HEADER HYDROLASE 04-AUG-04 1U7P TITLE X-RAY CRYSTAL STRUCTURE OF THE HYPOTHETICAL PHOSPHOTYROSINE TITLE 2 PHOSPHATASE MDP-1 OF THE HALOACID DEHALOGENASE SUPERFAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAGNESIUM-DEPENDENT PHOSPHATASE-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: MDP-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: AF230273; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS HAD SUPERFAMILY, PHOSPHORYL TRANSFER, PHOSPHOTYROSINE PHOSPHATASE, KEYWDS 2 ASPARTATE NUCLEOPHILE, ENZYME EVOLUTION, STRUCTURAL ENZYMOLOGY, KEYWDS 3 CLASS III, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.PEISACH,J.D.SELENGUT,D.DUNAWAY-MARIANO,K.N.ALLEN REVDAT 4 03-APR-24 1U7P 1 REMARK REVDAT 3 14-FEB-24 1U7P 1 REMARK LINK REVDAT 2 24-FEB-09 1U7P 1 VERSN REVDAT 1 19-OCT-04 1U7P 0 JRNL AUTH E.PEISACH,J.D.SELENGUT,D.DUNAWAY-MARIANO,K.N.ALLEN JRNL TITL X-RAY CRYSTAL STRUCTURE OF THE HYPOTHETICAL PHOSPHOTYROSINE JRNL TITL 2 PHOSPHATASE MDP-1 OF THE HALOACID DEHALOGENASE SUPERFAMILY JRNL REF BIOCHEMISTRY V. 43 12770 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15461449 JRNL DOI 10.1021/BI0490688 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.D.SELENGUT,R.L.LEVINE REMARK 1 TITL MDP-1: A NOVEL EUKARYOTIC MAGNESIUM-DEPENDENT PHOSPHATASE REMARK 1 REF BIOCHEMISTRY V. 39 8315 2000 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.D.SELENGUT REMARK 1 TITL MDP-1 IS A NEW AND DISTINCT MEMBER OF THE HALOACID REMARK 1 TITL 2 DEHALOGENASE FAMILY OF ASPARTATE-DEPENDENT PHOSPHOHYDROLASES REMARK 1 REF BIOCHEMISTRY V. 40 12704 2001 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.C.MORAIS,W.ZHANG,A.S.BAKER,G.ZHANG,D.DUNAWAY-MARIANO, REMARK 1 AUTH 2 K.N.ALLEN REMARK 1 TITL THE CRYSTAL STRUCTURE OF BACILLUS CEREUS REMARK 1 TITL 2 PHOSPHONOACETALDEHYDE HYDROLASE: INSIGHT INTO CATALYSIS OF REMARK 1 TITL 3 PHOSPHORUS BOND CLEAVAGE AND CATALYTIC DIVERSIFICATION REMARK 1 TITL 4 WITHIN THE HAD ENZYME SUPERFAMILY REMARK 1 REF BIOCHEMISTRY V. 39 10385 2000 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 908245.420 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 43298 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4380 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5754 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 651 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 416 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.70000 REMARK 3 B22 (A**2) : -3.78000 REMARK 3 B33 (A**2) : -5.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.320 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.990 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.120 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.050 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 43.53 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS, NI FILTER REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48167 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 76.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.04850 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: HIGH RESOLUTION MODEL OF MDP-1 WITHOUT MAGNESIUM REMARK 200 BOUND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM ACETATE, PH 8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.82550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LEU B 164 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 GLY D 163 REMARK 465 LEU D 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 15 -54.93 -125.99 REMARK 500 THR A 23 -53.99 -133.56 REMARK 500 LEU B 12 -61.39 -108.04 REMARK 500 TYR B 14 25.56 48.81 REMARK 500 THR B 15 -56.48 -129.09 REMARK 500 THR B 23 -54.83 -133.74 REMARK 500 LEU C 7 125.59 -170.18 REMARK 500 THR C 23 -60.25 -132.84 REMARK 500 ASP C 34 8.29 -67.04 REMARK 500 LEU D 12 -64.27 -105.42 REMARK 500 THR D 15 -56.56 -129.10 REMARK 500 PHE D 19 169.56 179.84 REMARK 500 THR D 23 -68.44 -129.81 REMARK 500 LYS D 100 0.05 -68.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 ASP A 13 O 77.2 REMARK 620 3 ASP A 123 OD1 81.5 82.7 REMARK 620 4 WO4 A 505 O1 91.3 97.9 172.4 REMARK 620 5 HOH A 533 O 94.4 166.4 85.5 92.8 REMARK 620 6 HOH A 564 O 163.0 87.0 90.6 97.0 99.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WO4 A 505 W REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD1 REMARK 620 2 WO4 A 505 O1 74.4 REMARK 620 3 WO4 A 505 O2 67.5 109.3 REMARK 620 4 WO4 A 505 O3 70.3 109.8 109.9 REMARK 620 5 WO4 A 505 O4 175.7 109.5 109.1 109.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 11 OD2 REMARK 620 2 ASP B 13 O 96.3 REMARK 620 3 HOH B 597 O 97.6 90.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 11 OD2 REMARK 620 2 ASP C 13 O 81.5 REMARK 620 3 ASP C 123 OD1 77.3 85.0 REMARK 620 4 WO4 C 506 O3 89.0 93.5 166.3 REMARK 620 5 HOH C 550 O 88.6 166.7 84.3 95.1 REMARK 620 6 HOH C 584 O 167.5 89.1 93.8 99.9 99.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WO4 C 506 W REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 11 OD1 REMARK 620 2 WO4 C 506 O1 70.6 REMARK 620 3 WO4 C 506 O2 175.9 108.9 REMARK 620 4 WO4 C 506 O3 74.8 110.1 109.1 REMARK 620 5 WO4 C 506 O4 68.0 110.2 108.8 109.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 11 OD2 REMARK 620 2 ASP D 13 O 90.1 REMARK 620 3 ASP D 123 N 98.9 120.5 REMARK 620 4 HOH D 562 O 105.6 88.5 142.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WO4 C 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U7O RELATED DB: PDB REMARK 900 STRUCTURE OF MDP-1 WITHOUT MAGNESIUM DBREF 1U7P A 1 164 UNP Q9D967 Q9D967_MOUSE 1 164 DBREF 1U7P B 1 164 UNP Q9D967 Q9D967_MOUSE 1 164 DBREF 1U7P C 1 164 UNP Q9D967 Q9D967_MOUSE 1 164 DBREF 1U7P D 1 164 UNP Q9D967 Q9D967_MOUSE 1 164 SEQRES 1 A 164 MET THR ARG LEU PRO LYS LEU ALA VAL PHE ASP LEU ASP SEQRES 2 A 164 TYR THR LEU TRP PRO PHE TRP VAL ASP THR HIS VAL ASP SEQRES 3 A 164 PRO PRO PHE HIS LYS SER SER ASP GLY THR VAL ARG ASP SEQRES 4 A 164 ARG ARG GLY GLN ASN ILE GLN LEU TYR PRO GLU VAL PRO SEQRES 5 A 164 GLU VAL LEU GLY ARG LEU GLN SER LEU GLY VAL PRO VAL SEQRES 6 A 164 ALA ALA ALA SER ARG THR SER GLU ILE GLN GLY ALA ASN SEQRES 7 A 164 GLN LEU LEU GLU LEU PHE ASP LEU GLY LYS TYR PHE ILE SEQRES 8 A 164 GLN ARG GLU ILE TYR PRO GLY SER LYS VAL THR HIS PHE SEQRES 9 A 164 GLU ARG LEU HIS HIS LYS THR GLY VAL PRO PHE SER GLN SEQRES 10 A 164 MET VAL PHE PHE ASP ASP GLU ASN ARG ASN ILE ILE ASP SEQRES 11 A 164 VAL GLY ARG LEU GLY VAL THR CYS ILE HIS ILE ARG ASP SEQRES 12 A 164 GLY MET SER LEU GLN THR LEU THR GLN GLY LEU GLU THR SEQRES 13 A 164 PHE ALA LYS ALA GLN ALA GLY LEU SEQRES 1 B 164 MET THR ARG LEU PRO LYS LEU ALA VAL PHE ASP LEU ASP SEQRES 2 B 164 TYR THR LEU TRP PRO PHE TRP VAL ASP THR HIS VAL ASP SEQRES 3 B 164 PRO PRO PHE HIS LYS SER SER ASP GLY THR VAL ARG ASP SEQRES 4 B 164 ARG ARG GLY GLN ASN ILE GLN LEU TYR PRO GLU VAL PRO SEQRES 5 B 164 GLU VAL LEU GLY ARG LEU GLN SER LEU GLY VAL PRO VAL SEQRES 6 B 164 ALA ALA ALA SER ARG THR SER GLU ILE GLN GLY ALA ASN SEQRES 7 B 164 GLN LEU LEU GLU LEU PHE ASP LEU GLY LYS TYR PHE ILE SEQRES 8 B 164 GLN ARG GLU ILE TYR PRO GLY SER LYS VAL THR HIS PHE SEQRES 9 B 164 GLU ARG LEU HIS HIS LYS THR GLY VAL PRO PHE SER GLN SEQRES 10 B 164 MET VAL PHE PHE ASP ASP GLU ASN ARG ASN ILE ILE ASP SEQRES 11 B 164 VAL GLY ARG LEU GLY VAL THR CYS ILE HIS ILE ARG ASP SEQRES 12 B 164 GLY MET SER LEU GLN THR LEU THR GLN GLY LEU GLU THR SEQRES 13 B 164 PHE ALA LYS ALA GLN ALA GLY LEU SEQRES 1 C 164 MET THR ARG LEU PRO LYS LEU ALA VAL PHE ASP LEU ASP SEQRES 2 C 164 TYR THR LEU TRP PRO PHE TRP VAL ASP THR HIS VAL ASP SEQRES 3 C 164 PRO PRO PHE HIS LYS SER SER ASP GLY THR VAL ARG ASP SEQRES 4 C 164 ARG ARG GLY GLN ASN ILE GLN LEU TYR PRO GLU VAL PRO SEQRES 5 C 164 GLU VAL LEU GLY ARG LEU GLN SER LEU GLY VAL PRO VAL SEQRES 6 C 164 ALA ALA ALA SER ARG THR SER GLU ILE GLN GLY ALA ASN SEQRES 7 C 164 GLN LEU LEU GLU LEU PHE ASP LEU GLY LYS TYR PHE ILE SEQRES 8 C 164 GLN ARG GLU ILE TYR PRO GLY SER LYS VAL THR HIS PHE SEQRES 9 C 164 GLU ARG LEU HIS HIS LYS THR GLY VAL PRO PHE SER GLN SEQRES 10 C 164 MET VAL PHE PHE ASP ASP GLU ASN ARG ASN ILE ILE ASP SEQRES 11 C 164 VAL GLY ARG LEU GLY VAL THR CYS ILE HIS ILE ARG ASP SEQRES 12 C 164 GLY MET SER LEU GLN THR LEU THR GLN GLY LEU GLU THR SEQRES 13 C 164 PHE ALA LYS ALA GLN ALA GLY LEU SEQRES 1 D 164 MET THR ARG LEU PRO LYS LEU ALA VAL PHE ASP LEU ASP SEQRES 2 D 164 TYR THR LEU TRP PRO PHE TRP VAL ASP THR HIS VAL ASP SEQRES 3 D 164 PRO PRO PHE HIS LYS SER SER ASP GLY THR VAL ARG ASP SEQRES 4 D 164 ARG ARG GLY GLN ASN ILE GLN LEU TYR PRO GLU VAL PRO SEQRES 5 D 164 GLU VAL LEU GLY ARG LEU GLN SER LEU GLY VAL PRO VAL SEQRES 6 D 164 ALA ALA ALA SER ARG THR SER GLU ILE GLN GLY ALA ASN SEQRES 7 D 164 GLN LEU LEU GLU LEU PHE ASP LEU GLY LYS TYR PHE ILE SEQRES 8 D 164 GLN ARG GLU ILE TYR PRO GLY SER LYS VAL THR HIS PHE SEQRES 9 D 164 GLU ARG LEU HIS HIS LYS THR GLY VAL PRO PHE SER GLN SEQRES 10 D 164 MET VAL PHE PHE ASP ASP GLU ASN ARG ASN ILE ILE ASP SEQRES 11 D 164 VAL GLY ARG LEU GLY VAL THR CYS ILE HIS ILE ARG ASP SEQRES 12 D 164 GLY MET SER LEU GLN THR LEU THR GLN GLY LEU GLU THR SEQRES 13 D 164 PHE ALA LYS ALA GLN ALA GLY LEU HET MG A 501 1 HET WO4 A 505 5 HET MG B 502 1 HET MG C 503 1 HET WO4 C 506 5 HET MG D 504 1 HETNAM MG MAGNESIUM ION HETNAM WO4 TUNGSTATE(VI)ION FORMUL 5 MG 4(MG 2+) FORMUL 6 WO4 2(O4 W 2-) FORMUL 11 HOH *416(H2 O) HELIX 1 1 GLU A 50 LEU A 61 1 12 HELIX 2 2 GLU A 73 PHE A 84 1 12 HELIX 3 3 LEU A 86 PHE A 90 5 5 HELIX 4 4 SER A 99 GLY A 112 1 14 HELIX 5 5 PRO A 114 SER A 116 5 3 HELIX 6 6 GLU A 124 ARG A 133 1 10 HELIX 7 7 SER A 146 GLN A 161 1 16 HELIX 8 8 GLU B 50 GLY B 62 1 13 HELIX 9 9 GLU B 73 PHE B 84 1 12 HELIX 10 10 LEU B 86 PHE B 90 5 5 HELIX 11 11 SER B 99 GLY B 112 1 14 HELIX 12 12 PRO B 114 SER B 116 5 3 HELIX 13 13 GLU B 124 ARG B 133 1 10 HELIX 14 14 SER B 146 GLY B 163 1 18 HELIX 15 15 GLU C 50 GLY C 62 1 13 HELIX 16 16 GLU C 73 PHE C 84 1 12 HELIX 17 17 LEU C 86 LYS C 88 5 3 HELIX 18 18 SER C 99 GLY C 112 1 14 HELIX 19 19 PRO C 114 SER C 116 5 3 HELIX 20 20 GLU C 124 ARG C 133 1 10 HELIX 21 21 SER C 146 GLN C 161 1 16 HELIX 22 22 GLU D 50 LEU D 61 1 12 HELIX 23 23 GLU D 73 PHE D 84 1 12 HELIX 24 24 LEU D 86 PHE D 90 5 5 HELIX 25 25 SER D 99 GLY D 112 1 14 HELIX 26 26 PRO D 114 SER D 116 5 3 HELIX 27 27 GLU D 124 ARG D 133 1 10 HELIX 28 28 SER D 146 ALA D 162 1 17 SHEET 1 A 5 GLN A 92 ILE A 95 0 SHEET 2 A 5 VAL A 65 SER A 69 1 N SER A 69 O GLU A 94 SHEET 3 A 5 LEU A 7 PHE A 10 1 N PHE A 10 O ALA A 66 SHEET 4 A 5 MET A 118 ASP A 122 1 O VAL A 119 N VAL A 9 SHEET 5 A 5 THR A 137 HIS A 140 1 O ILE A 139 N PHE A 120 SHEET 1 B 3 PHE A 29 LYS A 31 0 SHEET 2 B 3 VAL A 37 ASP A 39 -1 O ARG A 38 N HIS A 30 SHEET 3 B 3 ASN A 44 ILE A 45 -1 O ILE A 45 N VAL A 37 SHEET 1 C 5 GLN B 92 ILE B 95 0 SHEET 2 C 5 VAL B 65 SER B 69 1 N ALA B 67 O GLU B 94 SHEET 3 C 5 LEU B 7 PHE B 10 1 N PHE B 10 O ALA B 68 SHEET 4 C 5 MET B 118 ASP B 122 1 O VAL B 119 N VAL B 9 SHEET 5 C 5 THR B 137 HIS B 140 1 O ILE B 139 N PHE B 120 SHEET 1 D 3 HIS B 30 LYS B 31 0 SHEET 2 D 3 VAL B 37 ARG B 38 -1 O ARG B 38 N HIS B 30 SHEET 3 D 3 ASN B 44 ILE B 45 -1 O ILE B 45 N VAL B 37 SHEET 1 E 5 PHE C 90 ILE C 95 0 SHEET 2 E 5 VAL C 65 SER C 69 1 N SER C 69 O GLU C 94 SHEET 3 E 5 LEU C 7 PHE C 10 1 N PHE C 10 O ALA C 66 SHEET 4 E 5 MET C 118 ASP C 122 1 O PHE C 121 N VAL C 9 SHEET 5 E 5 THR C 137 HIS C 140 1 O ILE C 139 N PHE C 120 SHEET 1 F 3 HIS C 30 LYS C 31 0 SHEET 2 F 3 VAL C 37 ARG C 38 -1 O ARG C 38 N HIS C 30 SHEET 3 F 3 ASN C 44 ILE C 45 -1 O ILE C 45 N VAL C 37 SHEET 1 G 5 GLN D 92 ILE D 95 0 SHEET 2 G 5 VAL D 65 SER D 69 1 N ALA D 67 O GLU D 94 SHEET 3 G 5 LEU D 7 PHE D 10 1 N PHE D 10 O ALA D 68 SHEET 4 G 5 MET D 118 ASP D 122 1 O VAL D 119 N VAL D 9 SHEET 5 G 5 THR D 137 HIS D 140 1 O ILE D 139 N PHE D 120 SHEET 1 H 3 HIS D 30 LYS D 31 0 SHEET 2 H 3 VAL D 37 ARG D 38 -1 O ARG D 38 N HIS D 30 SHEET 3 H 3 ASN D 44 ILE D 45 -1 O ILE D 45 N VAL D 37 LINK OD2 ASP A 11 MG MG A 501 1555 1555 2.24 LINK OD1 ASP A 11 W WO4 A 505 1555 1555 2.84 LINK O ASP A 13 MG MG A 501 1555 1555 2.27 LINK OD1 ASP A 123 MG MG A 501 1555 1555 2.26 LINK MG MG A 501 O1 WO4 A 505 1555 1555 2.65 LINK MG MG A 501 O HOH A 533 1555 1555 2.27 LINK MG MG A 501 O HOH A 564 1555 1555 2.34 LINK OD2 ASP B 11 MG MG B 502 1555 1555 2.45 LINK O ASP B 13 MG MG B 502 1555 1555 2.55 LINK MG MG B 502 O HOH B 597 1555 1555 2.49 LINK OD2 ASP C 11 MG MG C 503 1555 1555 2.26 LINK OD1 ASP C 11 W WO4 C 506 1555 1555 2.70 LINK O ASP C 13 MG MG C 503 1555 1555 2.26 LINK OD1 ASP C 123 MG MG C 503 1555 1555 2.21 LINK MG MG C 503 O3 WO4 C 506 1555 1555 2.51 LINK MG MG C 503 O HOH C 550 1555 1555 2.33 LINK MG MG C 503 O HOH C 584 1555 1555 2.26 LINK OD2 ASP D 11 MG MG D 504 1555 1555 2.30 LINK O ASP D 13 MG MG D 504 1555 1555 2.65 LINK N ASP D 123 MG MG D 504 1555 1555 3.12 LINK MG MG D 504 O HOH D 562 1555 1555 2.50 CISPEP 1 PRO A 27 PRO A 28 0 0.09 CISPEP 2 PRO B 27 PRO B 28 0 -0.02 CISPEP 3 PRO C 27 PRO C 28 0 -0.12 CISPEP 4 PRO D 27 PRO D 28 0 0.00 SITE 1 AC1 6 ASP A 11 ASP A 13 ASP A 123 WO4 A 505 SITE 2 AC1 6 HOH A 533 HOH A 564 SITE 1 AC2 6 ASP B 11 ASP B 13 THR B 15 ASP B 122 SITE 2 AC2 6 ASP B 123 HOH B 597 SITE 1 AC3 6 ASP C 11 ASP C 13 ASP C 123 WO4 C 506 SITE 2 AC3 6 HOH C 550 HOH C 584 SITE 1 AC4 5 ASP D 11 ASP D 13 ASP D 122 ASP D 123 SITE 2 AC4 5 HOH D 562 SITE 1 AC5 9 ASP A 11 LEU A 12 ASP A 13 SER A 69 SITE 2 AC5 9 ARG A 70 THR A 71 LYS A 100 MG A 501 SITE 3 AC5 9 HOH A 571 SITE 1 AC6 9 ASP C 11 LEU C 12 ASP C 13 SER C 69 SITE 2 AC6 9 ARG C 70 THR C 71 LYS C 100 MG C 503 SITE 3 AC6 9 HOH C 560 CRYST1 68.524 57.651 76.621 90.00 91.97 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014593 0.000000 0.000503 0.00000 SCALE2 0.000000 0.017346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013059 0.00000