HEADER LIGASE 04-AUG-04 1U7W TITLE PHOSPHOPANTOTHENOYLCYSTEINE SYNTHETASE FROM E. COLI, CTP-COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: COENZYME A BIOSYNTHESIS BIFUNCTIONAL PROTEIN COABC; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: PHOSPHOPANTOTHENOYLCYSTEINE SYNTHETASE(RESIDUES 181-406); COMPND 5 EC: 6.3.2.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COENZYME A BIOSYNTHESIS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.STANITZEK,M.A.AUGUSTIN,R.HUBER,T.KUPKE,S.STEINBACHER REVDAT 4 25-OCT-23 1U7W 1 REMARK REVDAT 3 10-NOV-21 1U7W 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1U7W 1 VERSN REVDAT 1 30-NOV-04 1U7W 0 JRNL AUTH S.STANITZEK,M.A.AUGUSTIN,R.HUBER,T.KUPKE,S.STEINBACHER JRNL TITL STRUCTURAL BASIS OF CTP-DEPENDENT PEPTIDE BOND FORMATION IN JRNL TITL 2 COENZYME A BIOSYNTHESIS CATALYZED BY ESCHERICHIA COLI PPC JRNL TITL 3 SYNTHETASE JRNL REF STRUCTURE V. 12 1977 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15530362 JRNL DOI 10.1016/J.STR.2004.08.007 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1592 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.620 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28789 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1U7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3000, PH 6.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.10750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 123.10750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.96300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.20300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.96300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.20300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 123.10750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.96300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.20300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 123.10750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.96300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.20300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 45.92600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 123.10750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 181 REMARK 465 PRO A 182 REMARK 465 ILE A 290 REMARK 465 LYS A 291 REMARK 465 LYS A 292 REMARK 465 GLN A 293 REMARK 465 ALA A 294 REMARK 465 THR A 295 REMARK 465 GLN A 296 REMARK 465 GLY A 297 REMARK 465 SER A 356 REMARK 465 GLN A 357 REMARK 465 PRO A 358 REMARK 465 THR A 359 REMARK 465 GLN A 360 REMARK 465 GLY A 361 REMARK 465 PHE A 362 REMARK 465 ASN A 363 REMARK 465 SER A 364 REMARK 465 ASP A 365 REMARK 465 ASN A 366 REMARK 465 ASN A 367 REMARK 465 ALA A 368 REMARK 465 ARG A 406 REMARK 465 ILE B 290 REMARK 465 LYS B 291 REMARK 465 LYS B 292 REMARK 465 GLN B 293 REMARK 465 ALA B 294 REMARK 465 THR B 295 REMARK 465 GLN B 296 REMARK 465 GLY B 297 REMARK 465 ASP B 298 REMARK 465 ASP B 354 REMARK 465 VAL B 355 REMARK 465 SER B 356 REMARK 465 GLN B 357 REMARK 465 PRO B 358 REMARK 465 THR B 359 REMARK 465 GLN B 360 REMARK 465 GLY B 361 REMARK 465 PHE B 362 REMARK 465 ASN B 363 REMARK 465 SER B 364 REMARK 465 ASP B 365 REMARK 465 ASN B 366 REMARK 465 ASN B 367 REMARK 465 LYS C 289 REMARK 465 ILE C 290 REMARK 465 LYS C 291 REMARK 465 LYS C 292 REMARK 465 GLN C 293 REMARK 465 ALA C 294 REMARK 465 THR C 295 REMARK 465 GLN C 296 REMARK 465 GLY C 297 REMARK 465 VAL C 355 REMARK 465 SER C 356 REMARK 465 GLN C 357 REMARK 465 PRO C 358 REMARK 465 THR C 359 REMARK 465 GLN C 360 REMARK 465 GLY C 361 REMARK 465 PHE C 362 REMARK 465 ASN C 363 REMARK 465 SER C 364 REMARK 465 ASP C 365 REMARK 465 ASN C 366 REMARK 465 ARG C 406 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP C 210 O HOH C 97 2.14 REMARK 500 O TYR B 323 O HOH B 156 2.15 REMARK 500 O VAL C 234 O HOH C 71 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 203 -174.62 166.47 REMARK 500 SER A 212 134.93 -170.45 REMARK 500 ALA A 229 170.26 -58.59 REMARK 500 SER A 239 49.27 -105.65 REMARK 500 LEU A 300 144.45 -175.86 REMARK 500 ASN A 333 74.95 47.56 REMARK 500 HIS A 370 114.02 -173.00 REMARK 500 TRP A 373 -152.41 -138.35 REMARK 500 ASN A 404 49.44 -79.59 REMARK 500 SER B 212 135.69 -176.65 REMARK 500 PRO B 237 108.44 -52.76 REMARK 500 SER B 239 69.88 -118.88 REMARK 500 SER B 264 17.81 -157.43 REMARK 500 ASN B 346 41.78 71.77 REMARK 500 PRO B 381 155.48 -47.45 REMARK 500 LEU B 382 171.78 -51.11 REMARK 500 GLU B 383 173.03 160.79 REMARK 500 ARG B 405 -42.51 99.94 REMARK 500 VAL C 183 -143.08 -150.83 REMARK 500 ASP C 185 11.35 -148.76 REMARK 500 ASP C 203 -172.71 -172.77 REMARK 500 SER C 212 147.53 -177.82 REMARK 500 SER C 239 66.79 -105.93 REMARK 500 PHE C 245 21.45 83.95 REMARK 500 ALA C 275 138.88 -33.80 REMARK 500 ALA C 276 58.12 -92.11 REMARK 500 LEU C 300 -75.24 -147.73 REMARK 500 THR C 301 106.44 85.97 REMARK 500 HIS C 320 38.99 72.14 REMARK 500 VAL C 334 -77.91 -44.98 REMARK 500 ASP C 377 142.57 177.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 279 OD1 REMARK 620 2 ASP A 279 OD2 49.4 REMARK 620 3 CTP A 500 O1A 133.3 163.0 REMARK 620 4 CTP A 500 O2B 71.2 96.1 72.7 REMARK 620 5 CTP A 500 O1G 94.1 62.8 100.8 70.4 REMARK 620 6 HOH A2502 O 123.3 84.9 100.7 157.9 90.8 REMARK 620 7 HOH A2503 O 79.2 112.4 83.4 106.2 173.2 93.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 279 OD2 REMARK 620 2 ASP B 279 OD1 48.7 REMARK 620 3 CTP B1500 O1A 175.0 126.3 REMARK 620 4 CTP B1500 O2B 110.5 72.4 65.3 REMARK 620 5 CTP B1500 O1G 101.9 118.4 79.7 73.6 REMARK 620 6 CTP B1500 O3G 71.1 70.4 107.2 55.0 48.1 REMARK 620 7 HOH B2504 O 84.5 120.5 99.8 165.1 103.6 133.8 REMARK 620 8 HOH B2505 O 92.9 77.5 86.3 109.0 163.1 147.2 69.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C2501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 279 OD1 REMARK 620 2 ASP C 279 OD2 52.0 REMARK 620 3 CTP C2500 O1A 134.2 166.6 REMARK 620 4 CTP C2500 O2B 85.4 106.2 65.9 REMARK 620 5 CTP C2500 O1G 95.0 63.4 103.2 65.1 REMARK 620 6 CTP C2500 O2G 142.4 104.1 63.8 73.5 48.0 REMARK 620 7 HOH C2506 O 110.4 78.7 105.7 161.9 103.6 88.5 REMARK 620 8 HOH C2507 O 77.7 109.8 83.6 115.7 172.4 139.5 77.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 2501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP B 1500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP C 2500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U7U RELATED DB: PDB REMARK 900 THE SAME PROTEIN, APO REMARK 900 RELATED ID: 1U7Z RELATED DB: PDB REMARK 900 THE SAME PROTEIN, 4'-PHOSPHOPANTOTHENOYL-CMP COMPLEX REMARK 900 RELATED ID: 1U80 RELATED DB: PDB REMARK 900 THE SAME PROTEIN, CMP COMPLEX DBREF 1U7W A 181 406 UNP P0ABQ0 COABC_ECOLI 180 405 DBREF 1U7W B 181 406 UNP P0ABQ0 COABC_ECOLI 180 405 DBREF 1U7W C 181 406 UNP P0ABQ0 COABC_ECOLI 180 405 SEQADV 1U7W ASP A 210 UNP P0ABQ0 ASN 209 ENGINEERED MUTATION SEQADV 1U7W ASP B 210 UNP P0ABQ0 ASN 209 ENGINEERED MUTATION SEQADV 1U7W ASP C 210 UNP P0ABQ0 ASN 209 ENGINEERED MUTATION SEQRES 1 A 226 SER PRO VAL ASN ASP LEU LYS HIS LEU ASN ILE MET ILE SEQRES 2 A 226 THR ALA GLY PRO THR ARG GLU PRO LEU ASP PRO VAL ARG SEQRES 3 A 226 TYR ILE SER ASP HIS SER SER GLY LYS MET GLY PHE ALA SEQRES 4 A 226 ILE ALA ALA ALA ALA ALA ARG ARG GLY ALA ASN VAL THR SEQRES 5 A 226 LEU VAL SER GLY PRO VAL SER LEU PRO THR PRO PRO PHE SEQRES 6 A 226 VAL LYS ARG VAL ASP VAL MET THR ALA LEU GLU MET GLU SEQRES 7 A 226 ALA ALA VAL ASN ALA SER VAL GLN GLN GLN ASN ILE PHE SEQRES 8 A 226 ILE GLY CYS ALA ALA VAL ALA ASP TYR ARG ALA ALA THR SEQRES 9 A 226 VAL ALA PRO GLU LYS ILE LYS LYS GLN ALA THR GLN GLY SEQRES 10 A 226 ASP GLU LEU THR ILE LYS MET VAL LYS ASN PRO ASP ILE SEQRES 11 A 226 VAL ALA GLY VAL ALA ALA LEU LYS ASP HIS ARG PRO TYR SEQRES 12 A 226 VAL VAL GLY PHE ALA ALA GLU THR ASN ASN VAL GLU GLU SEQRES 13 A 226 TYR ALA ARG GLN LYS ARG ILE ARG LYS ASN LEU ASP LEU SEQRES 14 A 226 ILE CYS ALA ASN ASP VAL SER GLN PRO THR GLN GLY PHE SEQRES 15 A 226 ASN SER ASP ASN ASN ALA LEU HIS LEU PHE TRP GLN ASP SEQRES 16 A 226 GLY ASP LYS VAL LEU PRO LEU GLU ARG LYS GLU LEU LEU SEQRES 17 A 226 GLY GLN LEU LEU LEU ASP GLU ILE VAL THR ARG TYR ASP SEQRES 18 A 226 GLU LYS ASN ARG ARG SEQRES 1 B 226 SER PRO VAL ASN ASP LEU LYS HIS LEU ASN ILE MET ILE SEQRES 2 B 226 THR ALA GLY PRO THR ARG GLU PRO LEU ASP PRO VAL ARG SEQRES 3 B 226 TYR ILE SER ASP HIS SER SER GLY LYS MET GLY PHE ALA SEQRES 4 B 226 ILE ALA ALA ALA ALA ALA ARG ARG GLY ALA ASN VAL THR SEQRES 5 B 226 LEU VAL SER GLY PRO VAL SER LEU PRO THR PRO PRO PHE SEQRES 6 B 226 VAL LYS ARG VAL ASP VAL MET THR ALA LEU GLU MET GLU SEQRES 7 B 226 ALA ALA VAL ASN ALA SER VAL GLN GLN GLN ASN ILE PHE SEQRES 8 B 226 ILE GLY CYS ALA ALA VAL ALA ASP TYR ARG ALA ALA THR SEQRES 9 B 226 VAL ALA PRO GLU LYS ILE LYS LYS GLN ALA THR GLN GLY SEQRES 10 B 226 ASP GLU LEU THR ILE LYS MET VAL LYS ASN PRO ASP ILE SEQRES 11 B 226 VAL ALA GLY VAL ALA ALA LEU LYS ASP HIS ARG PRO TYR SEQRES 12 B 226 VAL VAL GLY PHE ALA ALA GLU THR ASN ASN VAL GLU GLU SEQRES 13 B 226 TYR ALA ARG GLN LYS ARG ILE ARG LYS ASN LEU ASP LEU SEQRES 14 B 226 ILE CYS ALA ASN ASP VAL SER GLN PRO THR GLN GLY PHE SEQRES 15 B 226 ASN SER ASP ASN ASN ALA LEU HIS LEU PHE TRP GLN ASP SEQRES 16 B 226 GLY ASP LYS VAL LEU PRO LEU GLU ARG LYS GLU LEU LEU SEQRES 17 B 226 GLY GLN LEU LEU LEU ASP GLU ILE VAL THR ARG TYR ASP SEQRES 18 B 226 GLU LYS ASN ARG ARG SEQRES 1 C 226 SER PRO VAL ASN ASP LEU LYS HIS LEU ASN ILE MET ILE SEQRES 2 C 226 THR ALA GLY PRO THR ARG GLU PRO LEU ASP PRO VAL ARG SEQRES 3 C 226 TYR ILE SER ASP HIS SER SER GLY LYS MET GLY PHE ALA SEQRES 4 C 226 ILE ALA ALA ALA ALA ALA ARG ARG GLY ALA ASN VAL THR SEQRES 5 C 226 LEU VAL SER GLY PRO VAL SER LEU PRO THR PRO PRO PHE SEQRES 6 C 226 VAL LYS ARG VAL ASP VAL MET THR ALA LEU GLU MET GLU SEQRES 7 C 226 ALA ALA VAL ASN ALA SER VAL GLN GLN GLN ASN ILE PHE SEQRES 8 C 226 ILE GLY CYS ALA ALA VAL ALA ASP TYR ARG ALA ALA THR SEQRES 9 C 226 VAL ALA PRO GLU LYS ILE LYS LYS GLN ALA THR GLN GLY SEQRES 10 C 226 ASP GLU LEU THR ILE LYS MET VAL LYS ASN PRO ASP ILE SEQRES 11 C 226 VAL ALA GLY VAL ALA ALA LEU LYS ASP HIS ARG PRO TYR SEQRES 12 C 226 VAL VAL GLY PHE ALA ALA GLU THR ASN ASN VAL GLU GLU SEQRES 13 C 226 TYR ALA ARG GLN LYS ARG ILE ARG LYS ASN LEU ASP LEU SEQRES 14 C 226 ILE CYS ALA ASN ASP VAL SER GLN PRO THR GLN GLY PHE SEQRES 15 C 226 ASN SER ASP ASN ASN ALA LEU HIS LEU PHE TRP GLN ASP SEQRES 16 C 226 GLY ASP LYS VAL LEU PRO LEU GLU ARG LYS GLU LEU LEU SEQRES 17 C 226 GLY GLN LEU LEU LEU ASP GLU ILE VAL THR ARG TYR ASP SEQRES 18 C 226 GLU LYS ASN ARG ARG HET CA A 501 1 HET CTP A 500 29 HET CA B1501 1 HET CTP B1500 29 HET CA C2501 1 HET CTP C2500 29 HETNAM CA CALCIUM ION HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE FORMUL 4 CA 3(CA 2+) FORMUL 5 CTP 3(C9 H16 N3 O14 P3) FORMUL 10 HOH *165(H2 O) HELIX 1 1 GLY A 214 ARG A 227 1 14 HELIX 2 2 THR A 253 VAL A 265 1 13 HELIX 3 3 GLN A 266 GLN A 268 5 3 HELIX 4 4 ASP A 309 ALA A 316 1 8 HELIX 5 5 ASN A 333 ASN A 346 1 14 HELIX 6 6 ARG A 384 ASN A 404 1 21 HELIX 7 7 GLY B 214 ARG B 226 1 13 HELIX 8 8 THR B 253 ALA B 263 1 11 HELIX 9 9 SER B 264 GLN B 268 5 5 HELIX 10 10 ASP B 309 LEU B 317 1 9 HELIX 11 11 ASN B 333 ASN B 346 1 14 HELIX 12 12 ARG B 384 ARG B 405 1 22 HELIX 13 13 GLY C 214 ARG C 227 1 14 HELIX 14 14 THR C 253 VAL C 265 1 13 HELIX 15 15 GLN C 266 GLN C 268 5 3 HELIX 16 16 ASP C 309 ALA C 316 1 8 HELIX 17 17 ASN C 333 ASN C 346 1 14 HELIX 18 18 ARG C 384 ASN C 404 1 21 SHEET 1 A 8 LYS A 247 ASP A 250 0 SHEET 2 A 8 ASN A 230 SER A 235 1 N LEU A 233 O LYS A 247 SHEET 3 A 8 ASN A 190 ALA A 195 1 N ILE A 193 O VAL A 234 SHEET 4 A 8 ILE A 270 GLY A 273 1 O ILE A 272 N THR A 194 SHEET 5 A 8 TYR A 323 GLU A 330 1 O VAL A 325 N GLY A 273 SHEET 6 A 8 LEU A 349 ASP A 354 1 O CYS A 351 N ALA A 328 SHEET 7 A 8 HIS A 370 PHE A 372 -1 O HIS A 370 N ALA A 352 SHEET 8 A 8 ASP A 377 LYS A 378 -1 O LYS A 378 N LEU A 371 SHEET 1 B 4 GLU A 200 PRO A 201 0 SHEET 2 B 4 ARG A 206 ASP A 210 -1 O ILE A 208 N GLU A 200 SHEET 3 B 4 ARG B 206 ASP B 210 -1 O TYR B 207 N SER A 209 SHEET 4 B 4 GLU B 200 PRO B 201 -1 N GLU B 200 O ILE B 208 SHEET 1 C 4 TYR A 280 ALA A 282 0 SHEET 2 C 4 GLU A 299 LYS A 306 -1 O VAL A 305 N ARG A 281 SHEET 3 C 4 LEU B 300 LYS B 306 -1 O MET B 304 N LEU A 300 SHEET 4 C 4 TYR B 280 ALA B 282 -1 N ARG B 281 O VAL B 305 SHEET 1 D 8 VAL B 246 ASP B 250 0 SHEET 2 D 8 ASN B 230 SER B 235 1 N LEU B 233 O LYS B 247 SHEET 3 D 8 ASN B 190 ALA B 195 1 N ILE B 191 O THR B 232 SHEET 4 D 8 ILE B 270 GLY B 273 1 O ILE B 270 N MET B 192 SHEET 5 D 8 TYR B 323 ALA B 329 1 O TYR B 323 N PHE B 271 SHEET 6 D 8 LEU B 349 ASN B 353 1 O LEU B 349 N GLY B 326 SHEET 7 D 8 LEU B 369 TRP B 373 -1 O HIS B 370 N ALA B 352 SHEET 8 D 8 ASP B 377 LEU B 380 -1 O LYS B 378 N LEU B 371 SHEET 1 E 8 LYS C 247 ASP C 250 0 SHEET 2 E 8 ASN C 230 SER C 235 1 N LEU C 233 O LYS C 247 SHEET 3 E 8 ASN C 190 ALA C 195 1 N ILE C 191 O ASN C 230 SHEET 4 E 8 ILE C 270 GLY C 273 1 O ILE C 270 N MET C 192 SHEET 5 E 8 TYR C 323 ALA C 329 1 O VAL C 325 N PHE C 271 SHEET 6 E 8 LEU C 349 ASN C 353 1 O LEU C 349 N GLY C 326 SHEET 7 E 8 HIS C 370 TRP C 373 -1 O HIS C 370 N ALA C 352 SHEET 8 E 8 ASP C 377 VAL C 379 -1 O LYS C 378 N LEU C 371 SHEET 1 F 2 GLU C 200 PRO C 201 0 SHEET 2 F 2 TYR C 207 ILE C 208 -1 O ILE C 208 N GLU C 200 SHEET 1 G 2 TYR C 280 ALA C 282 0 SHEET 2 G 2 MET C 304 LYS C 306 -1 O VAL C 305 N ARG C 281 LINK OD1 ASP A 279 CA CA A 501 1555 1555 2.84 LINK OD2 ASP A 279 CA CA A 501 1555 1555 2.10 LINK O1A CTP A 500 CA CA A 501 1555 1555 2.14 LINK O2B CTP A 500 CA CA A 501 1555 1555 2.12 LINK O1G CTP A 500 CA CA A 501 1555 1555 2.97 LINK CA CA A 501 O HOH A2502 1555 1555 2.09 LINK CA CA A 501 O HOH A2503 1555 1555 2.13 LINK OD2 ASP B 279 CA CA B1501 1555 1555 2.13 LINK OD1 ASP B 279 CA CA B1501 1555 1555 2.94 LINK O1A CTP B1500 CA CA B1501 1555 1555 2.14 LINK O2B CTP B1500 CA CA B1501 1555 1555 2.12 LINK O1G CTP B1500 CA CA B1501 1555 1555 3.01 LINK O3G CTP B1500 CA CA B1501 1555 1555 3.29 LINK CA CA B1501 O HOH B2504 1555 1555 2.11 LINK CA CA B1501 O HOH B2505 1555 1555 2.11 LINK OD1 ASP C 279 CA CA C2501 1555 1555 2.73 LINK OD2 ASP C 279 CA CA C2501 1555 1555 2.14 LINK O1A CTP C2500 CA CA C2501 1555 1555 2.14 LINK O2B CTP C2500 CA CA C2501 1555 1555 2.16 LINK O1G CTP C2500 CA CA C2501 1555 1555 3.01 LINK O2G CTP C2500 CA CA C2501 1555 1555 3.26 LINK CA CA C2501 O HOH C2506 1555 1555 2.11 LINK CA CA C2501 O HOH C2507 1555 1555 2.11 SITE 1 AC1 4 ASP A 279 CTP A 500 HOH A2502 HOH A2503 SITE 1 AC2 5 LYS A 289 ASP B 279 CTP B1500 HOH B2504 SITE 2 AC2 5 HOH B2505 SITE 1 AC3 4 ASP C 279 CTP C2500 HOH C2506 HOH C2507 SITE 1 AC4 16 HOH A 32 GLY A 273 ALA A 275 VAL A 277 SITE 2 AC4 16 ASP A 279 PRO A 308 ASP A 309 ILE A 310 SITE 3 AC4 16 VAL A 311 GLY A 326 PHE A 327 LYS A 341 SITE 4 AC4 16 LYS A 345 CA A 501 HOH A2503 LYS B 289 SITE 1 AC5 17 LYS A 289 HOH B 126 HOH B 138 GLY B 273 SITE 2 AC5 17 ALA B 275 VAL B 277 ASP B 279 PRO B 308 SITE 3 AC5 17 ASP B 309 ILE B 310 VAL B 311 GLY B 326 SITE 4 AC5 17 PHE B 327 LYS B 341 LYS B 345 CA B1501 SITE 5 AC5 17 HOH B2505 SITE 1 AC6 15 HOH C 68 HOH C 118 GLY C 273 ALA C 275 SITE 2 AC6 15 VAL C 277 ASP C 279 PRO C 308 ASP C 309 SITE 3 AC6 15 ILE C 310 VAL C 311 PHE C 327 LYS C 341 SITE 4 AC6 15 LYS C 345 CA C2501 HOH C2507 CRYST1 45.926 144.406 246.215 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021774 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004061 0.00000