HEADER TRANSFERASE 27-JUL-04 1U5J TITLE PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT, MET186ILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCARBOXYLASE 5S SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.3.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROPIONIBACTERIUM FREUDENREICHII SUBSP. SOURCE 3 SHERMANII; SOURCE 4 ORGANISM_TAXID: 1752; SOURCE 5 STRAIN: SUBSP. SHERMANII; SOURCE 6 GENE: 5S; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3)PLACI; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETBLUE-2 KEYWDS TIM-BARREL, CARBAMYLATED LYSINE, TRANSCARBOXYLASE, COBALT, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.R.HALL,R.ZHENG,L.ANTONY,M.PUSZTAI-CAREY,P.R.CAREY,V.C.YEE REVDAT 7 15-NOV-23 1U5J 1 REMARK REVDAT 6 23-AUG-23 1U5J 1 REMARK REVDAT 5 20-OCT-21 1U5J 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1U5J 1 REMARK REVDAT 3 24-FEB-09 1U5J 1 VERSN REVDAT 2 28-SEP-04 1U5J 1 JRNL REVDAT 1 07-SEP-04 1U5J 0 JRNL AUTH P.R.HALL,R.ZHENG,L.ANTONY,M.PUSZTAI-CAREY,P.R.CAREY,V.C.YEE JRNL TITL TRANSCARBOXYLASE 5S STRUCTURES: ASSEMBLY AND CATALYTIC JRNL TITL 2 MECHANISM OF A MULTIENZYME COMPLEX SUBUNIT. JRNL REF EMBO J. V. 23 3621 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15329673 JRNL DOI 10.1038/SJ.EMBOJ.7600373 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.R.HALL,R.ZHENG,M.PUSZTAI-CAREY,F.VAN DEN AKKER,P.R.CAREY, REMARK 1 AUTH 2 V.C.YEE REMARK 1 TITL EXPRESSION AND CRYSTALLIZATION OF SEVERAL FORMS OF THE REMARK 1 TITL 2 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 521 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 14993680 REMARK 1 DOI 10.1107/S0907444903028294 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2449175.220 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 13944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 697 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2151 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 125 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -1.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.190 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.400 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.040 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.290 ; 3.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 26.95 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP2.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PROTEUM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS (BRUKER) REMARK 200 DATA SCALING SOFTWARE : BRUKER PROSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14015 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1RQB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, TRIS, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.40600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.40600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.84000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.52100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.84000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.52100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.40600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.84000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.52100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.40600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.84000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.52100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 191.36000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -39.40600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ALA A -9 REMARK 465 ILE A -8 REMARK 465 SER A -7 REMARK 465 ARG A -6 REMARK 465 GLU A -5 REMARK 465 LEU A -4 REMARK 465 VAL A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 ASN A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 475 REMARK 465 GLY A 476 REMARK 465 ASP A 477 REMARK 465 GLU A 478 REMARK 465 LYS A 479 REMARK 465 SER A 480 REMARK 465 LEU A 481 REMARK 465 ALA A 482 REMARK 465 VAL A 483 REMARK 465 ALA A 484 REMARK 465 GLY A 485 REMARK 465 PRO A 486 REMARK 465 VAL A 487 REMARK 465 THR A 488 REMARK 465 TYR A 489 REMARK 465 ASN A 490 REMARK 465 VAL A 491 REMARK 465 ASN A 492 REMARK 465 VAL A 493 REMARK 465 GLY A 494 REMARK 465 GLY A 495 REMARK 465 THR A 496 REMARK 465 VAL A 497 REMARK 465 ARG A 498 REMARK 465 GLU A 499 REMARK 465 VAL A 500 REMARK 465 THR A 501 REMARK 465 VAL A 502 REMARK 465 GLN A 503 REMARK 465 GLN A 504 REMARK 465 ALA A 505 REMARK 465 THR A 506 REMARK 465 ARG A 507 REMARK 465 ALA A 508 REMARK 465 SER A 509 REMARK 465 GLN A 510 REMARK 465 PRO A 511 REMARK 465 GLU A 512 REMARK 465 LEU A 513 REMARK 465 ALA A 514 REMARK 465 PRO A 515 REMARK 465 GLU A 516 REMARK 465 ASP A 517 REMARK 465 PRO A 518 REMARK 465 GLU A 519 REMARK 465 ASP A 520 REMARK 465 LEU A 521 REMARK 465 GLU A 522 REMARK 465 HIS A 523 REMARK 465 HIS A 524 REMARK 465 HIS A 525 REMARK 465 HIS A 526 REMARK 465 HIS A 527 REMARK 465 HIS A 528 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 22 -76.89 -151.16 REMARK 500 THR A 31 14.78 59.33 REMARK 500 LEU A 97 -110.95 48.97 REMARK 500 ASN A 130 31.05 70.16 REMARK 500 ALA A 145 3.52 -66.25 REMARK 500 PRO A 192 -71.55 -49.79 REMARK 500 MET A 245 50.91 -140.11 REMARK 500 LEU A 247 -165.85 64.14 REMARK 500 PRO A 249 6.14 -68.38 REMARK 500 ASN A 269 84.64 -60.69 REMARK 500 LYS A 291 0.11 -67.86 REMARK 500 ASP A 299 99.06 -160.02 REMARK 500 GLU A 325 15.47 -60.47 REMARK 500 PHE A 344 65.76 60.62 REMARK 500 GLU A 367 101.68 -52.94 REMARK 500 ASP A 391 101.01 -47.28 REMARK 500 PRO A 411 -9.26 -51.44 REMARK 500 LEU A 414 36.16 -95.08 REMARK 500 TRP A 419 -73.54 -54.01 REMARK 500 HIS A 461 -166.89 -123.53 REMARK 500 ALA A 472 -5.14 -54.64 REMARK 500 GLU A 473 -68.50 -107.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 529 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 OD1 REMARK 620 2 KCX A 184 OQ2 126.8 REMARK 620 3 KCX A 184 OQ1 98.5 50.7 REMARK 620 4 HIS A 215 NE2 92.6 121.3 86.4 REMARK 620 5 HIS A 217 NE2 88.0 125.6 173.4 92.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 529 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RQB RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT REMARK 900 RELATED ID: 1RQE RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT BOUND TO REMARK 900 OXALOACETATE REMARK 900 RELATED ID: 1RQH RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT BOUND TO REMARK 900 PYRUVATE REMARK 900 RELATED ID: 1RR2 RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT BOUND TO 2- REMARK 900 KETOBUTYRATE REMARK 900 RELATED ID: 1SH3 RELATED DB: PDB REMARK 900 PROPIONIBACTERIUM SHERMANII TRANSCARBOXYLASE 5S SUBUNIT, ALA59THR DBREF 1U5J A 2 505 UNP Q70AC7 5S_PROFR 2 505 SEQADV 1U5J MET A -10 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J ALA A -9 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J ILE A -8 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J SER A -7 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J ARG A -6 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J GLU A -5 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J LEU A -4 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J VAL A -3 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J ASP A -2 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J PRO A -1 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J ASN A 0 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J SER A 1 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J KCX A 184 UNP Q70AC7 LYS 184 MODIFIED RESIDUE SEQADV 1U5J ILE A 186 UNP Q70AC7 MET 186 ENGINEERED MUTATION SEQADV 1U5J THR A 506 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J ARG A 507 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J ALA A 508 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J SER A 509 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J GLN A 510 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J PRO A 511 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J GLU A 512 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J LEU A 513 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J ALA A 514 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J PRO A 515 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J GLU A 516 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J ASP A 517 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J PRO A 518 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J GLU A 519 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J ASP A 520 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J LEU A 521 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J GLU A 522 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J HIS A 523 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J HIS A 524 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J HIS A 525 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J HIS A 526 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J HIS A 527 UNP Q70AC7 CLONING ARTIFACT SEQADV 1U5J HIS A 528 UNP Q70AC7 CLONING ARTIFACT SEQRES 1 A 539 MET ALA ILE SER ARG GLU LEU VAL ASP PRO ASN SER SER SEQRES 2 A 539 PRO ARG GLU ILE GLU VAL SER GLU PRO ARG GLU VAL GLY SEQRES 3 A 539 ILE THR GLU LEU VAL LEU ARG ASP ALA HIS GLN SER LEU SEQRES 4 A 539 MET ALA THR ARG MET ALA MET GLU ASP MET VAL GLY ALA SEQRES 5 A 539 CYS ALA ASP ILE ASP ALA ALA GLY TYR TRP SER VAL GLU SEQRES 6 A 539 CYS TRP GLY GLY ALA THR TYR ASP SER CYS ILE ARG PHE SEQRES 7 A 539 LEU ASN GLU ASP PRO TRP GLU ARG LEU ARG THR PHE ARG SEQRES 8 A 539 LYS LEU MET PRO ASN SER ARG LEU GLN MET LEU LEU ARG SEQRES 9 A 539 GLY GLN ASN LEU LEU GLY TYR ARG HIS TYR ASN ASP GLU SEQRES 10 A 539 VAL VAL ASP ARG PHE VAL ASP LYS SER ALA GLU ASN GLY SEQRES 11 A 539 MET ASP VAL PHE ARG VAL PHE ASP ALA MET ASN ASP PRO SEQRES 12 A 539 ARG ASN MET ALA HIS ALA MET ALA ALA VAL LYS LYS ALA SEQRES 13 A 539 GLY LYS HIS ALA GLN GLY THR ILE CYS TYR THR ILE SER SEQRES 14 A 539 PRO VAL HIS THR VAL GLU GLY TYR VAL LYS LEU ALA GLY SEQRES 15 A 539 GLN LEU LEU ASP MET GLY ALA ASP SER ILE ALA LEU KCX SEQRES 16 A 539 ASP ILE ALA ALA LEU LEU LYS PRO GLN PRO ALA TYR ASP SEQRES 17 A 539 ILE ILE LYS ALA ILE LYS ASP THR TYR GLY GLN LYS THR SEQRES 18 A 539 GLN ILE ASN LEU HIS CYS HIS SER THR THR GLY VAL THR SEQRES 19 A 539 GLU VAL SER LEU MET LYS ALA ILE GLU ALA GLY VAL ASP SEQRES 20 A 539 VAL VAL ASP THR ALA ILE SER SER MET SER LEU GLY PRO SEQRES 21 A 539 GLY HIS ASN PRO THR GLU SER VAL ALA GLU MET LEU GLU SEQRES 22 A 539 GLY THR GLY TYR THR THR ASN LEU ASP TYR ASP ARG LEU SEQRES 23 A 539 HIS LYS ILE ARG ASP HIS PHE LYS ALA ILE ARG PRO LYS SEQRES 24 A 539 TYR LYS LYS PHE GLU SER LYS THR LEU VAL ASP THR SER SEQRES 25 A 539 ILE PHE LYS SER GLN ILE PRO GLY GLY MET LEU SER ASN SEQRES 26 A 539 MET GLU SER GLN LEU ARG ALA GLN GLY ALA GLU ASP LYS SEQRES 27 A 539 MET ASP GLU VAL MET ALA GLU VAL PRO ARG VAL ARG LYS SEQRES 28 A 539 ALA ALA GLY PHE PRO PRO LEU VAL THR PRO SER SER GLN SEQRES 29 A 539 ILE VAL GLY THR GLN ALA VAL PHE ASN VAL MET MET GLY SEQRES 30 A 539 GLU TYR LYS ARG MET THR GLY GLU PHE ALA ASP ILE MET SEQRES 31 A 539 LEU GLY TYR TYR GLY ALA SER PRO ALA ASP ARG ASP PRO SEQRES 32 A 539 LYS VAL VAL LYS LEU ALA GLU GLU GLN SER GLY LYS LYS SEQRES 33 A 539 PRO ILE THR GLN ARG PRO ALA ASP LEU LEU PRO PRO GLU SEQRES 34 A 539 TRP GLU LYS GLN SER LYS GLU ALA ALA THR LEU LYS GLY SEQRES 35 A 539 PHE ASN GLY THR ASP GLU ASP VAL LEU THR TYR ALA LEU SEQRES 36 A 539 PHE PRO GLN VAL ALA PRO VAL PHE PHE GLU HIS ARG ALA SEQRES 37 A 539 GLU GLY PRO HIS SER VAL ALA LEU THR ASP ALA GLN LEU SEQRES 38 A 539 LYS ALA GLU ALA GLU GLY ASP GLU LYS SER LEU ALA VAL SEQRES 39 A 539 ALA GLY PRO VAL THR TYR ASN VAL ASN VAL GLY GLY THR SEQRES 40 A 539 VAL ARG GLU VAL THR VAL GLN GLN ALA THR ARG ALA SER SEQRES 41 A 539 GLN PRO GLU LEU ALA PRO GLU ASP PRO GLU ASP LEU GLU SEQRES 42 A 539 HIS HIS HIS HIS HIS HIS MODRES 1U5J KCX A 184 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 184 12 HET CO A 529 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CO COBALT (II) ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 CO CO 2+ FORMUL 3 HOH *31(H2 O) HELIX 1 1 ARG A 22 MET A 29 1 8 HELIX 2 2 MET A 35 GLY A 40 1 6 HELIX 3 3 ALA A 41 GLY A 49 1 9 HELIX 4 4 ALA A 59 PHE A 67 1 9 HELIX 5 5 ASP A 71 MET A 83 1 13 HELIX 6 6 ARG A 93 LEU A 97 5 5 HELIX 7 7 ASN A 104 ASN A 118 1 15 HELIX 8 8 ASP A 131 ALA A 145 1 15 HELIX 9 9 THR A 162 MET A 176 1 15 HELIX 10 10 LYS A 191 GLY A 207 1 17 HELIX 11 11 VAL A 222 ALA A 233 1 12 HELIX 12 12 ILE A 242 SER A 246 5 5 HELIX 13 13 PRO A 253 LEU A 261 1 9 HELIX 14 14 ASP A 271 ARG A 286 1 16 HELIX 15 15 PRO A 287 GLU A 293 5 7 HELIX 16 16 SER A 301 GLN A 306 1 6 HELIX 17 17 PRO A 308 ALA A 321 1 14 HELIX 18 18 LYS A 327 ALA A 342 1 16 HELIX 19 19 PRO A 350 GLY A 366 1 17 HELIX 20 20 THR A 372 LEU A 380 1 9 HELIX 21 21 ASP A 391 SER A 402 1 12 HELIX 22 22 GLU A 418 ALA A 427 1 10 HELIX 23 23 THR A 435 PHE A 445 1 11 HELIX 24 24 VAL A 448 ARG A 456 1 9 HELIX 25 25 ALA A 457 GLY A 459 5 3 HELIX 26 26 THR A 466 ALA A 474 1 9 SHEET 1 A 2 ARG A 12 GLU A 13 0 SHEET 2 A 2 TYR A 266 THR A 267 1 O THR A 267 N ARG A 12 SHEET 1 B 9 GLY A 15 GLU A 18 0 SHEET 2 B 9 SER A 52 GLY A 57 1 O GLU A 54 N GLU A 18 SHEET 3 B 9 LEU A 88 LEU A 92 1 O GLN A 89 N VAL A 53 SHEET 4 B 9 VAL A 122 VAL A 125 1 O VAL A 122 N LEU A 88 SHEET 5 B 9 HIS A 148 CYS A 154 1 O HIS A 148 N PHE A 123 SHEET 6 B 9 SER A 180 ASP A 185 1 O ALA A 182 N GLY A 151 SHEET 7 B 9 ILE A 212 CYS A 216 1 O HIS A 215 N ASP A 185 SHEET 8 B 9 VAL A 237 THR A 240 1 O VAL A 237 N LEU A 214 SHEET 9 B 9 GLY A 15 GLU A 18 1 N THR A 17 O THR A 240 LINK C LEU A 183 N KCX A 184 1555 1555 1.33 LINK C KCX A 184 N ASP A 185 1555 1555 1.33 LINK OD1 ASP A 23 CO CO A 529 1555 1555 2.00 LINK OQ2 KCX A 184 CO CO A 529 1555 1555 1.48 LINK OQ1 KCX A 184 CO CO A 529 1555 1555 2.70 LINK NE2 HIS A 215 CO CO A 529 1555 1555 2.05 LINK NE2 HIS A 217 CO CO A 529 1555 1555 2.19 CISPEP 1 THR A 349 PRO A 350 0 0.07 SITE 1 AC1 5 ASP A 23 KCX A 184 HIS A 215 HIS A 217 SITE 2 AC1 5 HOH A 557 CRYST1 95.680 147.042 78.812 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010452 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012688 0.00000