SEQRES 4 C 122 ARG TRP CYS ALA LEU SER LYS THR VAL PHE TYR TYR TYR SEQRES 5 C 122 GLY SER ASP LYS ASP LYS GLN GLN LYS GLY GLU PHE ALA SEQRES 6 C 122 ILE ASP GLY TYR ASP VAL ARG MET ASN ASN THR LEU ARG SEQRES 7 C 122 LYS ASP GLY LYS LYS ASP CYS CYS PHE GLU ILE CYS ALA SEQRES 8 C 122 PRO ASP LYS ARG ILE TYR GLN PHE THR ALA ALA SER PRO SEQRES 9 C 122 LYS ASP ALA GLU GLU TRP VAL GLN GLN LEU LYS PHE ILE SEQRES 10 C 122 LEU GLN ASP LEU GLY SEQRES 1 D 122 GLY SER GLY ASN GLN PHE PRO PRO ILE ALA ALA GLN ASP SEQRES 2 D 122 LEU PRO PHE VAL ILE LYS ALA GLY TYR LEU GLU LYS ARG SEQRES 3 D 122 ARG LYS ASP HIS SER PHE LEU GLY PHE GLU TRP GLN LYS SEQRES 4 D 122 ARG TRP CYS ALA LEU SER LYS THR VAL PHE TYR TYR TYR SEQRES 5 D 122 GLY SER ASP LYS ASP LYS GLN GLN LYS GLY GLU PHE ALA SEQRES 6 D 122 ILE ASP GLY TYR ASP VAL ARG MET ASN ASN THR LEU ARG SEQRES 7 D 122 LYS ASP GLY LYS LYS ASP CYS CYS PHE GLU ILE CYS ALA SEQRES 8 D 122 PRO ASP LYS ARG ILE TYR GLN PHE THR ALA ALA SER PRO SEQRES 9 D 122 LYS ASP ALA GLU GLU TRP VAL GLN GLN LEU LYS PHE ILE SEQRES 10 D 122 LEU GLN ASP LEU GLY FORMUL 5 HOH *213(H2 O) HELIX 1 1 ASP A 180 ASP A 184 5 5 HELIX 2 2 SER A 203 GLN A 219 1 17 HELIX 3 3 ALA B 110 LEU B 114 5 5 HELIX 4 4 ASP B 180 ASP B 184 5 5 HELIX 5 5 SER B 203 GLY B 222 1 20 HELIX 6 6 ALA C 110 LEU C 114 5 5 HELIX 7 7 ASP C 180 ASP C 184 5 5 HELIX 8 8 SER C 203 GLY C 222 1 20 HELIX 9 9 ALA D 110 LEU D 114 5 5 HELIX 10 10 LYS D 182 ASP D 184 5 3 HELIX 11 11 SER D 203 GLN D 219 1 17 SHEET 1 A 7 GLY A 162 ALA A 165 0 SHEET 2 A 7 VAL A 148 TYR A 152 -1 N PHE A 149 O PHE A 164 SHEET 3 A 7 TRP A 137 SER A 145 -1 N TRP A 141 O TYR A 152 SHEET 4 A 7 GLY A 121 ARG A 126 -1 N GLY A 121 O CYS A 142 SHEET 5 A 7 TYR A 197 THR A 200 -1 O GLN A 198 N ARG A 126 SHEET 6 A 7 CYS A 186 CYS A 190 -1 N ILE A 189 O TYR A 197 SHEET 7 A 7 ASP A 170 MET A 173 -1 N ARG A 172 O GLU A 188 SHEET 1 B 7 GLY B 162 ALA B 165 0 SHEET 2 B 7 VAL B 148 TYR B 152 -1 N PHE B 149 O PHE B 164 SHEET 3 B 7 TRP B 137 SER B 145 -1 N ALA B 143 O TYR B 150 SHEET 4 B 7 VAL B 117 ARG B 126 -1 N GLY B 121 O CYS B 142 SHEET 5 B 7 TYR B 197 THR B 200 -1 O THR B 200 N GLU B 124 SHEET 6 B 7 CYS B 186 CYS B 190 -1 N PHE B 187 O PHE B 199 SHEET 7 B 7 ASP B 170 MET B 173 -1 N ASP B 170 O CYS B 190 SHEET 1 C 7 GLY C 162 ALA C 165 0 SHEET 2 C 7 VAL C 148 TYR C 152 -1 N PHE C 149 O PHE C 164 SHEET 3 C 7 TRP C 137 SER C 145 -1 N ALA C 143 O TYR C 150 SHEET 4 C 7 VAL C 117 ARG C 126 -1 N GLY C 121 O CYS C 142 SHEET 5 C 7 TYR C 197 THR C 200 -1 O THR C 200 N GLU C 124 SHEET 6 C 7 CYS C 186 CYS C 190 -1 N PHE C 187 O PHE C 199 SHEET 7 C 7 ASP C 170 MET C 173 -1 N ASP C 170 O CYS C 190 SHEET 1 D 7 GLY D 162 ALA D 165 0 SHEET 2 D 7 VAL D 148 TYR D 152 -1 N PHE D 149 O PHE D 164 SHEET 3 D 7 TRP D 137 SER D 145 -1 N TRP D 141 O TYR D 152 SHEET 4 D 7 VAL D 117 ARG D 126 -1 N LYS D 119 O LEU D 144 SHEET 5 D 7 TYR D 197 THR D 200 -1 O GLN D 198 N ARG D 126 SHEET 6 D 7 CYS D 186 CYS D 190 -1 N ILE D 189 O TYR D 197 SHEET 7 D 7 ASP D 170 MET D 173 -1 N ASP D 170 O CYS D 190 CRYST1 59.613 65.695 143.767 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016775 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006956 0.00000