HEADER SIGNALING PROTEIN 06-AUG-04 1U8T TITLE CRYSTAL STRUCTURE OF CHEY D13K Y106W ALONE AND IN COMPLEX WITH A FLIM TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHEMOTAXIS PROTEIN CHEY; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FLAGELLAR MOTOR SWITCH PROTEIN FLIM; COMPND 8 CHAIN: E, F; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CHEY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: PREPARED USING SOLID-STATE SYNTHESIS KEYWDS CHEY, FLIM, (BETA/ALPHA)5, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.M.DYER,M.L.QUILLIN,A.CAMPOS,J.LU,M.M.MCEVOY,A.C.HAUSRATH, AUTHOR 2 E.M.WESTBROOK,P.MATSUMURA,B.W.MATTHEWS,F.W.DAHLQUIST REVDAT 4 20-OCT-21 1U8T 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1U8T 1 VERSN REVDAT 2 12-OCT-04 1U8T 1 CRYST1 SCALE1 SCALE2 SCALE3 REVDAT 1 05-OCT-04 1U8T 0 JRNL AUTH C.M.DYER,M.L.QUILLIN,A.CAMPOS,J.LU,M.M.MCEVOY,A.C.HAUSRATH, JRNL AUTH 2 E.M.WESTBROOK,P.MATSUMURA,B.W.MATTHEWS,F.W.DAHLQUIST JRNL TITL STRUCTURE OF THE CONSTITUTIVELY ACTIVE DOUBLE MUTANT JRNL TITL 2 CHEY(D13K Y106W) ALONE AND IN COMPLEX WITH A FLIM PEPTIDE JRNL REF J.MOL.BIOL. V. 342 1325 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15351654 JRNL DOI 10.1016/J.JMB.2004.07.084 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 63072 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3354 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2000 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 66426 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4096 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 568 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 26.000 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.004 ; 0.800 ; 4183 REMARK 3 BOND ANGLES (DEGREES) : 1.325 ; 1.300 ; 5617 REMARK 3 TORSION ANGLES (DEGREES) : 16.070; 0.000 ; 2577 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.003 ; 2.000 ; 127 REMARK 3 GENERAL PLANES (A) : 0.007 ; 5.000 ; 585 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 3.411 ; 0.300 ; 4066 REMARK 3 NON-BONDED CONTACTS (A) : 0.028 ; 7.000 ; 108 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS AND KRETSINGER REMARK 3 KSOL : 0.83 REMARK 3 BSOL : 125.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT BCORREL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.90 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98397,0.97938,0.97925, 0.97239 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71506 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 13.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, AMMONIUM SULFATE, TRIS, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K, PH 7.90 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 127 REMARK 465 GLY A 128 REMARK 465 MET E 1 REMARK 465 GLY E 2 REMARK 465 ASP E 3 REMARK 465 MET F 1 REMARK 465 GLY F 2 REMARK 465 ASP F 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 126 C O CB CG CD CE NZ REMARK 470 MSE A 129 N CA C O CB CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN D 47 O HOH A 257 1564 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 57 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP B 38 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP B 41 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP B 57 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 57 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 75 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP C 3 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP C 12 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP C 57 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP C 57 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP C 64 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP C 75 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP D 41 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP D 57 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP D 64 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP D 75 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP E 12 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP E 12 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP F 12 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 58 -64.94 -92.05 REMARK 500 ASN A 62 -57.72 72.48 REMARK 500 ALA A 90 14.09 -145.76 REMARK 500 GLU A 125 -73.94 -69.41 REMARK 500 TRP B 58 -66.21 -94.28 REMARK 500 ASN B 62 -60.00 73.26 REMARK 500 ALA B 90 15.80 -147.52 REMARK 500 ASN C 62 -57.50 73.46 REMARK 500 MSE C 78 23.76 -141.45 REMARK 500 ASN D 62 -57.11 72.31 REMARK 500 ALA D 90 66.90 -105.76 REMARK 500 LEU F 15 -40.99 -139.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CHY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESCHERICHIA COLI CHEY REMARK 900 RELATED ID: 1FQW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BEF3- ACTIVATED CHEY REMARK 900 RELATED ID: 1F4V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BEF3-ACTIVATED CHEY BOUND TO THE N-TERMINUS OF REMARK 900 FLIM REMARK 900 RELATED ID: 1EHC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CHEY D13K REMARK 900 RELATED ID: 5CHY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CHEY Y106W REMARK 900 RELATED ID: 1D4Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CHEY I95V DBREF 1U8T A 2 129 UNP P06143 CHEY_ECOLI 1 128 DBREF 1U8T B 2 129 UNP P06143 CHEY_ECOLI 1 128 DBREF 1U8T C 2 129 UNP P06143 CHEY_ECOLI 1 128 DBREF 1U8T D 2 129 UNP P06143 CHEY_ECOLI 1 128 DBREF 1U8T E 1 16 UNP P06974 FLIM_ECOLI 1 16 DBREF 1U8T F 1 16 UNP P06974 FLIM_ECOLI 1 16 SEQADV 1U8T LYS A 13 UNP P06143 ASP 12 ENGINEERED MUTATION SEQADV 1U8T MSE A 17 UNP P06143 MET 16 MODIFIED RESIDUE SEQADV 1U8T MSE A 60 UNP P06143 MET 59 MODIFIED RESIDUE SEQADV 1U8T MSE A 63 UNP P06143 MET 62 MODIFIED RESIDUE SEQADV 1U8T MSE A 78 UNP P06143 MET 77 MODIFIED RESIDUE SEQADV 1U8T MSE A 85 UNP P06143 MET 84 MODIFIED RESIDUE SEQADV 1U8T TRP A 106 UNP P06143 TYR 105 ENGINEERED MUTATION SEQADV 1U8T MSE A 129 UNP P06143 MET 128 MODIFIED RESIDUE SEQADV 1U8T LYS B 13 UNP P06143 ASP 12 ENGINEERED MUTATION SEQADV 1U8T MSE B 17 UNP P06143 MET 16 MODIFIED RESIDUE SEQADV 1U8T MSE B 60 UNP P06143 MET 59 MODIFIED RESIDUE SEQADV 1U8T MSE B 63 UNP P06143 MET 62 MODIFIED RESIDUE SEQADV 1U8T MSE B 78 UNP P06143 MET 77 MODIFIED RESIDUE SEQADV 1U8T MSE B 85 UNP P06143 MET 84 MODIFIED RESIDUE SEQADV 1U8T TRP B 106 UNP P06143 TYR 105 ENGINEERED MUTATION SEQADV 1U8T MSE B 129 UNP P06143 MET 128 MODIFIED RESIDUE SEQADV 1U8T LYS C 13 UNP P06143 ASP 12 ENGINEERED MUTATION SEQADV 1U8T MSE C 17 UNP P06143 MET 16 MODIFIED RESIDUE SEQADV 1U8T MSE C 60 UNP P06143 MET 59 MODIFIED RESIDUE SEQADV 1U8T MSE C 63 UNP P06143 MET 62 MODIFIED RESIDUE SEQADV 1U8T MSE C 78 UNP P06143 MET 77 MODIFIED RESIDUE SEQADV 1U8T MSE C 85 UNP P06143 MET 84 MODIFIED RESIDUE SEQADV 1U8T TRP C 106 UNP P06143 TYR 105 ENGINEERED MUTATION SEQADV 1U8T MSE C 129 UNP P06143 MET 128 MODIFIED RESIDUE SEQADV 1U8T LYS D 13 UNP P06143 ASP 12 ENGINEERED MUTATION SEQADV 1U8T MSE D 17 UNP P06143 MET 16 MODIFIED RESIDUE SEQADV 1U8T MSE D 60 UNP P06143 MET 59 MODIFIED RESIDUE SEQADV 1U8T MSE D 63 UNP P06143 MET 62 MODIFIED RESIDUE SEQADV 1U8T MSE D 78 UNP P06143 MET 77 MODIFIED RESIDUE SEQADV 1U8T MSE D 85 UNP P06143 MET 84 MODIFIED RESIDUE SEQADV 1U8T TRP D 106 UNP P06143 TYR 105 ENGINEERED MUTATION SEQADV 1U8T MSE D 129 UNP P06143 MET 128 MODIFIED RESIDUE SEQRES 1 A 128 ALA ASP LYS GLU LEU LYS PHE LEU VAL VAL ASP LYS PHE SEQRES 2 A 128 SER THR MSE ARG ARG ILE VAL ARG ASN LEU LEU LYS GLU SEQRES 3 A 128 LEU GLY PHE ASN ASN VAL GLU GLU ALA GLU ASP GLY VAL SEQRES 4 A 128 ASP ALA LEU ASN LYS LEU GLN ALA GLY GLY TYR GLY PHE SEQRES 5 A 128 VAL ILE SER ASP TRP ASN MSE PRO ASN MSE ASP GLY LEU SEQRES 6 A 128 GLU LEU LEU LYS THR ILE ARG ALA ASP GLY ALA MSE SER SEQRES 7 A 128 ALA LEU PRO VAL LEU MSE VAL THR ALA GLU ALA LYS LYS SEQRES 8 A 128 GLU ASN ILE ILE ALA ALA ALA GLN ALA GLY ALA SER GLY SEQRES 9 A 128 TRP VAL VAL LYS PRO PHE THR ALA ALA THR LEU GLU GLU SEQRES 10 A 128 LYS LEU ASN LYS ILE PHE GLU LYS LEU GLY MSE SEQRES 1 B 128 ALA ASP LYS GLU LEU LYS PHE LEU VAL VAL ASP LYS PHE SEQRES 2 B 128 SER THR MSE ARG ARG ILE VAL ARG ASN LEU LEU LYS GLU SEQRES 3 B 128 LEU GLY PHE ASN ASN VAL GLU GLU ALA GLU ASP GLY VAL SEQRES 4 B 128 ASP ALA LEU ASN LYS LEU GLN ALA GLY GLY TYR GLY PHE SEQRES 5 B 128 VAL ILE SER ASP TRP ASN MSE PRO ASN MSE ASP GLY LEU SEQRES 6 B 128 GLU LEU LEU LYS THR ILE ARG ALA ASP GLY ALA MSE SER SEQRES 7 B 128 ALA LEU PRO VAL LEU MSE VAL THR ALA GLU ALA LYS LYS SEQRES 8 B 128 GLU ASN ILE ILE ALA ALA ALA GLN ALA GLY ALA SER GLY SEQRES 9 B 128 TRP VAL VAL LYS PRO PHE THR ALA ALA THR LEU GLU GLU SEQRES 10 B 128 LYS LEU ASN LYS ILE PHE GLU LYS LEU GLY MSE SEQRES 1 C 128 ALA ASP LYS GLU LEU LYS PHE LEU VAL VAL ASP LYS PHE SEQRES 2 C 128 SER THR MSE ARG ARG ILE VAL ARG ASN LEU LEU LYS GLU SEQRES 3 C 128 LEU GLY PHE ASN ASN VAL GLU GLU ALA GLU ASP GLY VAL SEQRES 4 C 128 ASP ALA LEU ASN LYS LEU GLN ALA GLY GLY TYR GLY PHE SEQRES 5 C 128 VAL ILE SER ASP TRP ASN MSE PRO ASN MSE ASP GLY LEU SEQRES 6 C 128 GLU LEU LEU LYS THR ILE ARG ALA ASP GLY ALA MSE SER SEQRES 7 C 128 ALA LEU PRO VAL LEU MSE VAL THR ALA GLU ALA LYS LYS SEQRES 8 C 128 GLU ASN ILE ILE ALA ALA ALA GLN ALA GLY ALA SER GLY SEQRES 9 C 128 TRP VAL VAL LYS PRO PHE THR ALA ALA THR LEU GLU GLU SEQRES 10 C 128 LYS LEU ASN LYS ILE PHE GLU LYS LEU GLY MSE SEQRES 1 D 128 ALA ASP LYS GLU LEU LYS PHE LEU VAL VAL ASP LYS PHE SEQRES 2 D 128 SER THR MSE ARG ARG ILE VAL ARG ASN LEU LEU LYS GLU SEQRES 3 D 128 LEU GLY PHE ASN ASN VAL GLU GLU ALA GLU ASP GLY VAL SEQRES 4 D 128 ASP ALA LEU ASN LYS LEU GLN ALA GLY GLY TYR GLY PHE SEQRES 5 D 128 VAL ILE SER ASP TRP ASN MSE PRO ASN MSE ASP GLY LEU SEQRES 6 D 128 GLU LEU LEU LYS THR ILE ARG ALA ASP GLY ALA MSE SER SEQRES 7 D 128 ALA LEU PRO VAL LEU MSE VAL THR ALA GLU ALA LYS LYS SEQRES 8 D 128 GLU ASN ILE ILE ALA ALA ALA GLN ALA GLY ALA SER GLY SEQRES 9 D 128 TRP VAL VAL LYS PRO PHE THR ALA ALA THR LEU GLU GLU SEQRES 10 D 128 LYS LEU ASN LYS ILE PHE GLU LYS LEU GLY MSE SEQRES 1 E 16 MET GLY ASP SER ILE LEU SER GLN ALA GLU ILE ASP ALA SEQRES 2 E 16 LEU LEU ASN SEQRES 1 F 16 MET GLY ASP SER ILE LEU SER GLN ALA GLU ILE ASP ALA SEQRES 2 F 16 LEU LEU ASN MODRES 1U8T MSE A 17 MET SELENOMETHIONINE MODRES 1U8T MSE A 60 MET SELENOMETHIONINE MODRES 1U8T MSE A 63 MET SELENOMETHIONINE MODRES 1U8T MSE A 78 MET SELENOMETHIONINE MODRES 1U8T MSE A 85 MET SELENOMETHIONINE MODRES 1U8T MSE A 129 MET SELENOMETHIONINE MODRES 1U8T MSE B 17 MET SELENOMETHIONINE MODRES 1U8T MSE B 60 MET SELENOMETHIONINE MODRES 1U8T MSE B 63 MET SELENOMETHIONINE MODRES 1U8T MSE B 78 MET SELENOMETHIONINE MODRES 1U8T MSE B 85 MET SELENOMETHIONINE MODRES 1U8T MSE B 129 MET SELENOMETHIONINE MODRES 1U8T MSE C 17 MET SELENOMETHIONINE MODRES 1U8T MSE C 60 MET SELENOMETHIONINE MODRES 1U8T MSE C 63 MET SELENOMETHIONINE MODRES 1U8T MSE C 78 MET SELENOMETHIONINE MODRES 1U8T MSE C 85 MET SELENOMETHIONINE MODRES 1U8T MSE C 129 MET SELENOMETHIONINE MODRES 1U8T MSE D 17 MET SELENOMETHIONINE MODRES 1U8T MSE D 60 MET SELENOMETHIONINE MODRES 1U8T MSE D 63 MET SELENOMETHIONINE MODRES 1U8T MSE D 78 MET SELENOMETHIONINE MODRES 1U8T MSE D 85 MET SELENOMETHIONINE MODRES 1U8T MSE D 129 MET SELENOMETHIONINE HET MSE A 17 8 HET MSE A 60 8 HET MSE A 63 8 HET MSE A 78 8 HET MSE A 85 8 HET MSE A 129 2 HET MSE B 17 8 HET MSE B 60 8 HET MSE B 63 8 HET MSE B 78 8 HET MSE B 85 8 HET MSE B 129 9 HET MSE C 17 8 HET MSE C 60 15 HET MSE C 63 8 HET MSE C 78 8 HET MSE C 85 8 HET MSE C 129 9 HET MSE D 17 8 HET MSE D 60 15 HET MSE D 63 8 HET MSE D 78 8 HET MSE D 85 8 HET MSE D 129 9 HET SO4 C 601 5 HET SO4 C 602 5 HET SO4 C 603 5 HET SO4 D 604 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 24(C5 H11 N O2 SE) FORMUL 7 SO4 4(O4 S 2-) FORMUL 11 HOH *568(H2 O) HELIX 1 1 PHE A 14 LEU A 28 1 15 HELIX 2 2 ASP A 38 GLY A 49 1 12 HELIX 3 3 ASP A 64 ASP A 75 1 12 HELIX 4 4 LYS A 91 ALA A 101 1 11 HELIX 5 5 THR A 112 LYS A 126 1 15 HELIX 6 6 PHE B 14 LEU B 28 1 15 HELIX 7 7 ASP B 38 GLY B 49 1 12 HELIX 8 8 ASP B 64 ASP B 75 1 12 HELIX 9 9 LYS B 91 GLY B 102 1 12 HELIX 10 10 THR B 112 LEU B 127 1 16 HELIX 11 11 PHE C 14 LEU C 28 1 15 HELIX 12 12 ASP C 38 GLN C 47 1 10 HELIX 13 13 ASP C 64 ASP C 75 1 12 HELIX 14 14 LYS C 91 ALA C 101 1 11 HELIX 15 15 THR C 112 GLY C 128 1 17 HELIX 16 16 PHE D 14 LEU D 28 1 15 HELIX 17 17 ASP D 38 GLN D 47 1 10 HELIX 18 18 ASP D 64 ASP D 75 1 12 HELIX 19 19 LYS D 91 ALA D 101 1 11 HELIX 20 20 THR D 112 GLY D 128 1 17 HELIX 21 21 SER E 7 ASN E 16 1 10 HELIX 22 22 SER F 7 LEU F 15 1 9 SHEET 1 A 5 VAL A 33 ALA A 36 0 SHEET 2 A 5 PHE A 8 VAL A 11 1 N VAL A 10 O GLU A 34 SHEET 3 A 5 PHE A 53 SER A 56 1 O ILE A 55 N VAL A 11 SHEET 4 A 5 VAL A 83 THR A 87 1 O LEU A 84 N VAL A 54 SHEET 5 A 5 GLY A 105 VAL A 108 1 O VAL A 107 N MSE A 85 SHEET 1 B 5 VAL B 33 ALA B 36 0 SHEET 2 B 5 PHE B 8 VAL B 11 1 N VAL B 10 O GLU B 34 SHEET 3 B 5 PHE B 53 SER B 56 1 O ILE B 55 N VAL B 11 SHEET 4 B 5 VAL B 83 THR B 87 1 O LEU B 84 N VAL B 54 SHEET 5 B 5 GLY B 105 VAL B 108 1 O VAL B 107 N MSE B 85 SHEET 1 C 5 VAL C 33 ALA C 36 0 SHEET 2 C 5 PHE C 8 VAL C 11 1 N VAL C 10 O GLU C 34 SHEET 3 C 5 PHE C 53 ASP C 57 1 O ILE C 55 N VAL C 11 SHEET 4 C 5 VAL C 83 THR C 87 1 O LEU C 84 N VAL C 54 SHEET 5 C 5 GLY C 105 VAL C 108 1 O GLY C 105 N MSE C 85 SHEET 1 D 5 VAL D 33 ALA D 36 0 SHEET 2 D 5 PHE D 8 VAL D 11 1 N VAL D 10 O GLU D 34 SHEET 3 D 5 PHE D 53 ASP D 57 1 O ILE D 55 N VAL D 11 SHEET 4 D 5 VAL D 83 THR D 87 1 O LEU D 84 N VAL D 54 SHEET 5 D 5 GLY D 105 VAL D 108 1 O GLY D 105 N MSE D 85 LINK C THR A 16 N MSE A 17 1555 1555 1.34 LINK C MSE A 17 N ARG A 18 1555 1555 1.33 LINK C ASN A 59 N MSE A 60 1555 1555 1.32 LINK C MSE A 60 N PRO A 61 1555 1555 1.32 LINK C ASN A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N ASP A 64 1555 1555 1.33 LINK C ALA A 77 N MSE A 78 1555 1555 1.33 LINK C MSE A 78 N SER A 79 1555 1555 1.32 LINK C LEU A 84 N MSE A 85 1555 1555 1.32 LINK C MSE A 85 N VAL A 86 1555 1555 1.33 LINK C THR B 16 N MSE B 17 1555 1555 1.33 LINK C MSE B 17 N ARG B 18 1555 1555 1.34 LINK C ASN B 59 N MSE B 60 1555 1555 1.33 LINK C MSE B 60 N PRO B 61 1555 1555 1.32 LINK C ASN B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N ASP B 64 1555 1555 1.33 LINK C ALA B 77 N MSE B 78 1555 1555 1.33 LINK C MSE B 78 N SER B 79 1555 1555 1.32 LINK C LEU B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N VAL B 86 1555 1555 1.32 LINK C GLY B 128 N MSE B 129 1555 1555 1.33 LINK C THR C 16 N MSE C 17 1555 1555 1.33 LINK C MSE C 17 N ARG C 18 1555 1555 1.33 LINK C ASN C 59 N MSE C 60 1555 1555 1.33 LINK C AMSE C 60 N PRO C 61 1555 1555 1.32 LINK C BMSE C 60 N PRO C 61 1555 1555 1.32 LINK C ASN C 62 N MSE C 63 1555 1555 1.32 LINK C MSE C 63 N ASP C 64 1555 1555 1.33 LINK C ALA C 77 N MSE C 78 1555 1555 1.33 LINK C MSE C 78 N SER C 79 1555 1555 1.32 LINK C LEU C 84 N MSE C 85 1555 1555 1.34 LINK C MSE C 85 N VAL C 86 1555 1555 1.33 LINK C GLY C 128 N MSE C 129 1555 1555 1.33 LINK C THR D 16 N MSE D 17 1555 1555 1.33 LINK C MSE D 17 N ARG D 18 1555 1555 1.33 LINK C ASN D 59 N MSE D 60 1555 1555 1.33 LINK C AMSE D 60 N PRO D 61 1555 1555 1.32 LINK C BMSE D 60 N PRO D 61 1555 1555 1.32 LINK C ASN D 62 N MSE D 63 1555 1555 1.33 LINK C MSE D 63 N ASP D 64 1555 1555 1.32 LINK C ALA D 77 N MSE D 78 1555 1555 1.33 LINK C MSE D 78 N SER D 79 1555 1555 1.32 LINK C LEU D 84 N MSE D 85 1555 1555 1.33 LINK C MSE D 85 N VAL D 86 1555 1555 1.33 LINK C GLY D 128 N MSE D 129 1555 1555 1.33 CISPEP 1 LYS A 109 PRO A 110 0 -0.60 CISPEP 2 LYS B 109 PRO B 110 0 -0.57 CISPEP 3 LYS C 109 PRO C 110 0 0.80 CISPEP 4 LYS D 109 PRO D 110 0 0.71 SITE 1 AC1 7 LYS C 7 ASN C 32 HOH C 653 HOH C 656 SITE 2 AC1 7 HOH C 719 ARG D 22 LYS D 26 SITE 1 AC2 9 ARG C 22 LYS C 26 HOH C 637 HOH C 652 SITE 2 AC2 9 HOH C 716 GLU D 5 LYS D 7 ASN D 32 SITE 3 AC2 9 HOH D 707 SITE 1 AC3 5 VAL C 107 VAL C 108 THR C 115 LYS C 119 SITE 2 AC3 5 HOH C 633 SITE 1 AC4 5 TRP D 106 VAL D 107 VAL D 108 LYS D 119 SITE 2 AC4 5 HOH D 631 CRYST1 54.280 53.480 54.100 60.36 60.75 60.57 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018423 -0.010394 -0.007256 0.00000 SCALE2 0.000000 0.021469 -0.007630 0.00000 SCALE3 0.000000 0.000000 0.022484 0.00000