HEADER LYASE 03-AUG-04 1U7H TITLE STRUCTURE AND A PROPOSED MECHANISM FOR ORNITHINE CYCLODEAMINASE FROM TITLE 2 PSEUDOMONAS PUTIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORNITHINE CYCLODEAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.3.1.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: ORNITHINE CYCLASE (DEAMINATING); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) AND D834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A(+) AND PET-21A-OCD KEYWDS DEAMINASE, BINDS NAD+, BINDS L-ORNITHINE, BINDS L-PRO, HELIX BUNDLE, KEYWDS 2 BETA BARREL, ROSSMANN FOLD, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ALAM,J.L.GOODMAN,S.WANG,F.J.RUZICKA,P.A.FREY,J.E.WEDEKIND REVDAT 3 03-APR-24 1U7H 1 REMARK LINK REVDAT 2 24-FEB-09 1U7H 1 VERSN REVDAT 1 09-NOV-04 1U7H 0 JRNL AUTH J.L.GOODMAN,S.WANG,S.ALAM,F.J.RUZICKA,P.A.FREY,J.E.WEDEKIND JRNL TITL ORNITHINE CYCLODEAMINASE: STRUCTURE, MECHANISM OF ACTION, JRNL TITL 2 AND IMPLICATIONS FOR THE U-CRYSTALLIN FAMILY; JRNL REF BIOCHEMISTRY V. 43 13883 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15518536 JRNL DOI 10.1021/BI048207I REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.ALAM,S.C.WANG,F.J.RUZICKA,P.A.FREY,J.E.WEDEKIND REMARK 1 TITL CRYSTALLIZATION AND X-RAY DIFFRACTION ANALYSIS OF ORNITHINE REMARK 1 TITL 2 CYCLODEAMINASE FROM PSEUDOMONAS PUTIDA REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 941 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1988464.170 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 61208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3102 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9443 REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE : 0.1980 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 507 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5247 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 749 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : 0.06 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.064 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.996 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.540 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.811 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 60.90 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NAD_XPLOR.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : MPD.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NAD_XPLOR.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : MPD.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946, 0.97888, 0.96114 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 SI(111) REMARK 200 OPTICS : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 SI(111), BEAM FOCUSED BY A REMARK 200 TOROIDAL MIRROR. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62180 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 39.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37500 REMARK 200 FOR SHELL : 7.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: EXPERIMENTAL PHASES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-MES AND 40% MPD, PH 6.25, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT IS A DIMER OF IDENTICAL SUBUNITS COMPRISING REMARK 300 CHAINS A AND B. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 343 REMARK 465 ARG A 344 REMARK 465 ARG A 345 REMARK 465 ILE A 346 REMARK 465 ARG A 347 REMARK 465 ARG A 348 REMARK 465 VAL A 349 REMARK 465 ALA A 350 REMARK 465 ALA B 341 REMARK 465 GLY B 342 REMARK 465 LYS B 343 REMARK 465 ARG B 344 REMARK 465 ARG B 345 REMARK 465 ILE B 346 REMARK 465 ARG B 347 REMARK 465 ARG B 348 REMARK 465 VAL B 349 REMARK 465 ALA B 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 36 32.76 -99.55 REMARK 500 ASP A 62 -163.95 -119.83 REMARK 500 LEU A 105 13.92 -140.07 REMARK 500 ARG A 130 -15.13 -141.94 REMARK 500 THR A 209 63.48 -111.05 REMARK 500 ASP A 228 28.60 -162.01 REMARK 500 GLU A 248 -92.43 -88.11 REMARK 500 TRP A 325 -139.51 -106.20 REMARK 500 ASP A 332 72.27 -102.90 REMARK 500 ASP B 62 -161.17 -121.25 REMARK 500 LEU B 105 13.16 -141.27 REMARK 500 ARG B 130 -18.20 -143.82 REMARK 500 THR B 209 69.21 -114.35 REMARK 500 ASP B 228 29.99 -163.01 REMARK 500 GLU B 248 -89.89 -84.65 REMARK 500 TRP B 325 -146.30 -99.76 REMARK 500 ASP B 332 71.91 -103.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 911 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 224 O REMARK 620 2 GLY A 227 O 164.5 REMARK 620 3 SER A 293 O 81.9 88.6 REMARK 620 4 HOH A 992 O 118.7 74.8 99.3 REMARK 620 5 HOH A 994 O 88.3 99.7 168.6 90.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 912 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 224 O REMARK 620 2 GLY B 227 O 166.8 REMARK 620 3 SER B 293 O 82.6 87.1 REMARK 620 4 HOH B1104 O 88.1 101.9 170.5 REMARK 620 5 HOH B1105 O 116.3 72.9 95.4 90.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 911 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 912 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 905 DBREF 1U7H A 1 350 UNP Q88H32 Q88H32_PSEPK 1 350 DBREF 1U7H B 1 350 UNP Q88H32 Q88H32_PSEPK 1 350 SEQADV 1U7H MSE A 10 UNP Q88H32 MET 10 MODIFIED RESIDUE SEQADV 1U7H MSE A 58 UNP Q88H32 MET 58 MODIFIED RESIDUE SEQADV 1U7H MSE A 86 UNP Q88H32 MET 86 MODIFIED RESIDUE SEQADV 1U7H MSE A 119 UNP Q88H32 MET 119 MODIFIED RESIDUE SEQADV 1U7H MSE A 132 UNP Q88H32 MET 132 MODIFIED RESIDUE SEQADV 1U7H MSE A 215 UNP Q88H32 MET 215 MODIFIED RESIDUE SEQADV 1U7H MSE A 220 UNP Q88H32 MET 220 MODIFIED RESIDUE SEQADV 1U7H MSE A 316 UNP Q88H32 MET 316 MODIFIED RESIDUE SEQADV 1U7H MSE B 10 UNP Q88H32 MET 10 MODIFIED RESIDUE SEQADV 1U7H MSE B 58 UNP Q88H32 MET 58 MODIFIED RESIDUE SEQADV 1U7H MSE B 86 UNP Q88H32 MET 86 MODIFIED RESIDUE SEQADV 1U7H MSE B 119 UNP Q88H32 MET 119 MODIFIED RESIDUE SEQADV 1U7H MSE B 132 UNP Q88H32 MET 132 MODIFIED RESIDUE SEQADV 1U7H MSE B 215 UNP Q88H32 MET 215 MODIFIED RESIDUE SEQADV 1U7H MSE B 220 UNP Q88H32 MET 220 MODIFIED RESIDUE SEQADV 1U7H MSE B 316 UNP Q88H32 MET 316 MODIFIED RESIDUE SEQRES 1 A 350 MET THR TYR PHE ILE ASP VAL PRO THR MSE SER ASP LEU SEQRES 2 A 350 VAL HIS ASP ILE GLY VAL ALA PRO PHE ILE GLY GLU LEU SEQRES 3 A 350 ALA ALA ALA LEU ARG ASP ASP PHE LYS ARG TRP GLN ALA SEQRES 4 A 350 PHE ASP LYS SER ALA ARG VAL ALA SER HIS SER GLU VAL SEQRES 5 A 350 GLY VAL ILE GLU LEU MSE PRO VAL ALA ASP LYS SER ARG SEQRES 6 A 350 TYR ALA PHE LYS TYR VAL ASN GLY HIS PRO ALA ASN THR SEQRES 7 A 350 ALA ARG ASN LEU HIS THR VAL MSE ALA PHE GLY VAL LEU SEQRES 8 A 350 ALA ASP VAL ASP SER GLY TYR PRO VAL LEU LEU SER GLU SEQRES 9 A 350 LEU THR ILE ALA THR ALA LEU ARG THR ALA ALA THR SER SEQRES 10 A 350 LEU MSE ALA ALA GLN ALA LEU ALA ARG PRO ASN ALA ARG SEQRES 11 A 350 LYS MSE ALA LEU ILE GLY ASN GLY ALA GLN SER GLU PHE SEQRES 12 A 350 GLN ALA LEU ALA PHE HIS LYS HIS LEU GLY ILE GLU GLU SEQRES 13 A 350 ILE VAL ALA TYR ASP THR ASP PRO LEU ALA THR ALA LYS SEQRES 14 A 350 LEU ILE ALA ASN LEU LYS GLU TYR SER GLY LEU THR ILE SEQRES 15 A 350 ARG ARG ALA SER SER VAL ALA GLU ALA VAL LYS GLY VAL SEQRES 16 A 350 ASP ILE ILE THR THR VAL THR ALA ASP LYS ALA TYR ALA SEQRES 17 A 350 THR ILE ILE THR PRO ASP MSE LEU GLU PRO GLY MSE HIS SEQRES 18 A 350 LEU ASN ALA VAL GLY GLY ASP CYS PRO GLY LYS THR GLU SEQRES 19 A 350 LEU HIS ALA ASP VAL LEU ARG ASN ALA ARG VAL PHE VAL SEQRES 20 A 350 GLU TYR GLU PRO GLN THR ARG ILE GLU GLY GLU ILE GLN SEQRES 21 A 350 GLN LEU PRO ALA ASP PHE PRO VAL VAL ASP LEU TRP ARG SEQRES 22 A 350 VAL LEU ARG GLY GLU THR GLU GLY ARG GLN SER ASP SER SEQRES 23 A 350 GLN VAL THR VAL PHE ASP SER VAL GLY PHE ALA LEU GLU SEQRES 24 A 350 ASP TYR THR VAL LEU ARG TYR VAL LEU GLN GLN ALA GLU SEQRES 25 A 350 LYS ARG GLY MSE GLY THR LYS ILE ASP LEU VAL PRO TRP SEQRES 26 A 350 VAL GLU ASP ASP PRO LYS ASP LEU PHE SER HIS THR ARG SEQRES 27 A 350 GLY ARG ALA GLY LYS ARG ARG ILE ARG ARG VAL ALA SEQRES 1 B 350 MET THR TYR PHE ILE ASP VAL PRO THR MSE SER ASP LEU SEQRES 2 B 350 VAL HIS ASP ILE GLY VAL ALA PRO PHE ILE GLY GLU LEU SEQRES 3 B 350 ALA ALA ALA LEU ARG ASP ASP PHE LYS ARG TRP GLN ALA SEQRES 4 B 350 PHE ASP LYS SER ALA ARG VAL ALA SER HIS SER GLU VAL SEQRES 5 B 350 GLY VAL ILE GLU LEU MSE PRO VAL ALA ASP LYS SER ARG SEQRES 6 B 350 TYR ALA PHE LYS TYR VAL ASN GLY HIS PRO ALA ASN THR SEQRES 7 B 350 ALA ARG ASN LEU HIS THR VAL MSE ALA PHE GLY VAL LEU SEQRES 8 B 350 ALA ASP VAL ASP SER GLY TYR PRO VAL LEU LEU SER GLU SEQRES 9 B 350 LEU THR ILE ALA THR ALA LEU ARG THR ALA ALA THR SER SEQRES 10 B 350 LEU MSE ALA ALA GLN ALA LEU ALA ARG PRO ASN ALA ARG SEQRES 11 B 350 LYS MSE ALA LEU ILE GLY ASN GLY ALA GLN SER GLU PHE SEQRES 12 B 350 GLN ALA LEU ALA PHE HIS LYS HIS LEU GLY ILE GLU GLU SEQRES 13 B 350 ILE VAL ALA TYR ASP THR ASP PRO LEU ALA THR ALA LYS SEQRES 14 B 350 LEU ILE ALA ASN LEU LYS GLU TYR SER GLY LEU THR ILE SEQRES 15 B 350 ARG ARG ALA SER SER VAL ALA GLU ALA VAL LYS GLY VAL SEQRES 16 B 350 ASP ILE ILE THR THR VAL THR ALA ASP LYS ALA TYR ALA SEQRES 17 B 350 THR ILE ILE THR PRO ASP MSE LEU GLU PRO GLY MSE HIS SEQRES 18 B 350 LEU ASN ALA VAL GLY GLY ASP CYS PRO GLY LYS THR GLU SEQRES 19 B 350 LEU HIS ALA ASP VAL LEU ARG ASN ALA ARG VAL PHE VAL SEQRES 20 B 350 GLU TYR GLU PRO GLN THR ARG ILE GLU GLY GLU ILE GLN SEQRES 21 B 350 GLN LEU PRO ALA ASP PHE PRO VAL VAL ASP LEU TRP ARG SEQRES 22 B 350 VAL LEU ARG GLY GLU THR GLU GLY ARG GLN SER ASP SER SEQRES 23 B 350 GLN VAL THR VAL PHE ASP SER VAL GLY PHE ALA LEU GLU SEQRES 24 B 350 ASP TYR THR VAL LEU ARG TYR VAL LEU GLN GLN ALA GLU SEQRES 25 B 350 LYS ARG GLY MSE GLY THR LYS ILE ASP LEU VAL PRO TRP SEQRES 26 B 350 VAL GLU ASP ASP PRO LYS ASP LEU PHE SER HIS THR ARG SEQRES 27 B 350 GLY ARG ALA GLY LYS ARG ARG ILE ARG ARG VAL ALA MODRES 1U7H MSE A 10 MET SELENOMETHIONINE MODRES 1U7H MSE A 58 MET SELENOMETHIONINE MODRES 1U7H MSE A 86 MET SELENOMETHIONINE MODRES 1U7H MSE A 119 MET SELENOMETHIONINE MODRES 1U7H MSE A 132 MET SELENOMETHIONINE MODRES 1U7H MSE A 215 MET SELENOMETHIONINE MODRES 1U7H MSE A 220 MET SELENOMETHIONINE MODRES 1U7H MSE A 316 MET SELENOMETHIONINE MODRES 1U7H MSE B 10 MET SELENOMETHIONINE MODRES 1U7H MSE B 58 MET SELENOMETHIONINE MODRES 1U7H MSE B 86 MET SELENOMETHIONINE MODRES 1U7H MSE B 119 MET SELENOMETHIONINE MODRES 1U7H MSE B 132 MET SELENOMETHIONINE MODRES 1U7H MSE B 215 MET SELENOMETHIONINE MODRES 1U7H MSE B 220 MET SELENOMETHIONINE MODRES 1U7H MSE B 316 MET SELENOMETHIONINE HET MSE A 10 8 HET MSE A 58 8 HET MSE A 86 8 HET MSE A 119 8 HET MSE A 132 8 HET MSE A 215 8 HET MSE A 220 8 HET MSE A 316 8 HET MSE B 10 8 HET MSE B 58 8 HET MSE B 86 8 HET MSE B 119 8 HET MSE B 132 8 HET MSE B 215 8 HET MSE B 220 8 HET MSE B 316 8 HET NA A 911 1 HET NAD A 802 44 HET MPD A 901 8 HET MPD A 902 8 HET MPD A 904 8 HET NA B 912 1 HET NAD B 801 44 HET MPD B 903 8 HET MPD B 905 8 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 NA 2(NA 1+) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 MPD 5(C6 H14 O2) FORMUL 12 HOH *749(H2 O) HELIX 1 1 ASP A 6 GLY A 18 1 13 HELIX 2 2 GLY A 18 ARG A 36 1 19 HELIX 3 3 TRP A 37 PHE A 40 5 4 HELIX 4 4 HIS A 74 ASN A 81 5 8 HELIX 5 5 LEU A 105 ALA A 125 1 21 HELIX 6 6 GLN A 140 LEU A 152 1 13 HELIX 7 7 ASP A 163 LYS A 175 1 13 HELIX 8 8 SER A 187 LYS A 193 1 7 HELIX 9 9 THR A 212 LEU A 216 5 5 HELIX 10 10 HIS A 236 ASN A 242 1 7 HELIX 11 11 TYR A 249 GLY A 257 1 9 HELIX 12 12 GLU A 258 LEU A 262 5 5 HELIX 13 13 LEU A 271 ARG A 276 1 6 HELIX 14 14 PHE A 296 LYS A 313 1 18 HELIX 15 15 LEU A 333 GLY A 339 5 7 HELIX 16 16 ASP B 6 GLY B 18 1 13 HELIX 17 17 GLY B 18 ARG B 36 1 19 HELIX 18 18 TRP B 37 PHE B 40 5 4 HELIX 19 19 PRO B 75 ASN B 81 5 7 HELIX 20 20 LEU B 105 ALA B 125 1 21 HELIX 21 21 GLN B 140 LEU B 152 1 13 HELIX 22 22 ASP B 163 LYS B 175 1 13 HELIX 23 23 SER B 187 LYS B 193 1 7 HELIX 24 24 THR B 212 LEU B 216 5 5 HELIX 25 25 HIS B 236 ASN B 242 1 7 HELIX 26 26 TYR B 249 GLY B 257 1 9 HELIX 27 27 GLU B 258 LEU B 262 5 5 HELIX 28 28 LEU B 271 ARG B 276 1 6 HELIX 29 29 PHE B 296 GLY B 315 1 20 HELIX 30 30 LEU B 333 GLY B 339 5 7 SHEET 1 A 7 VAL A 46 HIS A 49 0 SHEET 2 A 7 VAL A 54 ALA A 61 -1 O ILE A 55 N SER A 48 SHEET 3 A 7 ARG A 65 GLY A 73 -1 O VAL A 71 N GLU A 56 SHEET 4 A 7 ALA A 87 ASP A 93 -1 O ALA A 92 N TYR A 66 SHEET 5 A 7 PRO A 99 GLU A 104 -1 O SER A 103 N GLY A 89 SHEET 6 A 7 TYR A 3 ILE A 5 1 N TYR A 3 O LEU A 102 SHEET 7 A 7 THR A 318 LYS A 319 -1 O THR A 318 N PHE A 4 SHEET 1 B 8 THR A 181 ARG A 184 0 SHEET 2 B 8 GLU A 156 TYR A 160 1 N ILE A 157 O THR A 181 SHEET 3 B 8 LYS A 131 ILE A 135 1 SHEET 4 B 8 ILE A 197 THR A 200 1 O THR A 199 N ALA A 133 SHEET 5 B 8 HIS A 221 ALA A 224 1 O ASN A 223 N ILE A 198 SHEET 6 B 8 THR A 289 ASP A 292 1 O THR A 289 N LEU A 222 SHEET 7 B 8 ARG A 244 VAL A 247 1 N PHE A 246 O VAL A 290 SHEET 8 B 8 VAL A 269 ASP A 270 1 O VAL A 269 N VAL A 245 SHEET 1 C 2 TYR A 207 ILE A 211 0 SHEET 2 C 2 THR A 233 LEU A 235 1 O THR A 233 N ALA A 208 SHEET 1 D 7 VAL B 46 HIS B 49 0 SHEET 2 D 7 VAL B 54 ALA B 61 -1 O ILE B 55 N SER B 48 SHEET 3 D 7 ARG B 65 GLY B 73 -1 O VAL B 71 N GLU B 56 SHEET 4 D 7 VAL B 85 ASP B 93 -1 O ALA B 92 N TYR B 66 SHEET 5 D 7 PRO B 99 GLU B 104 -1 O SER B 103 N GLY B 89 SHEET 6 D 7 THR B 2 ILE B 5 1 N TYR B 3 O VAL B 100 SHEET 7 D 7 THR B 318 ILE B 320 -1 O THR B 318 N PHE B 4 SHEET 1 E 8 THR B 181 ARG B 184 0 SHEET 2 E 8 GLU B 156 TYR B 160 1 N ILE B 157 O THR B 181 SHEET 3 E 8 LYS B 131 ILE B 135 1 SHEET 4 E 8 ILE B 197 THR B 200 1 O THR B 199 N ALA B 133 SHEET 5 E 8 HIS B 221 ALA B 224 1 O ASN B 223 N ILE B 198 SHEET 6 E 8 THR B 289 ASP B 292 1 O THR B 289 N LEU B 222 SHEET 7 E 8 ARG B 244 VAL B 247 1 N PHE B 246 O VAL B 290 SHEET 8 E 8 VAL B 269 ASP B 270 1 O VAL B 269 N VAL B 245 SHEET 1 F 2 TYR B 207 ILE B 211 0 SHEET 2 F 2 THR B 233 LEU B 235 1 O GLU B 234 N ILE B 211 LINK C THR A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N SER A 11 1555 1555 1.33 LINK C LEU A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N PRO A 59 1555 1555 1.34 LINK C VAL A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N ALA A 87 1555 1555 1.33 LINK C LEU A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N ALA A 120 1555 1555 1.33 LINK C LYS A 131 N MSE A 132 1555 1555 1.33 LINK C MSE A 132 N ALA A 133 1555 1555 1.33 LINK C ASP A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N LEU A 216 1555 1555 1.33 LINK C GLY A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N HIS A 221 1555 1555 1.33 LINK C GLY A 315 N MSE A 316 1555 1555 1.33 LINK C MSE A 316 N GLY A 317 1555 1555 1.33 LINK C THR B 9 N MSE B 10 1555 1555 1.33 LINK C MSE B 10 N SER B 11 1555 1555 1.33 LINK C LEU B 57 N MSE B 58 1555 1555 1.33 LINK C MSE B 58 N PRO B 59 1555 1555 1.34 LINK C VAL B 85 N MSE B 86 1555 1555 1.33 LINK C MSE B 86 N ALA B 87 1555 1555 1.33 LINK C LEU B 118 N MSE B 119 1555 1555 1.33 LINK C MSE B 119 N ALA B 120 1555 1555 1.33 LINK C LYS B 131 N MSE B 132 1555 1555 1.33 LINK C MSE B 132 N ALA B 133 1555 1555 1.33 LINK C ASP B 214 N MSE B 215 1555 1555 1.33 LINK C MSE B 215 N LEU B 216 1555 1555 1.33 LINK C GLY B 219 N MSE B 220 1555 1555 1.33 LINK C MSE B 220 N HIS B 221 1555 1555 1.33 LINK C GLY B 315 N MSE B 316 1555 1555 1.33 LINK C MSE B 316 N GLY B 317 1555 1555 1.33 LINK O ALA A 224 NA NA A 911 1555 1555 2.55 LINK O GLY A 227 NA NA A 911 1555 1555 2.44 LINK O SER A 293 NA NA A 911 1555 1555 2.41 LINK NA NA A 911 O HOH A 992 1555 1555 2.54 LINK NA NA A 911 O HOH A 994 1555 1555 2.52 LINK O ALA B 224 NA NA B 912 1555 1555 2.55 LINK O GLY B 227 NA NA B 912 1555 1555 2.47 LINK O SER B 293 NA NA B 912 1555 1555 2.41 LINK NA NA B 912 O HOH B1104 1555 1555 2.53 LINK NA NA B 912 O HOH B1105 1555 1555 2.43 SITE 1 AC1 6 ALA A 224 VAL A 225 GLY A 227 SER A 293 SITE 2 AC1 6 HOH A 992 HOH A 994 SITE 1 AC2 6 ALA B 224 VAL B 225 GLY B 227 SER B 293 SITE 2 AC2 6 HOH B1104 HOH B1105 SITE 1 AC3 30 LYS A 331 HOH A1021 HOH A1143 THR B 84 SITE 2 AC3 30 ARG B 112 THR B 113 GLY B 138 ALA B 139 SITE 3 AC3 30 GLN B 140 ASP B 161 THR B 162 VAL B 201 SITE 4 AC3 30 THR B 202 ALA B 203 ILE B 210 VAL B 225 SITE 5 AC3 30 GLY B 226 ASP B 228 LYS B 232 SER B 293 SITE 6 AC3 30 VAL B 294 GLY B 295 HOH B1080 HOH B1087 SITE 7 AC3 30 HOH B1096 HOH B1097 HOH B1101 HOH B1109 SITE 8 AC3 30 HOH B1143 HOH B1144 SITE 1 AC4 30 THR A 84 ARG A 112 THR A 113 GLY A 138 SITE 2 AC4 30 ALA A 139 GLN A 140 ASP A 161 THR A 162 SITE 3 AC4 30 VAL A 201 THR A 202 ALA A 203 ILE A 210 SITE 4 AC4 30 VAL A 225 GLY A 226 ASP A 228 LYS A 232 SITE 5 AC4 30 SER A 293 VAL A 294 GLY A 295 HOH A 971 SITE 6 AC4 30 HOH A 973 HOH A 977 HOH A 998 HOH A1002 SITE 7 AC4 30 HOH A1003 HOH A1004 HOH A1016 HOH A1018 SITE 8 AC4 30 HOH A1211 LYS B 331 SITE 1 AC5 5 GLN A 38 ALA A 39 ALA A 61 ASP A 62 SITE 2 AC5 5 LYS A 63 SITE 1 AC6 8 ALA A 39 HOH A1149 HOH A1150 LEU B 216 SITE 2 AC6 8 PRO B 218 SER B 286 VAL B 288 HOH B 992 SITE 1 AC7 9 SER B 64 ARG B 65 ALA B 92 ASP B 93 SITE 2 AC7 9 VAL B 100 LEU B 308 HOH B1254 HOH B1255 SITE 3 AC7 9 HOH B1256 SITE 1 AC8 5 TYR A 3 ALA A 311 GLU A 312 GLY A 315 SITE 2 AC8 5 MSE A 316 SITE 1 AC9 5 TYR B 3 ALA B 311 GLU B 312 GLY B 315 SITE 2 AC9 5 MSE B 316 CRYST1 69.900 78.600 119.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014306 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008340 0.00000