data_1U9G # _entry.id 1U9G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1U9G RCSB RCSB023410 WWPDB D_1000023410 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1U9F . unspecified PDB 1U9H . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1U9G _pdbx_database_status.recvd_initial_deposition_date 2004-08-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Horne, W.S.' 1 'Yadav, M.K.' 2 'Stout, C.D.' 3 'Ghadiri, M.R.' 4 # _citation.id primary _citation.title 'Heterocyclic peptide backbone modifications in an alpha-helical coiled coil.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 126 _citation.page_first 15366 _citation.page_last 15367 _citation.year 2004 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15563148 _citation.pdbx_database_id_DOI 10.1021/ja0450408 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Horne, W.S.' 1 primary 'Yadav, M.K.' 2 primary 'Stout, C.D.' 3 primary 'Ghadiri, M.R.' 4 # _cell.entry_id 1U9G _cell.length_a 78.228 _cell.length_b 78.228 _cell.length_c 78.228 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U9G _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'General control protein GCN4' 3998.696 2 ? '(TA4)9L, D8K' ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 19 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Amino acid biosynthesis regulatory protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'RMKQIED(TA4)EEILSKLYHIENELARIKKLLGER' _entity_poly.pdbx_seq_one_letter_code_can RMKQIEDXEEILSKLYHIENELARIKKLLGER _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 MET n 1 3 LYS n 1 4 GLN n 1 5 ILE n 1 6 GLU n 1 7 ASP n 1 8 TA4 n 1 9 GLU n 1 10 GLU n 1 11 ILE n 1 12 LEU n 1 13 SER n 1 14 LYS n 1 15 LEU n 1 16 TYR n 1 17 HIS n 1 18 ILE n 1 19 GLU n 1 20 ASN n 1 21 GLU n 1 22 LEU n 1 23 ALA n 1 24 ARG n 1 25 ILE n 1 26 LYS n 1 27 LYS n 1 28 LEU n 1 29 LEU n 1 30 GLY n 1 31 GLU n 1 32 ARG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;Prepared by Fmoc solid phase peptide synthesis.The sequence of this protein can be found naturally in Saccharomyces cerevisiae (Baker's yeast). ; # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1U9G _struct_ref.pdbx_db_accession 1U9G _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1U9G A 1 ? 32 ? 1U9G 2 ? 33 ? 2 33 2 1 1U9G B 1 ? 32 ? 1U9G 2 ? 33 ? 2 33 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 TA4 'L-peptide linking' . '(S)-2-[4-(AMINOMETHYL)-1H-1,2,3-TRIAZOL-1-YL]-4-METHYLPENTANOIC ACID' ? 'C9 H16 N4 O2' 212.249 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 1U9G _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '0.4 M lithium sulfate monohydrate, 12% w/v PEG 8000, 20% v/v anhydrous glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2004-04-13 _diffrn_detector.details 'osmic confocal mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1U9G _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 45.17 _reflns.number_all ? _reflns.number_obs 4526 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.031 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs 0.326 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1U9G _refine.ls_number_reflns_obs 4295 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.17 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.65 _refine.ls_R_factor_obs 0.24856 _refine.ls_R_factor_all 0.24856 _refine.ls_R_factor_R_work 0.24477 _refine.ls_R_factor_R_free 0.32575 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 208 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.930 _refine.correlation_coeff_Fo_to_Fc_free 0.882 _refine.B_iso_mean 46.590 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.206 _refine.pdbx_overall_ESU_R_Free 0.219 _refine.overall_SU_ML 0.162 _refine.overall_SU_B 6.689 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 363 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 387 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 45.17 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.021 ? 371 'X-RAY DIFFRACTION' ? r_bond_other_d 0.030 0.020 ? 360 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.664 2.083 ? 501 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.979 3.000 ? 829 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.456 5.000 ? 42 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.236 26.000 ? 15 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.793 15.000 ? 67 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.195 15.000 ? 1 'X-RAY DIFFRACTION' ? r_chiral_restr 0.092 0.200 ? 61 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 381 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 60 'X-RAY DIFFRACTION' ? r_nbd_refined 0.323 0.200 ? 86 'X-RAY DIFFRACTION' ? r_nbd_other 0.189 0.200 ? 320 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.211 0.200 ? 159 'X-RAY DIFFRACTION' ? r_nbtor_other 0.103 0.200 ? 215 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.305 0.200 ? 9 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.014 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.234 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.274 0.200 ? 32 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.407 0.200 ? 12 'X-RAY DIFFRACTION' ? r_mcbond_it 1.783 1.500 ? 231 'X-RAY DIFFRACTION' ? r_mcbond_other 10.153 1.500 ? 98 'X-RAY DIFFRACTION' ? r_mcangle_it 2.147 2.000 ? 350 'X-RAY DIFFRACTION' ? r_scbond_it 3.229 3.000 ? 158 'X-RAY DIFFRACTION' ? r_scangle_it 4.429 4.500 ? 151 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.202 _refine_ls_shell.d_res_low 2.259 _refine_ls_shell.number_reflns_R_work 313 _refine_ls_shell.R_factor_R_work 0.292 _refine_ls_shell.percent_reflns_obs 99.39 _refine_ls_shell.R_factor_R_free 0.32 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1U9G _struct.title 'Heterocyclic Peptide Backbone Modification in GCN4-pLI Based Coiled Coils: Replacement of K(8)L(9)' _struct.pdbx_descriptor 'General control protein GCN4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1U9G _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'tetrameric alpha-helical coiled coil with heteerocycic backbone modification, transcription' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The tetramer formed by chains A and B is generated by the two fold axis: 3/4+z,1/4+y,1/4-x' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TA4 A 8 ? LYS A 26 ? TA4 A 9 LYS A 27 1 ? 19 HELX_P HELX_P2 2 TA4 B 8 ? LEU B 29 ? TA4 B 9 LEU B 30 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A TA4 8 C ? ? ? 1_555 A GLU 9 N ? ? A TA4 9 A GLU 10 1_555 ? ? ? ? ? ? ? 1.312 ? covale2 covale ? ? B TA4 8 C ? ? ? 1_555 B GLU 9 N ? ? B TA4 9 B GLU 10 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 15 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 B 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 GLU A 10 ? GLU A 11 . ? 15_554 ? 2 AC1 15 GLU A 10 ? GLU A 11 . ? 20_554 ? 3 AC1 15 GLU A 10 ? GLU A 11 . ? 22_554 ? 4 AC1 15 LYS A 14 ? LYS A 15 . ? 22_554 ? 5 AC1 15 LYS A 14 ? LYS A 15 . ? 15_554 ? 6 AC1 15 LYS A 14 ? LYS A 15 . ? 20_554 ? 7 AC1 15 HOH D . ? HOH A 36 . ? 20_554 ? 8 AC1 15 HOH D . ? HOH A 36 . ? 15_554 ? 9 AC1 15 HOH D . ? HOH A 36 . ? 22_554 ? 10 AC1 15 HOH D . ? HOH A 38 . ? 20_554 ? 11 AC1 15 HOH D . ? HOH A 38 . ? 15_554 ? 12 AC1 15 HOH D . ? HOH A 38 . ? 22_554 ? 13 AC1 15 TYR B 16 ? TYR B 17 . ? 6_555 ? 14 AC1 15 TYR B 16 ? TYR B 17 . ? 12_554 ? 15 AC1 15 TYR B 16 ? TYR B 17 . ? 1_555 ? # _database_PDB_matrix.entry_id 1U9G _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1U9G _atom_sites.fract_transf_matrix[1][1] 0.012783 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012783 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012783 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 2 ? ? ? A . n A 1 2 MET 2 3 ? ? ? A . n A 1 3 LYS 3 4 ? ? ? A . n A 1 4 GLN 4 5 ? ? ? A . n A 1 5 ILE 5 6 ? ? ? A . n A 1 6 GLU 6 7 ? ? ? A . n A 1 7 ASP 7 8 ? ? ? A . n A 1 8 TA4 8 9 9 TA4 TRL A . n A 1 9 GLU 9 10 10 GLU GLU A . n A 1 10 GLU 10 11 11 GLU GLU A . n A 1 11 ILE 11 12 12 ILE ILE A . n A 1 12 LEU 12 13 13 LEU LEU A . n A 1 13 SER 13 14 14 SER SER A . n A 1 14 LYS 14 15 15 LYS LYS A . n A 1 15 LEU 15 16 16 LEU LEU A . n A 1 16 TYR 16 17 17 TYR TYR A . n A 1 17 HIS 17 18 18 HIS HIS A . n A 1 18 ILE 18 19 19 ILE ILE A . n A 1 19 GLU 19 20 20 GLU GLU A . n A 1 20 ASN 20 21 21 ASN ASN A . n A 1 21 GLU 21 22 22 GLU GLU A . n A 1 22 LEU 22 23 23 LEU LEU A . n A 1 23 ALA 23 24 24 ALA ALA A . n A 1 24 ARG 24 25 25 ARG ARG A . n A 1 25 ILE 25 26 26 ILE ILE A . n A 1 26 LYS 26 27 27 LYS LYS A . n A 1 27 LYS 27 28 28 LYS LYS A . n A 1 28 LEU 28 29 29 LEU LEU A . n A 1 29 LEU 29 30 30 LEU LEU A . n A 1 30 GLY 30 31 ? ? ? A . n A 1 31 GLU 31 32 ? ? ? A . n A 1 32 ARG 32 33 ? ? ? A . n B 1 1 ARG 1 2 ? ? ? B . n B 1 2 MET 2 3 ? ? ? B . n B 1 3 LYS 3 4 ? ? ? B . n B 1 4 GLN 4 5 ? ? ? B . n B 1 5 ILE 5 6 ? ? ? B . n B 1 6 GLU 6 7 ? ? ? B . n B 1 7 ASP 7 8 ? ? ? B . n B 1 8 TA4 8 9 9 TA4 TRL B . n B 1 9 GLU 9 10 10 GLU GLU B . n B 1 10 GLU 10 11 11 GLU GLU B . n B 1 11 ILE 11 12 12 ILE ILE B . n B 1 12 LEU 12 13 13 LEU LEU B . n B 1 13 SER 13 14 14 SER SER B . n B 1 14 LYS 14 15 15 LYS LYS B . n B 1 15 LEU 15 16 16 LEU LEU B . n B 1 16 TYR 16 17 17 TYR TYR B . n B 1 17 HIS 17 18 18 HIS HIS B . n B 1 18 ILE 18 19 19 ILE ILE B . n B 1 19 GLU 19 20 20 GLU GLU B . n B 1 20 ASN 20 21 21 ASN ASN B . n B 1 21 GLU 21 22 22 GLU GLU B . n B 1 22 LEU 22 23 23 LEU LEU B . n B 1 23 ALA 23 24 24 ALA ALA B . n B 1 24 ARG 24 25 25 ARG ARG B . n B 1 25 ILE 25 26 26 ILE ILE B . n B 1 26 LYS 26 27 27 LYS LYS B . n B 1 27 LYS 27 28 28 LYS LYS B . n B 1 28 LEU 28 29 29 LEU LEU B . n B 1 29 LEU 29 30 30 LEU LEU B . n B 1 30 GLY 30 31 ? ? ? B . n B 1 31 GLU 31 32 ? ? ? B . n B 1 32 ARG 32 33 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 1 1 SO4 SO4 B . D 3 HOH 1 34 5 HOH HOH A . D 3 HOH 2 35 7 HOH HOH A . D 3 HOH 3 36 8 HOH HOH A . D 3 HOH 4 37 11 HOH HOH A . D 3 HOH 5 38 16 HOH HOH A . D 3 HOH 6 39 27 HOH HOH A . D 3 HOH 7 40 29 HOH HOH A . D 3 HOH 8 41 32 HOH HOH A . D 3 HOH 9 42 39 HOH HOH A . E 3 HOH 1 34 3 HOH HOH B . E 3 HOH 2 35 4 HOH HOH B . E 3 HOH 3 36 9 HOH HOH B . E 3 HOH 4 37 14 HOH HOH B . E 3 HOH 5 38 21 HOH HOH B . E 3 HOH 6 39 34 HOH HOH B . E 3 HOH 7 40 36 HOH HOH B . E 3 HOH 8 41 37 HOH HOH B . E 3 HOH 9 42 38 HOH HOH B . E 3 HOH 10 43 40 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA,PQS tetrameric 4 2 software_defined_assembly PISA hexameric 6 3 software_defined_assembly PISA hexameric 6 4 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E 2 1,3,4 B,C,E 2 5,6,2 A,D 3 1,7,8 A,B,C,D,E 4 1,3,4 A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4560 ? 1 MORE -49 ? 1 'SSA (A^2)' 4930 ? 2 'ABSA (A^2)' 5780 ? 2 MORE -103 ? 2 'SSA (A^2)' 9000 ? 3 'ABSA (A^2)' 4350 ? 3 MORE -89 ? 3 'SSA (A^2)' 10430 ? 4 'ABSA (A^2)' 4110 ? 4 MORE -88 ? 4 'SSA (A^2)' 10670 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 22_554 z+1/4,-y+1/4,x-1/4 0.0000000000 0.0000000000 1.0000000000 19.5570000000 0.0000000000 -1.0000000000 0.0000000000 19.5570000000 1.0000000000 0.0000000000 0.0000000000 -19.5570000000 3 'crystal symmetry operation' 6_555 z+1/2,-x+1/2,-y 0.0000000000 0.0000000000 1.0000000000 39.1140000000 -1.0000000000 0.0000000000 0.0000000000 39.1140000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 4 'crystal symmetry operation' 12_554 -y+1/2,-z,x-1/2 0.0000000000 -1.0000000000 0.0000000000 39.1140000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -39.1140000000 5 'crystal symmetry operation' 15_554 y+1/4,-x+1/4,z-1/4 0.0000000000 1.0000000000 0.0000000000 19.5570000000 -1.0000000000 0.0000000000 0.0000000000 19.5570000000 0.0000000000 0.0000000000 1.0000000000 -19.5570000000 6 'crystal symmetry operation' 20_554 x+1/4,-z+1/4,y-1/4 1.0000000000 0.0000000000 0.0000000000 19.5570000000 0.0000000000 0.0000000000 -1.0000000000 19.5570000000 0.0000000000 1.0000000000 0.0000000000 -19.5570000000 7 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 8 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B SO4 1 ? C SO4 . 2 1 B SO4 1 ? C SO4 . 3 1 A HOH 38 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-30 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0003 ? 1 CrystalClear 'data reduction' '(MSC/RIGAKU)' ? 2 CrystalClear 'data scaling' '(MSC/RIGAKU)' ? 3 PHASER phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 39 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 41 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 42 ? ? 1_555 O B HOH 43 ? ? 22_554 1.99 2 1 O A HOH 35 ? ? 1_555 O B HOH 37 ? ? 16_545 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 27 ? ? -57.19 -126.25 2 1 LYS A 28 ? ? 16.02 -71.47 3 1 LEU A 29 ? ? -61.55 40.23 4 1 LEU B 29 ? ? -49.32 -72.24 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 25 ? CG ? A ARG 24 CG 2 1 Y 1 A ARG 25 ? CD ? A ARG 24 CD 3 1 Y 1 A ARG 25 ? NE ? A ARG 24 NE 4 1 Y 1 A ARG 25 ? CZ ? A ARG 24 CZ 5 1 Y 1 A ARG 25 ? NH1 ? A ARG 24 NH1 6 1 Y 1 A ARG 25 ? NH2 ? A ARG 24 NH2 7 1 Y 1 A LYS 27 ? CD ? A LYS 26 CD 8 1 Y 1 A LYS 27 ? CE ? A LYS 26 CE 9 1 Y 1 A LYS 27 ? NZ ? A LYS 26 NZ 10 1 Y 1 A LYS 28 ? CG ? A LYS 27 CG 11 1 Y 1 A LYS 28 ? CD ? A LYS 27 CD 12 1 Y 1 A LYS 28 ? CE ? A LYS 27 CE 13 1 Y 1 A LYS 28 ? NZ ? A LYS 27 NZ 14 1 Y 1 A LEU 29 ? CG ? A LEU 28 CG 15 1 Y 1 A LEU 29 ? CD1 ? A LEU 28 CD1 16 1 Y 1 A LEU 29 ? CD2 ? A LEU 28 CD2 17 1 Y 1 B LYS 27 ? CD ? B LYS 26 CD 18 1 Y 1 B LYS 27 ? CE ? B LYS 26 CE 19 1 Y 1 B LYS 27 ? NZ ? B LYS 26 NZ 20 1 Y 1 B LYS 28 ? CG ? B LYS 27 CG 21 1 Y 1 B LYS 28 ? CD ? B LYS 27 CD 22 1 Y 1 B LYS 28 ? CE ? B LYS 27 CE 23 1 Y 1 B LYS 28 ? NZ ? B LYS 27 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 2 ? A ARG 1 2 1 Y 1 A MET 3 ? A MET 2 3 1 Y 1 A LYS 4 ? A LYS 3 4 1 Y 1 A GLN 5 ? A GLN 4 5 1 Y 1 A ILE 6 ? A ILE 5 6 1 Y 1 A GLU 7 ? A GLU 6 7 1 Y 1 A ASP 8 ? A ASP 7 8 1 Y 1 A GLY 31 ? A GLY 30 9 1 Y 1 A GLU 32 ? A GLU 31 10 1 Y 1 A ARG 33 ? A ARG 32 11 1 Y 1 B ARG 2 ? B ARG 1 12 1 Y 1 B MET 3 ? B MET 2 13 1 Y 1 B LYS 4 ? B LYS 3 14 1 Y 1 B GLN 5 ? B GLN 4 15 1 Y 1 B ILE 6 ? B ILE 5 16 1 Y 1 B GLU 7 ? B GLU 6 17 1 Y 1 B ASP 8 ? B ASP 7 18 1 Y 1 B GLY 31 ? B GLY 30 19 1 Y 1 B GLU 32 ? B GLU 31 20 1 Y 1 B ARG 33 ? B ARG 32 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #