HEADER ISOMERASE 03-AUG-04 1U79 TITLE CRYSTAL STRUCTURE OF ATFKBP13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: ATFKBP13, PPIASE, ROTAMASE, FK506 BINDING PROTEIN 1; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ATFKBP13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)LYS-S; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-KG KEYWDS TFKBP13, FK-506 BINDING PROTEIN, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GOPALAN,K.SWAMINATHAN REVDAT 4 25-OCT-23 1U79 1 REMARK REVDAT 3 13-JUL-11 1U79 1 VERSN REVDAT 2 24-FEB-09 1U79 1 VERSN REVDAT 1 28-SEP-04 1U79 0 JRNL AUTH G.GOPALAN,Z.HE,Y.BALMER,P.ROMANO,R.GUPTA,B.B.BUCHANAN, JRNL AUTH 2 K.SWAMINATHAN,S.LUAN JRNL TITL STRUCTURAL ANALYSIS UNCOVERS A ROLE FOR REDOX IN REGULATING JRNL TITL 2 FKBP13, AN IMMUNOPHILIN OF THE CHLOROPLAST THYLAKOID LUMEN JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 13945 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15356344 JRNL DOI 10.1073/PNAS.0405240101 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.GUPTA,R.M.MOULD,Z.HE,S.LUAN REMARK 1 TITL A CHLOROPLAST FKBP INTERACTS WITH AND AFFECTS THE REMARK 1 TITL 2 ACCUMULATION OF RIESKE SUBUNIT OF CYTOCHROME BF COMPLEX REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 99 15806 2002 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 12424338 REMARK 1 DOI 10.1073/PNAS.222550399 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 307661.980 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 78.9 REMARK 3 NUMBER OF REFLECTIONS : 44839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4530 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3701 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 403 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 463 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.84000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.870 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.480 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.300 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.460 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.650 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.55 REMARK 3 BSOL : 93.79 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97879 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44839 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : -3.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : 0.25000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: 1YAT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-11% PEG 550MME, 2.5M AMMONIUM REMARK 280 SULFATE, PH 7.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.70200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.70200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.51300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.30300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.51300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.30300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.70200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.51300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.30300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.70200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.51300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.30300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 44.51300 REMARK 350 BIOMT2 1 0.000000 -1.000000 0.000000 63.30300 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -59.70200 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 44.51300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 63.30300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.70200 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 126.60600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 -44.51300 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 63.30300 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 -44.51300 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 63.30300 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 GLU B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 GLU C 1 REMARK 465 THR C 2 REMARK 465 THR C 3 REMARK 465 SER C 4 REMARK 465 GLU D 1 REMARK 465 THR D 2 REMARK 465 THR D 3 REMARK 465 SER D 4 REMARK 465 GLU E 1 REMARK 465 THR E 2 REMARK 465 THR E 3 REMARK 465 SER E 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 48 NH2 ARG C 53 2.16 REMARK 500 CD GLU B 6 O HOH B 130 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD2 LEU C 112 CD2 LEU C 112 3655 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 5 CA - CB - SG ANGL. DEV. = 10.8 DEGREES REMARK 500 CYS B 17 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 LYS C 128 N - CA - C ANGL. DEV. = -25.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 42 1.12 -69.45 REMARK 500 ASP A 48 150.56 178.87 REMARK 500 ALA A 98 -110.70 -128.90 REMARK 500 GLU B 6 80.01 112.37 REMARK 500 PHE B 7 -93.81 -143.62 REMARK 500 SER B 77 -164.13 -166.76 REMARK 500 ALA B 98 -110.80 -130.61 REMARK 500 LYS B 107 78.23 -165.76 REMARK 500 SER C 77 -172.55 -170.34 REMARK 500 ALA C 98 -108.88 -131.27 REMARK 500 CYS C 106 -163.08 -60.14 REMARK 500 LYS C 107 -112.75 -174.57 REMARK 500 LYS C 128 42.51 141.26 REMARK 500 GLU D 6 95.37 59.30 REMARK 500 SER D 77 -165.89 -170.98 REMARK 500 ALA D 98 -110.15 -131.30 REMARK 500 ARG E 53 -15.89 -48.92 REMARK 500 ALA E 98 -109.91 -129.89 REMARK 500 LYS E 107 39.13 -160.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 1U79 A 1 129 UNP Q9SCY2 FKB13_ARATH 80 208 DBREF 1U79 B 1 129 UNP Q9SCY2 FKB13_ARATH 80 208 DBREF 1U79 C 1 129 UNP Q9SCY2 FKB13_ARATH 80 208 DBREF 1U79 D 1 129 UNP Q9SCY2 FKB13_ARATH 80 208 DBREF 1U79 E 1 129 UNP Q9SCY2 FKB13_ARATH 80 208 SEQRES 1 A 129 GLU THR THR SER CYS GLU PHE SER VAL SER PRO SER GLY SEQRES 2 A 129 LEU ALA PHE CYS ASP LYS VAL VAL GLY TYR GLY PRO GLU SEQRES 3 A 129 ALA VAL LYS GLY GLN LEU ILE LYS ALA HIS TYR VAL GLY SEQRES 4 A 129 LYS LEU GLU ASN GLY LYS VAL PHE ASP SER SER TYR ASN SEQRES 5 A 129 ARG GLY LYS PRO LEU THR PHE ARG ILE GLY VAL GLY GLU SEQRES 6 A 129 VAL ILE LYS GLY TRP ASP GLN GLY ILE LEU GLY SER ASP SEQRES 7 A 129 GLY ILE PRO PRO MET LEU THR GLY GLY LYS ARG THR LEU SEQRES 8 A 129 ARG ILE PRO PRO GLU LEU ALA TYR GLY ASP ARG GLY ALA SEQRES 9 A 129 GLY CYS LYS GLY GLY SER CYS LEU ILE PRO PRO ALA SER SEQRES 10 A 129 VAL LEU LEU PHE ASP ILE GLU TYR ILE GLY LYS ALA SEQRES 1 B 129 GLU THR THR SER CYS GLU PHE SER VAL SER PRO SER GLY SEQRES 2 B 129 LEU ALA PHE CYS ASP LYS VAL VAL GLY TYR GLY PRO GLU SEQRES 3 B 129 ALA VAL LYS GLY GLN LEU ILE LYS ALA HIS TYR VAL GLY SEQRES 4 B 129 LYS LEU GLU ASN GLY LYS VAL PHE ASP SER SER TYR ASN SEQRES 5 B 129 ARG GLY LYS PRO LEU THR PHE ARG ILE GLY VAL GLY GLU SEQRES 6 B 129 VAL ILE LYS GLY TRP ASP GLN GLY ILE LEU GLY SER ASP SEQRES 7 B 129 GLY ILE PRO PRO MET LEU THR GLY GLY LYS ARG THR LEU SEQRES 8 B 129 ARG ILE PRO PRO GLU LEU ALA TYR GLY ASP ARG GLY ALA SEQRES 9 B 129 GLY CYS LYS GLY GLY SER CYS LEU ILE PRO PRO ALA SER SEQRES 10 B 129 VAL LEU LEU PHE ASP ILE GLU TYR ILE GLY LYS ALA SEQRES 1 C 129 GLU THR THR SER CYS GLU PHE SER VAL SER PRO SER GLY SEQRES 2 C 129 LEU ALA PHE CYS ASP LYS VAL VAL GLY TYR GLY PRO GLU SEQRES 3 C 129 ALA VAL LYS GLY GLN LEU ILE LYS ALA HIS TYR VAL GLY SEQRES 4 C 129 LYS LEU GLU ASN GLY LYS VAL PHE ASP SER SER TYR ASN SEQRES 5 C 129 ARG GLY LYS PRO LEU THR PHE ARG ILE GLY VAL GLY GLU SEQRES 6 C 129 VAL ILE LYS GLY TRP ASP GLN GLY ILE LEU GLY SER ASP SEQRES 7 C 129 GLY ILE PRO PRO MET LEU THR GLY GLY LYS ARG THR LEU SEQRES 8 C 129 ARG ILE PRO PRO GLU LEU ALA TYR GLY ASP ARG GLY ALA SEQRES 9 C 129 GLY CYS LYS GLY GLY SER CYS LEU ILE PRO PRO ALA SER SEQRES 10 C 129 VAL LEU LEU PHE ASP ILE GLU TYR ILE GLY LYS ALA SEQRES 1 D 129 GLU THR THR SER CYS GLU PHE SER VAL SER PRO SER GLY SEQRES 2 D 129 LEU ALA PHE CYS ASP LYS VAL VAL GLY TYR GLY PRO GLU SEQRES 3 D 129 ALA VAL LYS GLY GLN LEU ILE LYS ALA HIS TYR VAL GLY SEQRES 4 D 129 LYS LEU GLU ASN GLY LYS VAL PHE ASP SER SER TYR ASN SEQRES 5 D 129 ARG GLY LYS PRO LEU THR PHE ARG ILE GLY VAL GLY GLU SEQRES 6 D 129 VAL ILE LYS GLY TRP ASP GLN GLY ILE LEU GLY SER ASP SEQRES 7 D 129 GLY ILE PRO PRO MET LEU THR GLY GLY LYS ARG THR LEU SEQRES 8 D 129 ARG ILE PRO PRO GLU LEU ALA TYR GLY ASP ARG GLY ALA SEQRES 9 D 129 GLY CYS LYS GLY GLY SER CYS LEU ILE PRO PRO ALA SER SEQRES 10 D 129 VAL LEU LEU PHE ASP ILE GLU TYR ILE GLY LYS ALA SEQRES 1 E 129 GLU THR THR SER CYS GLU PHE SER VAL SER PRO SER GLY SEQRES 2 E 129 LEU ALA PHE CYS ASP LYS VAL VAL GLY TYR GLY PRO GLU SEQRES 3 E 129 ALA VAL LYS GLY GLN LEU ILE LYS ALA HIS TYR VAL GLY SEQRES 4 E 129 LYS LEU GLU ASN GLY LYS VAL PHE ASP SER SER TYR ASN SEQRES 5 E 129 ARG GLY LYS PRO LEU THR PHE ARG ILE GLY VAL GLY GLU SEQRES 6 E 129 VAL ILE LYS GLY TRP ASP GLN GLY ILE LEU GLY SER ASP SEQRES 7 E 129 GLY ILE PRO PRO MET LEU THR GLY GLY LYS ARG THR LEU SEQRES 8 E 129 ARG ILE PRO PRO GLU LEU ALA TYR GLY ASP ARG GLY ALA SEQRES 9 E 129 GLY CYS LYS GLY GLY SER CYS LEU ILE PRO PRO ALA SER SEQRES 10 E 129 VAL LEU LEU PHE ASP ILE GLU TYR ILE GLY LYS ALA FORMUL 6 HOH *463(H2 O) HELIX 1 1 SER A 50 GLY A 54 1 5 HELIX 2 2 ILE A 67 GLY A 76 1 10 HELIX 3 3 PRO A 94 ALA A 98 5 5 HELIX 4 4 SER B 50 GLY B 54 1 5 HELIX 5 5 ILE B 67 GLY B 76 1 10 HELIX 6 6 PRO B 94 ALA B 98 5 5 HELIX 7 7 SER C 50 GLY C 54 1 5 HELIX 8 8 ILE C 67 LEU C 75 1 9 HELIX 9 9 PRO C 94 ALA C 98 5 5 HELIX 10 10 SER D 50 GLY D 54 1 5 HELIX 11 11 ILE D 67 GLY D 76 1 10 HELIX 12 12 PRO D 94 ALA D 98 5 5 HELIX 13 13 SER E 50 GLY E 54 1 5 HELIX 14 14 ILE E 67 GLY E 76 1 10 HELIX 15 15 PRO E 94 ALA E 98 5 5 SHEET 1 A 6 SER A 8 VAL A 9 0 SHEET 2 A 6 ALA A 15 VAL A 20 -1 O PHE A 16 N SER A 8 SHEET 3 A 6 LYS A 88 ILE A 93 -1 O LYS A 88 N VAL A 20 SHEET 4 A 6 LEU A 119 LYS A 128 -1 O ILE A 123 N ARG A 89 SHEET 5 A 6 LEU A 32 LYS A 40 -1 N LYS A 40 O LEU A 120 SHEET 6 A 6 VAL A 46 SER A 49 -1 O ASP A 48 N GLY A 39 SHEET 1 B 6 SER A 8 VAL A 9 0 SHEET 2 B 6 ALA A 15 VAL A 20 -1 O PHE A 16 N SER A 8 SHEET 3 B 6 LYS A 88 ILE A 93 -1 O LYS A 88 N VAL A 20 SHEET 4 B 6 LEU A 119 LYS A 128 -1 O ILE A 123 N ARG A 89 SHEET 5 B 6 LEU A 32 LYS A 40 -1 N LYS A 40 O LEU A 120 SHEET 6 B 6 LEU A 57 ARG A 60 -1 O LEU A 57 N ALA A 35 SHEET 1 C 2 ALA A 104 LYS A 107 0 SHEET 2 C 2 SER A 110 ILE A 113 -1 O SER A 110 N LYS A 107 SHEET 1 D 6 SER B 8 VAL B 9 0 SHEET 2 D 6 ALA B 15 VAL B 20 -1 O PHE B 16 N SER B 8 SHEET 3 D 6 LYS B 88 ILE B 93 -1 O LYS B 88 N VAL B 20 SHEET 4 D 6 LEU B 119 LYS B 128 -1 O ILE B 123 N ARG B 89 SHEET 5 D 6 LEU B 32 LYS B 40 -1 N LYS B 40 O LEU B 120 SHEET 6 D 6 VAL B 46 SER B 49 -1 O ASP B 48 N GLY B 39 SHEET 1 E 6 SER B 8 VAL B 9 0 SHEET 2 E 6 ALA B 15 VAL B 20 -1 O PHE B 16 N SER B 8 SHEET 3 E 6 LYS B 88 ILE B 93 -1 O LYS B 88 N VAL B 20 SHEET 4 E 6 LEU B 119 LYS B 128 -1 O ILE B 123 N ARG B 89 SHEET 5 E 6 LEU B 32 LYS B 40 -1 N LYS B 40 O LEU B 120 SHEET 6 E 6 LEU B 57 ARG B 60 -1 O LEU B 57 N ALA B 35 SHEET 1 F 2 ALA B 104 CYS B 106 0 SHEET 2 F 2 CYS B 111 ILE B 113 -1 O ILE B 113 N ALA B 104 SHEET 1 G 6 SER C 8 VAL C 9 0 SHEET 2 G 6 ALA C 15 VAL C 20 -1 O PHE C 16 N SER C 8 SHEET 3 G 6 LYS C 88 ILE C 93 -1 O LYS C 88 N VAL C 20 SHEET 4 G 6 LEU C 119 GLY C 127 -1 O ILE C 123 N ARG C 89 SHEET 5 G 6 LEU C 32 LEU C 41 -1 N LYS C 40 O LEU C 120 SHEET 6 G 6 VAL C 46 SER C 49 -1 O ASP C 48 N GLY C 39 SHEET 1 H 6 SER C 8 VAL C 9 0 SHEET 2 H 6 ALA C 15 VAL C 20 -1 O PHE C 16 N SER C 8 SHEET 3 H 6 LYS C 88 ILE C 93 -1 O LYS C 88 N VAL C 20 SHEET 4 H 6 LEU C 119 GLY C 127 -1 O ILE C 123 N ARG C 89 SHEET 5 H 6 LEU C 32 LEU C 41 -1 N LYS C 40 O LEU C 120 SHEET 6 H 6 LEU C 57 ARG C 60 -1 O PHE C 59 N ILE C 33 SHEET 1 I 6 SER D 8 VAL D 9 0 SHEET 2 I 6 ALA D 15 VAL D 20 -1 O PHE D 16 N SER D 8 SHEET 3 I 6 LYS D 88 ILE D 93 -1 O ARG D 92 N ALA D 15 SHEET 4 I 6 LEU D 119 LYS D 128 -1 O ILE D 123 N ARG D 89 SHEET 5 I 6 LEU D 32 LEU D 41 -1 N HIS D 36 O GLU D 124 SHEET 6 I 6 VAL D 46 SER D 49 -1 O ASP D 48 N GLY D 39 SHEET 1 J 6 SER D 8 VAL D 9 0 SHEET 2 J 6 ALA D 15 VAL D 20 -1 O PHE D 16 N SER D 8 SHEET 3 J 6 LYS D 88 ILE D 93 -1 O ARG D 92 N ALA D 15 SHEET 4 J 6 LEU D 119 LYS D 128 -1 O ILE D 123 N ARG D 89 SHEET 5 J 6 LEU D 32 LEU D 41 -1 N HIS D 36 O GLU D 124 SHEET 6 J 6 LEU D 57 ARG D 60 -1 O PHE D 59 N ILE D 33 SHEET 1 K 2 ALA D 104 LYS D 107 0 SHEET 2 K 2 SER D 110 ILE D 113 -1 O ILE D 113 N ALA D 104 SHEET 1 L 6 SER E 8 VAL E 9 0 SHEET 2 L 6 ALA E 15 VAL E 20 -1 O PHE E 16 N SER E 8 SHEET 3 L 6 LYS E 88 ILE E 93 -1 O LYS E 88 N VAL E 20 SHEET 4 L 6 LEU E 119 LYS E 128 -1 O ILE E 123 N ARG E 89 SHEET 5 L 6 LEU E 32 LEU E 41 -1 N LYS E 40 O LEU E 120 SHEET 6 L 6 VAL E 46 SER E 49 -1 O ASP E 48 N GLY E 39 SHEET 1 M 6 SER E 8 VAL E 9 0 SHEET 2 M 6 ALA E 15 VAL E 20 -1 O PHE E 16 N SER E 8 SHEET 3 M 6 LYS E 88 ILE E 93 -1 O LYS E 88 N VAL E 20 SHEET 4 M 6 LEU E 119 LYS E 128 -1 O ILE E 123 N ARG E 89 SHEET 5 M 6 LEU E 32 LEU E 41 -1 N LYS E 40 O LEU E 120 SHEET 6 M 6 LEU E 57 ARG E 60 -1 O PHE E 59 N ILE E 33 SSBOND 1 CYS A 5 CYS A 17 1555 1555 2.04 SSBOND 2 CYS A 106 CYS A 111 1555 1555 2.04 SSBOND 3 CYS B 5 CYS B 17 1555 1555 2.05 SSBOND 4 CYS B 106 CYS B 111 1555 1555 2.03 SSBOND 5 CYS C 5 CYS C 17 1555 1555 2.04 SSBOND 6 CYS C 106 CYS C 111 1555 1555 2.02 SSBOND 7 CYS D 5 CYS D 17 1555 1555 2.03 SSBOND 8 CYS D 106 CYS D 111 1555 1555 2.03 SSBOND 9 CYS E 5 CYS E 17 1555 1555 2.02 SSBOND 10 CYS E 106 CYS E 111 1555 1555 2.03 CRYST1 89.026 126.606 119.404 90.00 90.00 90.00 C 2 2 21 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008375 0.00000