HEADER CHAPERONE 09-AUG-04 1U96 TITLE SOLUTION STRUCTURE OF YEAST COX17 WITH COPPER BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C OXIDASE COPPER CHAPERONE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: COX17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-3A KEYWDS METALLOCHAPERONE, UNSTRUCTURED N-TERMINUS, TWO ALPHA-HELICES, KEYWDS 2 CYTOCHROME C OXIDASE, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ABAJIAN,L.A.YATSUNYK,B.E.RAMIREZ,A.C.ROSENZWEIG REVDAT 6 20-DEC-17 1U96 1 REMARK REVDAT 5 24-FEB-09 1U96 1 VERSN REVDAT 4 05-APR-05 1U96 1 JRNL REVDAT 3 01-MAR-05 1U96 1 HET HETATM HETNAM FORMUL REVDAT 2 12-OCT-04 1U96 1 HET HETNAM FORMUL HETATM REVDAT 1 05-OCT-04 1U96 0 JRNL AUTH C.ABAJIAN,L.A.YATSUNYK,B.E.RAMIREZ,A.C.ROSENZWEIG JRNL TITL YEAST COX17 SOLUTION STRUCTURE AND COPPER(I) BINDING. JRNL REF J.BIOL.CHEM. V. 279 53584 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15465825 JRNL DOI 10.1074/JBC.M408099200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, ARIA 1.2 REMARK 3 AUTHORS : BRUNGER ET AL. (CNS), LINGE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U96 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023402. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50MM SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM COX17 U-15N,13C; 100 MM REMARK 210 POTASSIUM PHOSPHATE, PH 6.0; 50 REMARK 210 MM SODIUM CHLORIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-EDITED_NOESY; 3D_13C REMARK 210 -EDITED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, FELIX 2000, VNMR 6.1B REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RETRAINT ENERGIES, REMARK 210 RESTRAINT VIOLATIONS, AND RMS REMARK 210 DEVIATIONS FROM IDEAL COVALENT REMARK 210 GEOMETRIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NMR SAMPLES WERE REDUCED AND KEPT ANAEROBIC REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 6 -51.04 -153.09 REMARK 500 1 GLN A 10 100.78 59.70 REMARK 500 1 ALA A 14 -64.96 -122.38 REMARK 500 1 CYS A 16 100.24 60.37 REMARK 500 1 ASP A 18 175.77 60.48 REMARK 500 1 LYS A 19 100.39 62.12 REMARK 500 1 PRO A 20 -80.49 -75.14 REMARK 500 1 LYS A 21 55.50 -144.87 REMARK 500 1 PRO A 22 91.55 -23.91 REMARK 500 1 CYS A 23 -159.67 -67.71 REMARK 500 1 LYS A 27 -50.94 -161.02 REMARK 500 1 GLN A 42 -7.90 65.26 REMARK 500 1 GLU A 45 17.66 58.53 REMARK 500 1 TYR A 61 17.73 55.64 REMARK 500 1 PHE A 63 -90.89 -141.64 REMARK 500 1 GLU A 64 139.66 -171.52 REMARK 500 1 SER A 67 -178.12 60.30 REMARK 500 2 GLU A 3 -73.22 -70.56 REMARK 500 2 THR A 4 -65.26 -142.22 REMARK 500 2 GLN A 8 105.36 61.72 REMARK 500 2 HIS A 13 -35.70 -142.25 REMARK 500 2 ALA A 14 -70.48 -164.03 REMARK 500 2 CYS A 16 97.17 58.02 REMARK 500 2 ASP A 18 -160.30 57.02 REMARK 500 2 LYS A 19 102.83 61.53 REMARK 500 2 LYS A 21 63.93 61.48 REMARK 500 2 CYS A 23 17.63 -161.79 REMARK 500 2 VAL A 25 -32.07 -159.48 REMARK 500 2 LYS A 27 -53.38 -165.86 REMARK 500 2 SER A 44 96.65 -171.16 REMARK 500 2 LYS A 46 88.89 59.88 REMARK 500 2 GLU A 64 -165.80 60.36 REMARK 500 2 VAL A 65 106.23 64.39 REMARK 500 3 GLU A 3 -70.25 -138.82 REMARK 500 3 THR A 4 -96.33 42.87 REMARK 500 3 LYS A 6 118.08 64.39 REMARK 500 3 ASN A 12 -82.55 61.66 REMARK 500 3 ALA A 14 -56.46 -167.29 REMARK 500 3 GLU A 15 171.27 62.10 REMARK 500 3 LYS A 19 96.46 57.30 REMARK 500 3 LYS A 21 70.81 -172.49 REMARK 500 3 PRO A 22 87.97 -56.47 REMARK 500 3 VAL A 25 -32.48 -143.67 REMARK 500 3 LYS A 27 -51.80 -126.51 REMARK 500 3 PHE A 39 -71.30 -76.09 REMARK 500 3 SER A 44 -71.00 -75.97 REMARK 500 3 TYR A 61 -31.69 -146.95 REMARK 500 3 PHE A 63 -32.96 -135.44 REMARK 500 3 GLU A 64 -32.11 -167.18 REMARK 500 4 THR A 4 -65.54 -97.82 REMARK 500 REMARK 500 THIS ENTRY HAS 322 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 70 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 N REMARK 620 2 CYS A 23 SG 83.3 REMARK 620 3 CYS A 26 SG 98.0 176.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 70 DBREF 1U96 A 2 69 UNP Q12287 COX17_YEAST 1 68 SEQADV 1U96 MET A 1 UNP Q12287 INITIATING METHIONINE SEQRES 1 A 69 MET THR GLU THR ASP LYS LYS GLN GLU GLN GLU ASN HIS SEQRES 2 A 69 ALA GLU CYS GLU ASP LYS PRO LYS PRO CYS CYS VAL CYS SEQRES 3 A 69 LYS PRO GLU LYS GLU GLU ARG ASP THR CYS ILE LEU PHE SEQRES 4 A 69 ASN GLY GLN ASP SER GLU LYS CYS LYS GLU PHE ILE GLU SEQRES 5 A 69 LYS TYR LYS GLU CYS MET LYS GLY TYR GLY PHE GLU VAL SEQRES 6 A 69 PRO SER ALA ASN HET CU1 A 70 1 HETNAM CU1 COPPER (I) ION FORMUL 2 CU1 CU 1+ HELIX 1 1 LYS A 27 ASN A 40 1 14 HELIX 2 2 SER A 44 LYS A 46 5 3 HELIX 3 3 CYS A 47 GLY A 60 1 14 LINK CU CU1 A 70 N CYS A 23 1555 1555 2.45 LINK CU CU1 A 70 SG CYS A 23 1555 1555 2.26 LINK CU CU1 A 70 SG CYS A 26 1555 1555 2.26 SITE 1 AC1 4 PRO A 22 CYS A 23 VAL A 25 CYS A 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1