data_1U62 # _entry.id 1U62 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1U62 pdb_00001u62 10.2210/pdb1u62/pdb RCSB RCSB023290 ? ? WWPDB D_1000023290 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-22 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-06-24 5 'Structure model' 2 1 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Source and taxonomy' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' entity_name_com 4 4 'Structure model' pdbx_entity_src_syn 5 4 'Structure model' pdbx_nmr_software 6 4 'Structure model' pdbx_struct_assembly 7 4 'Structure model' pdbx_struct_assembly_prop 8 4 'Structure model' pdbx_struct_oper_list 9 4 'Structure model' struct 10 4 'Structure model' struct_conn 11 4 'Structure model' struct_ref 12 4 'Structure model' struct_ref_seq 13 4 'Structure model' struct_ref_seq_dif 14 5 'Structure model' chem_comp_atom 15 5 'Structure model' chem_comp_bond 16 5 'Structure model' database_2 17 5 'Structure model' pdbx_entry_details 18 5 'Structure model' pdbx_modification_feature 19 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.formula' 2 4 'Structure model' '_chem_comp.formula_weight' 3 4 'Structure model' '_chem_comp.id' 4 4 'Structure model' '_chem_comp.mon_nstd_flag' 5 4 'Structure model' '_chem_comp.name' 6 4 'Structure model' '_chem_comp.type' 7 4 'Structure model' '_entity.pdbx_description' 8 4 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 9 4 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 10 4 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 11 4 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 12 4 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 13 4 'Structure model' '_pdbx_nmr_software.name' 14 4 'Structure model' '_struct.pdbx_descriptor' 15 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 16 5 'Structure model' '_database_2.pdbx_DOI' 17 5 'Structure model' '_database_2.pdbx_database_accession' 18 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1U62 _pdbx_database_status.recvd_initial_deposition_date 2004-07-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Japelj, B.' 1 'Pristovsek, P.' 2 'Majerle, A.' 3 'Jerala, R.' 4 # _citation.id primary _citation.title 'Structural Origin of Endotoxin Neutralization and Antimicrobial Activity of a Lactoferrin-based Peptide' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 16955 _citation.page_last 16961 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15687491 _citation.pdbx_database_id_DOI 10.1074/jbc.M500266200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Japelj, B.' 1 ? primary 'Pristovsek, P.' 2 ? primary 'Majerle, A.' 3 ? primary 'Jerala, R.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'lactoferrin-based peptide' _entity.formula_weight 1532.817 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment LF11 _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Lactoferrin,Growth-inhibiting protein 12,Talalactoferrin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'FQWQRNIRKVR(NH2)' _entity_poly.pdbx_seq_one_letter_code_can FQWQRNIRKVRX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 GLN n 1 3 TRP n 1 4 GLN n 1 5 ARG n 1 6 ASN n 1 7 ILE n 1 8 ARG n 1 9 LYS n 1 10 VAL n 1 11 ARG n 1 12 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'Human lactoferrin-based peptide FQWQRNIRKVR' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 1 1 PHE PHE A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 NH2 12 12 12 NH2 NH2 A . n # _exptl.entry_id 1U62 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1U62 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1U62 _struct.title 'NMR structure analysis of the lactoferrin-based peptide FQWQRNIRKVR in complex with lipopolysaccharide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1U62 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'human lactoferricin, peptide-lipopolysaccharide complex, tranferred NOE, TRANSPORT PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRFL_HUMAN _struct_ref.pdbx_db_accession P02788 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code FQWQRNMRKVR _struct_ref.pdbx_align_begin 39 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1U62 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 11 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02788 _struct_ref_seq.db_align_beg 39 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 49 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 11 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1U62 ILE A 7 ? UNP P02788 MET 45 conflict 7 1 1 1U62 NH2 A 12 ? UNP P02788 ? ? 'expression tag' 12 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 120 ? 1 MORE 1 ? 1 'SSA (A^2)' 1660 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 11 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id NH2 _struct_conn.ptnr2_label_seq_id 12 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 11 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NH2 _struct_conn.ptnr2_auth_seq_id 12 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.325 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id NH2 _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 12 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id ARG _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 11 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id NH2 _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 12 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id ARG _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 11 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id ARG _pdbx_modification_feature.ref_pcm_id 8 _pdbx_modification_feature.ref_comp_id NH2 _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Terminal amidation' # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NH2 _struct_site.pdbx_auth_seq_id 12 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE NH2 A 12' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 VAL A 10 ? VAL A 10 . ? 1_555 ? 2 AC1 2 ARG A 11 ? ARG A 11 . ? 1_555 ? # _pdbx_entry_details.entry_id 1U62 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 6 ? ? -48.97 91.53 2 1 ARG A 8 ? ? -78.59 -73.15 3 2 ASN A 6 ? ? -46.22 92.56 4 2 ARG A 8 ? ? -77.19 -152.70 5 3 ASN A 6 ? ? -39.70 92.82 6 4 ASN A 6 ? ? -45.33 92.90 7 4 ARG A 8 ? ? -74.91 -163.77 8 4 LYS A 9 ? ? -49.79 171.53 9 5 TRP A 3 ? ? -59.70 87.08 10 5 GLN A 4 ? ? -37.40 -34.25 11 5 ASN A 6 ? ? -65.05 72.52 12 6 GLN A 2 ? ? -63.75 97.04 13 6 GLN A 4 ? ? -56.43 -70.93 14 6 ASN A 6 ? ? -64.12 81.88 15 6 ARG A 8 ? ? -60.19 82.17 16 6 LYS A 9 ? ? 36.41 56.73 17 7 GLN A 2 ? ? -65.13 95.81 18 7 GLN A 4 ? ? -38.76 -79.01 19 7 ASN A 6 ? ? -55.50 87.87 20 7 ARG A 8 ? ? -58.76 -152.23 21 8 ASN A 6 ? ? -64.83 72.71 22 8 ARG A 8 ? ? -158.00 55.37 23 9 ASN A 6 ? ? -66.28 73.25 24 10 ASN A 6 ? ? -64.98 73.68 25 10 ARG A 8 ? ? 35.42 -152.30 26 11 ASN A 6 ? ? -52.63 90.06 27 11 ARG A 8 ? ? 37.79 36.32 28 12 ASN A 6 ? ? -55.44 89.15 29 12 ARG A 8 ? ? -53.31 -170.10 # _pdbx_nmr_ensemble.entry_id 1U62 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 12 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1U62 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2mM lacfotefficin; 20mM sodium phosphate buffer (pH=5.5); 95% H2O, 5% D2O' _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 5.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type '2D NOESY' # _pdbx_nmr_refine.entry_id 1U62 _pdbx_nmr_refine.method 'simulated annealing in torsion angle space; energy minimization in a true force field' _pdbx_nmr_refine.details 'the structures are based on a total of 109 meaningful NOE distance restraints' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal DYANA 1.5 'structure solution' 'Guenthert et al.' 1 Discover 97 refinement 'Accelrys Inc.' 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASN N N N N 28 ASN CA C N S 29 ASN C C N N 30 ASN O O N N 31 ASN CB C N N 32 ASN CG C N N 33 ASN OD1 O N N 34 ASN ND2 N N N 35 ASN OXT O N N 36 ASN H H N N 37 ASN H2 H N N 38 ASN HA H N N 39 ASN HB2 H N N 40 ASN HB3 H N N 41 ASN HD21 H N N 42 ASN HD22 H N N 43 ASN HXT H N N 44 GLN N N N N 45 GLN CA C N S 46 GLN C C N N 47 GLN O O N N 48 GLN CB C N N 49 GLN CG C N N 50 GLN CD C N N 51 GLN OE1 O N N 52 GLN NE2 N N N 53 GLN OXT O N N 54 GLN H H N N 55 GLN H2 H N N 56 GLN HA H N N 57 GLN HB2 H N N 58 GLN HB3 H N N 59 GLN HG2 H N N 60 GLN HG3 H N N 61 GLN HE21 H N N 62 GLN HE22 H N N 63 GLN HXT H N N 64 ILE N N N N 65 ILE CA C N S 66 ILE C C N N 67 ILE O O N N 68 ILE CB C N S 69 ILE CG1 C N N 70 ILE CG2 C N N 71 ILE CD1 C N N 72 ILE OXT O N N 73 ILE H H N N 74 ILE H2 H N N 75 ILE HA H N N 76 ILE HB H N N 77 ILE HG12 H N N 78 ILE HG13 H N N 79 ILE HG21 H N N 80 ILE HG22 H N N 81 ILE HG23 H N N 82 ILE HD11 H N N 83 ILE HD12 H N N 84 ILE HD13 H N N 85 ILE HXT H N N 86 LYS N N N N 87 LYS CA C N S 88 LYS C C N N 89 LYS O O N N 90 LYS CB C N N 91 LYS CG C N N 92 LYS CD C N N 93 LYS CE C N N 94 LYS NZ N N N 95 LYS OXT O N N 96 LYS H H N N 97 LYS H2 H N N 98 LYS HA H N N 99 LYS HB2 H N N 100 LYS HB3 H N N 101 LYS HG2 H N N 102 LYS HG3 H N N 103 LYS HD2 H N N 104 LYS HD3 H N N 105 LYS HE2 H N N 106 LYS HE3 H N N 107 LYS HZ1 H N N 108 LYS HZ2 H N N 109 LYS HZ3 H N N 110 LYS HXT H N N 111 MET N N N N 112 MET CA C N S 113 MET C C N N 114 MET O O N N 115 MET CB C N N 116 MET CG C N N 117 MET SD S N N 118 MET CE C N N 119 MET OXT O N N 120 MET H H N N 121 MET H2 H N N 122 MET HA H N N 123 MET HB2 H N N 124 MET HB3 H N N 125 MET HG2 H N N 126 MET HG3 H N N 127 MET HE1 H N N 128 MET HE2 H N N 129 MET HE3 H N N 130 MET HXT H N N 131 NH2 N N N N 132 NH2 HN1 H N N 133 NH2 HN2 H N N 134 PHE N N N N 135 PHE CA C N S 136 PHE C C N N 137 PHE O O N N 138 PHE CB C N N 139 PHE CG C Y N 140 PHE CD1 C Y N 141 PHE CD2 C Y N 142 PHE CE1 C Y N 143 PHE CE2 C Y N 144 PHE CZ C Y N 145 PHE OXT O N N 146 PHE H H N N 147 PHE H2 H N N 148 PHE HA H N N 149 PHE HB2 H N N 150 PHE HB3 H N N 151 PHE HD1 H N N 152 PHE HD2 H N N 153 PHE HE1 H N N 154 PHE HE2 H N N 155 PHE HZ H N N 156 PHE HXT H N N 157 TRP N N N N 158 TRP CA C N S 159 TRP C C N N 160 TRP O O N N 161 TRP CB C N N 162 TRP CG C Y N 163 TRP CD1 C Y N 164 TRP CD2 C Y N 165 TRP NE1 N Y N 166 TRP CE2 C Y N 167 TRP CE3 C Y N 168 TRP CZ2 C Y N 169 TRP CZ3 C Y N 170 TRP CH2 C Y N 171 TRP OXT O N N 172 TRP H H N N 173 TRP H2 H N N 174 TRP HA H N N 175 TRP HB2 H N N 176 TRP HB3 H N N 177 TRP HD1 H N N 178 TRP HE1 H N N 179 TRP HE3 H N N 180 TRP HZ2 H N N 181 TRP HZ3 H N N 182 TRP HH2 H N N 183 TRP HXT H N N 184 VAL N N N N 185 VAL CA C N S 186 VAL C C N N 187 VAL O O N N 188 VAL CB C N N 189 VAL CG1 C N N 190 VAL CG2 C N N 191 VAL OXT O N N 192 VAL H H N N 193 VAL H2 H N N 194 VAL HA H N N 195 VAL HB H N N 196 VAL HG11 H N N 197 VAL HG12 H N N 198 VAL HG13 H N N 199 VAL HG21 H N N 200 VAL HG22 H N N 201 VAL HG23 H N N 202 VAL HXT H N N 203 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASN N CA sing N N 27 ASN N H sing N N 28 ASN N H2 sing N N 29 ASN CA C sing N N 30 ASN CA CB sing N N 31 ASN CA HA sing N N 32 ASN C O doub N N 33 ASN C OXT sing N N 34 ASN CB CG sing N N 35 ASN CB HB2 sing N N 36 ASN CB HB3 sing N N 37 ASN CG OD1 doub N N 38 ASN CG ND2 sing N N 39 ASN ND2 HD21 sing N N 40 ASN ND2 HD22 sing N N 41 ASN OXT HXT sing N N 42 GLN N CA sing N N 43 GLN N H sing N N 44 GLN N H2 sing N N 45 GLN CA C sing N N 46 GLN CA CB sing N N 47 GLN CA HA sing N N 48 GLN C O doub N N 49 GLN C OXT sing N N 50 GLN CB CG sing N N 51 GLN CB HB2 sing N N 52 GLN CB HB3 sing N N 53 GLN CG CD sing N N 54 GLN CG HG2 sing N N 55 GLN CG HG3 sing N N 56 GLN CD OE1 doub N N 57 GLN CD NE2 sing N N 58 GLN NE2 HE21 sing N N 59 GLN NE2 HE22 sing N N 60 GLN OXT HXT sing N N 61 ILE N CA sing N N 62 ILE N H sing N N 63 ILE N H2 sing N N 64 ILE CA C sing N N 65 ILE CA CB sing N N 66 ILE CA HA sing N N 67 ILE C O doub N N 68 ILE C OXT sing N N 69 ILE CB CG1 sing N N 70 ILE CB CG2 sing N N 71 ILE CB HB sing N N 72 ILE CG1 CD1 sing N N 73 ILE CG1 HG12 sing N N 74 ILE CG1 HG13 sing N N 75 ILE CG2 HG21 sing N N 76 ILE CG2 HG22 sing N N 77 ILE CG2 HG23 sing N N 78 ILE CD1 HD11 sing N N 79 ILE CD1 HD12 sing N N 80 ILE CD1 HD13 sing N N 81 ILE OXT HXT sing N N 82 LYS N CA sing N N 83 LYS N H sing N N 84 LYS N H2 sing N N 85 LYS CA C sing N N 86 LYS CA CB sing N N 87 LYS CA HA sing N N 88 LYS C O doub N N 89 LYS C OXT sing N N 90 LYS CB CG sing N N 91 LYS CB HB2 sing N N 92 LYS CB HB3 sing N N 93 LYS CG CD sing N N 94 LYS CG HG2 sing N N 95 LYS CG HG3 sing N N 96 LYS CD CE sing N N 97 LYS CD HD2 sing N N 98 LYS CD HD3 sing N N 99 LYS CE NZ sing N N 100 LYS CE HE2 sing N N 101 LYS CE HE3 sing N N 102 LYS NZ HZ1 sing N N 103 LYS NZ HZ2 sing N N 104 LYS NZ HZ3 sing N N 105 LYS OXT HXT sing N N 106 MET N CA sing N N 107 MET N H sing N N 108 MET N H2 sing N N 109 MET CA C sing N N 110 MET CA CB sing N N 111 MET CA HA sing N N 112 MET C O doub N N 113 MET C OXT sing N N 114 MET CB CG sing N N 115 MET CB HB2 sing N N 116 MET CB HB3 sing N N 117 MET CG SD sing N N 118 MET CG HG2 sing N N 119 MET CG HG3 sing N N 120 MET SD CE sing N N 121 MET CE HE1 sing N N 122 MET CE HE2 sing N N 123 MET CE HE3 sing N N 124 MET OXT HXT sing N N 125 NH2 N HN1 sing N N 126 NH2 N HN2 sing N N 127 PHE N CA sing N N 128 PHE N H sing N N 129 PHE N H2 sing N N 130 PHE CA C sing N N 131 PHE CA CB sing N N 132 PHE CA HA sing N N 133 PHE C O doub N N 134 PHE C OXT sing N N 135 PHE CB CG sing N N 136 PHE CB HB2 sing N N 137 PHE CB HB3 sing N N 138 PHE CG CD1 doub Y N 139 PHE CG CD2 sing Y N 140 PHE CD1 CE1 sing Y N 141 PHE CD1 HD1 sing N N 142 PHE CD2 CE2 doub Y N 143 PHE CD2 HD2 sing N N 144 PHE CE1 CZ doub Y N 145 PHE CE1 HE1 sing N N 146 PHE CE2 CZ sing Y N 147 PHE CE2 HE2 sing N N 148 PHE CZ HZ sing N N 149 PHE OXT HXT sing N N 150 TRP N CA sing N N 151 TRP N H sing N N 152 TRP N H2 sing N N 153 TRP CA C sing N N 154 TRP CA CB sing N N 155 TRP CA HA sing N N 156 TRP C O doub N N 157 TRP C OXT sing N N 158 TRP CB CG sing N N 159 TRP CB HB2 sing N N 160 TRP CB HB3 sing N N 161 TRP CG CD1 doub Y N 162 TRP CG CD2 sing Y N 163 TRP CD1 NE1 sing Y N 164 TRP CD1 HD1 sing N N 165 TRP CD2 CE2 doub Y N 166 TRP CD2 CE3 sing Y N 167 TRP NE1 CE2 sing Y N 168 TRP NE1 HE1 sing N N 169 TRP CE2 CZ2 sing Y N 170 TRP CE3 CZ3 doub Y N 171 TRP CE3 HE3 sing N N 172 TRP CZ2 CH2 doub Y N 173 TRP CZ2 HZ2 sing N N 174 TRP CZ3 CH2 sing Y N 175 TRP CZ3 HZ3 sing N N 176 TRP CH2 HH2 sing N N 177 TRP OXT HXT sing N N 178 VAL N CA sing N N 179 VAL N H sing N N 180 VAL N H2 sing N N 181 VAL CA C sing N N 182 VAL CA CB sing N N 183 VAL CA HA sing N N 184 VAL C O doub N N 185 VAL C OXT sing N N 186 VAL CB CG1 sing N N 187 VAL CB CG2 sing N N 188 VAL CB HB sing N N 189 VAL CG1 HG11 sing N N 190 VAL CG1 HG12 sing N N 191 VAL CG1 HG13 sing N N 192 VAL CG2 HG21 sing N N 193 VAL CG2 HG22 sing N N 194 VAL CG2 HG23 sing N N 195 VAL OXT HXT sing N N 196 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 600 # _atom_sites.entry_id 1U62 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_