HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-AUG-04 1U9D TITLE STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION FROM VIBRIO CHOLERAE O1 TITLE 2 BIOVAR ELTOR STR. N16961 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN VC0714; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: O1 BIOVAR ELTOR STR. N16961; SOURCE 5 GENE: VC0714; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS STRUCTURAL GENOMICS, MCSG, HYPOTHETICAL PROTEIN, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, PSI, MIDWEST CENTER FOR STRUCTURAL GENOMICS, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR T.A.BINKOWSKI,R.WU,S.F.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 5 06-NOV-24 1U9D 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1U9D 1 VERSN REVDAT 3 24-FEB-09 1U9D 1 VERSN REVDAT 2 18-JAN-05 1U9D 1 AUTHOR KEYWDS REMARK REVDAT 1 21-SEP-04 1U9D 0 JRNL AUTH T.A.BINKOWSKI,R.WU,S.F.MOY,A.JOACHIMIAK JRNL TITL HYPOTHETICAL PROTEIN FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR JRNL TITL 2 STR. N16961 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 23325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1254 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1140 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1952 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : -0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.140 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2004 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1792 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2730 ; 1.492 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4138 ; 0.866 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 5.900 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 310 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2246 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 428 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 441 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2140 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1228 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 126 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.144 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 146 ; 0.355 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1212 ; 1.100 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1956 ; 2.204 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 792 ; 3.475 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 774 ; 5.794 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1U9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 150 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATIC, REMARK 200 SAGITALLY FOCUSED SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23325 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 56.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M NAH2P04/0.8M K2HP04, CAPS, PH REMARK 280 10.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE AUTHORS SEE A DIMER REMARK 300 IN THE ASYMMETRIC UNIT BUT ARE UNSURE OF THE BIOLOGICAL REMARK 300 ACTIVITY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 66.00600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 33.00300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 57.16287 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 33.00300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 57.16287 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -33.00300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 57.16287 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 263 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 262 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 263 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLU B 63 O4 PO4 B 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 76 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 62 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP B 76 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 103 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 42 46.99 -103.96 REMARK 500 ALA A 84 3.18 -68.14 REMARK 500 HIS A 87 67.39 -115.12 REMARK 500 ASN B 42 45.52 -105.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC26373 RELATED DB: TARGETDB DBREF 1U9D A 1 107 UNP Q9KU16 Q9KU16_VIBCH 1 107 DBREF 1U9D B 1 107 UNP Q9KU16 Q9KU16_VIBCH 1 107 SEQADV 1U9D GLY A -14 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D VAL A -13 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D ASP A -12 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D LEU A -11 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D GLY A -10 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D THR A -9 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D GLU A -8 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D ASN A -7 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D LEU A -6 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D TYR A -5 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D PHE A -4 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D SER A -3 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D SER A -2 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D ASN A -1 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D ALA A 0 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D MSE A 1 UNP Q9KU16 MET 1 MODIFIED RESIDUE SEQADV 1U9D MSE A 54 UNP Q9KU16 MET 54 MODIFIED RESIDUE SEQADV 1U9D GLY B -14 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D VAL B -13 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D ASP B -12 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D LEU B -11 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D GLY B -10 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D THR B -9 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D GLU B -8 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D ASN B -7 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D LEU B -6 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D TYR B -5 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D PHE B -4 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D SER B -3 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D SER B -2 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D ASN B -1 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D ALA B 0 UNP Q9KU16 CLONING ARTIFACT SEQADV 1U9D MSE B 1 UNP Q9KU16 MET 1 MODIFIED RESIDUE SEQADV 1U9D MSE B 54 UNP Q9KU16 MET 54 MODIFIED RESIDUE SEQRES 1 A 122 GLY VAL ASP LEU GLY THR GLU ASN LEU TYR PHE SER SER SEQRES 2 A 122 ASN ALA MSE PRO HIS LEU ARG PHE ARG ALA VAL GLU ALA SEQRES 3 A 122 HIS ILE VAL GLU SER LEU VAL PRO THR LEU LEU ASN GLU SEQRES 4 A 122 LEU SER SER LEU LEU SER THR ALA ARG ASN ALA PHE THR SEQRES 5 A 122 PHE GLU LEU ILE ASN THR GLN TYR PHE ALA GLU GLY GLY SEQRES 6 A 122 VAL TYR PRO MSE VAL GLU VAL LEU TRP PHE GLY ARG GLU SEQRES 7 A 122 GLN GLN THR GLN ASP GLN ILE ALA GLN VAL ILE THR ASP SEQRES 8 A 122 GLN ILE ARG GLN LEU LEU GLY ALA ASP SER HIS LEU ALA SEQRES 9 A 122 VAL VAL PHE ILE PRO LEU GLN ARG THR ALA TYR TYR LEU SEQRES 10 A 122 ASP GLY GLN HIS PHE SEQRES 1 B 122 GLY VAL ASP LEU GLY THR GLU ASN LEU TYR PHE SER SER SEQRES 2 B 122 ASN ALA MSE PRO HIS LEU ARG PHE ARG ALA VAL GLU ALA SEQRES 3 B 122 HIS ILE VAL GLU SER LEU VAL PRO THR LEU LEU ASN GLU SEQRES 4 B 122 LEU SER SER LEU LEU SER THR ALA ARG ASN ALA PHE THR SEQRES 5 B 122 PHE GLU LEU ILE ASN THR GLN TYR PHE ALA GLU GLY GLY SEQRES 6 B 122 VAL TYR PRO MSE VAL GLU VAL LEU TRP PHE GLY ARG GLU SEQRES 7 B 122 GLN GLN THR GLN ASP GLN ILE ALA GLN VAL ILE THR ASP SEQRES 8 B 122 GLN ILE ARG GLN LEU LEU GLY ALA ASP SER HIS LEU ALA SEQRES 9 B 122 VAL VAL PHE ILE PRO LEU GLN ARG THR ALA TYR TYR LEU SEQRES 10 B 122 ASP GLY GLN HIS PHE MODRES 1U9D MSE A 1 MET SELENOMETHIONINE MODRES 1U9D MSE A 54 MET SELENOMETHIONINE MODRES 1U9D MSE B 1 MET SELENOMETHIONINE MODRES 1U9D MSE B 54 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 54 8 HET MSE B 1 8 HET MSE B 54 8 HET PO4 A 202 5 HET PO4 B 201 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *153(H2 O) HELIX 1 1 GLU A 10 SER A 30 1 21 HELIX 2 2 ALA A 32 PHE A 36 5 5 HELIX 3 3 GLU A 63 GLY A 83 1 21 HELIX 4 4 GLN A 96 ALA A 99 5 4 HELIX 5 5 GLU B 10 SER B 30 1 21 HELIX 6 6 ALA B 32 PHE B 36 5 5 HELIX 7 7 GLU B 63 GLY B 83 1 21 HELIX 8 8 GLN B 96 ALA B 99 5 4 SHEET 1 A 4 THR A 37 LEU A 40 0 SHEET 2 A 4 HIS A 3 ARG A 7 1 N LEU A 4 O THR A 37 SHEET 3 A 4 MSE A 54 TRP A 59 -1 O MSE A 54 N ARG A 7 SHEET 4 A 4 ALA A 89 PRO A 94 1 O ILE A 93 N VAL A 57 SHEET 1 B 2 TYR A 101 LEU A 102 0 SHEET 2 B 2 GLN A 105 HIS A 106 -1 O GLN A 105 N LEU A 102 SHEET 1 C 4 THR B 37 LEU B 40 0 SHEET 2 C 4 HIS B 3 ARG B 7 1 N LEU B 4 O THR B 37 SHEET 3 C 4 MSE B 54 TRP B 59 -1 O GLU B 56 N ARG B 5 SHEET 4 C 4 ALA B 89 PRO B 94 1 O ILE B 93 N VAL B 57 SHEET 1 D 2 TYR B 101 LEU B 102 0 SHEET 2 D 2 GLN B 105 HIS B 106 -1 O GLN B 105 N LEU B 102 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N PRO A 2 1555 1555 1.32 LINK C PRO A 53 N MSE A 54 1555 1555 1.33 LINK C MSE A 54 N VAL A 55 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N PRO B 2 1555 1555 1.33 LINK C PRO B 53 N MSE B 54 1555 1555 1.33 LINK C MSE B 54 N VAL B 55 1555 1555 1.32 SITE 1 AC1 5 LEU A 82 SER A 86 ARG B 62 GLU B 63 SITE 2 AC1 5 THR B 66 SITE 1 AC2 8 ARG A 62 GLU A 63 THR A 66 HOH A 236 SITE 2 AC2 8 HOH A 245 HOH A 280 ASP B 85 SER B 86 CRYST1 66.006 66.006 47.831 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015150 0.008747 0.000000 0.00000 SCALE2 0.000000 0.017494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020907 0.00000