data_1U9V # _entry.id 1U9V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1U9V pdb_00001u9v 10.2210/pdb1u9v/pdb RCSB RCSB023425 ? ? WWPDB D_1000023425 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1MEM . unspecified PDB 1ATK . unspecified PDB 1U9W 'the same protein in complex with the covalent inhibitor NVP-ABI491' unspecified PDB 1U9X 'the same protein in complex with the covalent inhibitor NVP-ABJ688' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1U9V _pdbx_database_status.recvd_initial_deposition_date 2004-08-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Cowan-Jacob, S.W.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Novel purine nitrile derived inhibitors of the cysteine protease cathepsin K' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 47 _citation.page_first 5833 _citation.page_last 5836 _citation.year 2004 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15537340 _citation.pdbx_database_id_DOI 10.1021/jm0493111 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Altmann, E.' 1 ? primary 'Cowan-Jacob, S.W.' 2 ? primary 'Missbach, M.' 3 ? # _cell.entry_id 1U9V _cell.length_a 63.200 _cell.length_b 63.200 _cell.length_c 113.800 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U9V _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cathepsin K' 23737.727 1 3.4.22.38 ? ? ? 2 non-polymer syn '6-(CYCLOHEXYLAMINO)-9-[2-(4-METHYLPIPERAZIN-1-YL)-ETHYL]-9H-PURINE-2-CARBONITRILE' 368.479 1 ? ? ? ? 3 water nat water 18.015 81 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cathepsin O, Cathepsin X, Cathepsin O2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_seq_one_letter_code_can ;GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 ALA n 1 4 PRO n 1 5 ASP n 1 6 SER n 1 7 VAL n 1 8 ASP n 1 9 TYR n 1 10 ARG n 1 11 LYS n 1 12 LYS n 1 13 GLY n 1 14 TYR n 1 15 VAL n 1 16 THR n 1 17 PRO n 1 18 VAL n 1 19 LYS n 1 20 ASN n 1 21 GLN n 1 22 GLY n 1 23 GLN n 1 24 CYS n 1 25 GLY n 1 26 SER n 1 27 CYS n 1 28 TRP n 1 29 ALA n 1 30 PHE n 1 31 SER n 1 32 SER n 1 33 VAL n 1 34 GLY n 1 35 ALA n 1 36 LEU n 1 37 GLU n 1 38 GLY n 1 39 GLN n 1 40 LEU n 1 41 LYS n 1 42 LYS n 1 43 LYS n 1 44 THR n 1 45 GLY n 1 46 LYS n 1 47 LEU n 1 48 LEU n 1 49 ASN n 1 50 LEU n 1 51 SER n 1 52 PRO n 1 53 GLN n 1 54 ASN n 1 55 LEU n 1 56 VAL n 1 57 ASP n 1 58 CYS n 1 59 VAL n 1 60 SER n 1 61 GLU n 1 62 ASN n 1 63 ASP n 1 64 GLY n 1 65 CYS n 1 66 GLY n 1 67 GLY n 1 68 GLY n 1 69 TYR n 1 70 MET n 1 71 THR n 1 72 ASN n 1 73 ALA n 1 74 PHE n 1 75 GLN n 1 76 TYR n 1 77 VAL n 1 78 GLN n 1 79 LYS n 1 80 ASN n 1 81 ARG n 1 82 GLY n 1 83 ILE n 1 84 ASP n 1 85 SER n 1 86 GLU n 1 87 ASP n 1 88 ALA n 1 89 TYR n 1 90 PRO n 1 91 TYR n 1 92 VAL n 1 93 GLY n 1 94 GLN n 1 95 GLU n 1 96 GLU n 1 97 SER n 1 98 CYS n 1 99 MET n 1 100 TYR n 1 101 ASN n 1 102 PRO n 1 103 THR n 1 104 GLY n 1 105 LYS n 1 106 ALA n 1 107 ALA n 1 108 LYS n 1 109 CYS n 1 110 ARG n 1 111 GLY n 1 112 TYR n 1 113 ARG n 1 114 GLU n 1 115 ILE n 1 116 PRO n 1 117 GLU n 1 118 GLY n 1 119 ASN n 1 120 GLU n 1 121 LYS n 1 122 ALA n 1 123 LEU n 1 124 LYS n 1 125 ARG n 1 126 ALA n 1 127 VAL n 1 128 ALA n 1 129 ARG n 1 130 VAL n 1 131 GLY n 1 132 PRO n 1 133 VAL n 1 134 SER n 1 135 VAL n 1 136 ALA n 1 137 ILE n 1 138 ASP n 1 139 ALA n 1 140 SER n 1 141 LEU n 1 142 THR n 1 143 SER n 1 144 PHE n 1 145 GLN n 1 146 PHE n 1 147 TYR n 1 148 SER n 1 149 LYS n 1 150 GLY n 1 151 VAL n 1 152 TYR n 1 153 TYR n 1 154 ASP n 1 155 GLU n 1 156 SER n 1 157 CYS n 1 158 ASN n 1 159 SER n 1 160 ASP n 1 161 ASN n 1 162 LEU n 1 163 ASN n 1 164 HIS n 1 165 ALA n 1 166 VAL n 1 167 LEU n 1 168 ALA n 1 169 VAL n 1 170 GLY n 1 171 TYR n 1 172 GLY n 1 173 ILE n 1 174 GLN n 1 175 LYS n 1 176 GLY n 1 177 ASN n 1 178 LYS n 1 179 HIS n 1 180 TRP n 1 181 ILE n 1 182 ILE n 1 183 LYS n 1 184 ASN n 1 185 SER n 1 186 TRP n 1 187 GLY n 1 188 GLU n 1 189 ASN n 1 190 TRP n 1 191 GLY n 1 192 ASN n 1 193 LYS n 1 194 GLY n 1 195 TYR n 1 196 ILE n 1 197 LEU n 1 198 MET n 1 199 ALA n 1 200 ARG n 1 201 ASN n 1 202 LYS n 1 203 ASN n 1 204 ASN n 1 205 ALA n 1 206 CYS n 1 207 GLY n 1 208 ILE n 1 209 ALA n 1 210 ASN n 1 211 LEU n 1 212 ALA n 1 213 SER n 1 214 PHE n 1 215 PRO n 1 216 LYS n 1 217 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus Spodoptera _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line SF21 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type baculovirus _entity_src_gen.pdbx_host_org_vector pMBac-HC9 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATK_HUMAN _struct_ref.pdbx_db_accession P43235 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _struct_ref.pdbx_align_begin 113 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1U9V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 217 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43235 _struct_ref_seq.db_align_beg 113 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 329 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 215 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 IHE non-polymer . '6-(CYCLOHEXYLAMINO)-9-[2-(4-METHYLPIPERAZIN-1-YL)-ETHYL]-9H-PURINE-2-CARBONITRILE' NVP-ABE854 'C19 H28 N8' 368.479 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1U9V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 47. _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.7 _exptl_crystal_grow.pdbx_details 'PEG 4000, Tris, magnesium chloride, pH 8.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 294 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-10-28 _diffrn_detector.details MONOCHROMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR571' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1U9V _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 35.2 _reflns.d_resolution_high 2.2 _reflns.number_obs 12003 _reflns.number_all 12003 _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.0606 _reflns.pdbx_Rsym_value 0.0606 _reflns.pdbx_netI_over_sigmaI 48.76 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.3 _reflns_shell.percent_possible_all 92.3 _reflns_shell.Rmerge_I_obs 0.1824 _reflns_shell.pdbx_Rsym_value 0.1824 _reflns_shell.meanI_over_sigI_obs 16.60 _reflns_shell.pdbx_redundancy 9.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1U9V _refine.ls_number_reflns_obs 11927 _refine.ls_number_reflns_all 11927 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 100000. _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs 97.0 _refine.ls_R_factor_obs 0.17 _refine.ls_R_factor_all 0.173 _refine.ls_R_factor_R_work 0.17 _refine.ls_R_factor_R_free 0.231 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 563 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 21.27 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1MEM' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1631 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 1739 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.562 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 25.84 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.845 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PARHCSDX.PRO _pdbx_xplor_file.topol_file TOPHCSDX.PRO _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 1U9V _struct.title 'Crystal Structure of the Cysteine Protease Human Cathepsin K in Complex with the Covalent Inhibitor NVP-ABE854' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1U9V _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, SULFHYDRYL PROTEINASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 26 ? GLY A 45 ? SER A 24 GLY A 43 1 ? 20 HELX_P HELX_P2 2 SER A 51 ? VAL A 59 ? SER A 49 VAL A 57 1 ? 9 HELX_P HELX_P3 3 ASP A 63 ? GLY A 67 ? ASP A 61 GLY A 65 5 ? 5 HELX_P HELX_P4 4 TYR A 69 ? ARG A 81 ? TYR A 67 ARG A 79 1 ? 13 HELX_P HELX_P5 5 ASN A 119 ? VAL A 130 ? ASN A 117 VAL A 128 1 ? 12 HELX_P HELX_P6 6 LEU A 141 ? PHE A 146 ? LEU A 139 PHE A 144 1 ? 6 HELX_P HELX_P7 7 ASN A 204 ? ILE A 208 ? ASN A 202 ILE A 206 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 65 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf2 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 56 A CYS 96 1_555 ? ? ? ? ? ? ? 2.288 ? ? disulf3 disulf ? ? A CYS 157 SG ? ? ? 1_555 A CYS 206 SG ? ? A CYS 155 A CYS 204 1_555 ? ? ? ? ? ? ? 2.292 ? ? covale1 covale none ? A CYS 27 SG ? ? ? 1_555 B IHE . C27 ? ? A CYS 25 A IHE 300 1_555 ? ? ? ? ? ? ? 1.767 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 7 ? ASP A 8 ? VAL A 5 ASP A 6 A 2 HIS A 164 ? GLN A 174 ? HIS A 162 GLN A 172 A 3 VAL A 133 ? ILE A 137 ? VAL A 131 ILE A 135 B 1 VAL A 7 ? ASP A 8 ? VAL A 5 ASP A 6 B 2 HIS A 164 ? GLN A 174 ? HIS A 162 GLN A 172 B 3 ASN A 177 ? LYS A 183 ? ASN A 175 LYS A 181 B 4 TYR A 195 ? ALA A 199 ? TYR A 193 ALA A 197 B 5 VAL A 151 ? TYR A 152 ? VAL A 149 TYR A 150 C 1 TYR A 112 ? GLU A 114 ? TYR A 110 GLU A 112 C 2 SER A 213 ? PRO A 215 ? SER A 211 PRO A 213 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 7 ? N VAL A 5 O TYR A 171 ? O TYR A 169 A 2 3 O HIS A 164 ? O HIS A 162 N ILE A 137 ? N ILE A 135 B 1 2 N VAL A 7 ? N VAL A 5 O TYR A 171 ? O TYR A 169 B 2 3 N LEU A 167 ? N LEU A 165 O LYS A 183 ? O LYS A 181 B 3 4 N ILE A 182 ? N ILE A 180 O ILE A 196 ? O ILE A 194 B 4 5 O LEU A 197 ? O LEU A 195 N TYR A 152 ? N TYR A 150 C 1 2 N ARG A 113 ? N ARG A 111 O PHE A 214 ? O PHE A 212 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id IHE _struct_site.pdbx_auth_seq_id 300 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'BINDING SITE FOR RESIDUE IHE A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 TYR A 14 ? TYR A 12 . ? 3_644 ? 2 AC1 14 GLN A 21 ? GLN A 19 . ? 1_555 ? 3 AC1 14 GLY A 25 ? GLY A 23 . ? 1_555 ? 4 AC1 14 CYS A 27 ? CYS A 25 . ? 1_555 ? 5 AC1 14 LYS A 42 ? LYS A 40 . ? 3_644 ? 6 AC1 14 THR A 44 ? THR A 42 . ? 3_644 ? 7 AC1 14 GLY A 45 ? GLY A 43 . ? 3_644 ? 8 AC1 14 GLY A 66 ? GLY A 64 . ? 1_555 ? 9 AC1 14 GLY A 68 ? GLY A 66 . ? 1_555 ? 10 AC1 14 TYR A 69 ? TYR A 67 . ? 1_555 ? 11 AC1 14 ALA A 136 ? ALA A 134 . ? 1_555 ? 12 AC1 14 ASN A 163 ? ASN A 161 . ? 1_555 ? 13 AC1 14 HIS A 164 ? HIS A 162 . ? 1_555 ? 14 AC1 14 HOH C . ? HOH A 650 . ? 1_555 ? # _database_PDB_matrix.entry_id 1U9V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1U9V _atom_sites.fract_transf_matrix[1][1] 0.015823 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015823 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008787 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 ARG 2 0 ? ? ? A . n A 1 3 ALA 3 1 1 ALA ALA A . n A 1 4 PRO 4 2 2 PRO PRO A . n A 1 5 ASP 5 3 3 ASP ASP A . n A 1 6 SER 6 4 4 SER SER A . n A 1 7 VAL 7 5 5 VAL VAL A . n A 1 8 ASP 8 6 6 ASP ASP A . n A 1 9 TYR 9 7 7 TYR TYR A . n A 1 10 ARG 10 8 8 ARG ARG A . n A 1 11 LYS 11 9 9 LYS LYS A . n A 1 12 LYS 12 10 10 LYS LYS A . n A 1 13 GLY 13 11 11 GLY GLY A . n A 1 14 TYR 14 12 12 TYR TYR A . n A 1 15 VAL 15 13 13 VAL VAL A . n A 1 16 THR 16 14 14 THR THR A . n A 1 17 PRO 17 15 15 PRO PRO A . n A 1 18 VAL 18 16 16 VAL VAL A . n A 1 19 LYS 19 17 17 LYS LYS A . n A 1 20 ASN 20 18 18 ASN ASN A . n A 1 21 GLN 21 19 19 GLN GLN A . n A 1 22 GLY 22 20 20 GLY GLY A . n A 1 23 GLN 23 21 21 GLN GLN A . n A 1 24 CYS 24 22 22 CYS CYS A . n A 1 25 GLY 25 23 23 GLY GLY A . n A 1 26 SER 26 24 24 SER SER A . n A 1 27 CYS 27 25 25 CYS CYS A . n A 1 28 TRP 28 26 26 TRP TRP A . n A 1 29 ALA 29 27 27 ALA ALA A . n A 1 30 PHE 30 28 28 PHE PHE A . n A 1 31 SER 31 29 29 SER SER A . n A 1 32 SER 32 30 30 SER SER A . n A 1 33 VAL 33 31 31 VAL VAL A . n A 1 34 GLY 34 32 32 GLY GLY A . n A 1 35 ALA 35 33 33 ALA ALA A . n A 1 36 LEU 36 34 34 LEU LEU A . n A 1 37 GLU 37 35 35 GLU GLU A . n A 1 38 GLY 38 36 36 GLY GLY A . n A 1 39 GLN 39 37 37 GLN GLN A . n A 1 40 LEU 40 38 38 LEU LEU A . n A 1 41 LYS 41 39 39 LYS LYS A . n A 1 42 LYS 42 40 40 LYS LYS A . n A 1 43 LYS 43 41 41 LYS LYS A . n A 1 44 THR 44 42 42 THR THR A . n A 1 45 GLY 45 43 43 GLY GLY A . n A 1 46 LYS 46 44 44 LYS LYS A . n A 1 47 LEU 47 45 45 LEU LEU A . n A 1 48 LEU 48 46 46 LEU LEU A . n A 1 49 ASN 49 47 47 ASN ASN A . n A 1 50 LEU 50 48 48 LEU LEU A . n A 1 51 SER 51 49 49 SER SER A . n A 1 52 PRO 52 50 50 PRO PRO A . n A 1 53 GLN 53 51 51 GLN GLN A . n A 1 54 ASN 54 52 52 ASN ASN A . n A 1 55 LEU 55 53 53 LEU LEU A . n A 1 56 VAL 56 54 54 VAL VAL A . n A 1 57 ASP 57 55 55 ASP ASP A . n A 1 58 CYS 58 56 56 CYS CYS A . n A 1 59 VAL 59 57 57 VAL VAL A . n A 1 60 SER 60 58 58 SER SER A . n A 1 61 GLU 61 59 59 GLU GLU A . n A 1 62 ASN 62 60 60 ASN ASN A . n A 1 63 ASP 63 61 61 ASP ASP A . n A 1 64 GLY 64 62 62 GLY GLY A . n A 1 65 CYS 65 63 63 CYS CYS A . n A 1 66 GLY 66 64 64 GLY GLY A . n A 1 67 GLY 67 65 65 GLY GLY A . n A 1 68 GLY 68 66 66 GLY GLY A . n A 1 69 TYR 69 67 67 TYR TYR A . n A 1 70 MET 70 68 68 MET MET A . n A 1 71 THR 71 69 69 THR THR A . n A 1 72 ASN 72 70 70 ASN ASN A . n A 1 73 ALA 73 71 71 ALA ALA A . n A 1 74 PHE 74 72 72 PHE PHE A . n A 1 75 GLN 75 73 73 GLN GLN A . n A 1 76 TYR 76 74 74 TYR TYR A . n A 1 77 VAL 77 75 75 VAL VAL A . n A 1 78 GLN 78 76 76 GLN GLN A . n A 1 79 LYS 79 77 77 LYS LYS A . n A 1 80 ASN 80 78 78 ASN ASN A . n A 1 81 ARG 81 79 79 ARG ARG A . n A 1 82 GLY 82 80 80 GLY GLY A . n A 1 83 ILE 83 81 81 ILE ILE A . n A 1 84 ASP 84 82 82 ASP ASP A . n A 1 85 SER 85 83 83 SER SER A . n A 1 86 GLU 86 84 84 GLU GLU A . n A 1 87 ASP 87 85 85 ASP ASP A . n A 1 88 ALA 88 86 86 ALA ALA A . n A 1 89 TYR 89 87 87 TYR TYR A . n A 1 90 PRO 90 88 88 PRO PRO A . n A 1 91 TYR 91 89 89 TYR TYR A . n A 1 92 VAL 92 90 90 VAL VAL A . n A 1 93 GLY 93 91 91 GLY GLY A . n A 1 94 GLN 94 92 92 GLN GLN A . n A 1 95 GLU 95 93 93 GLU GLU A . n A 1 96 GLU 96 94 94 GLU GLU A . n A 1 97 SER 97 95 95 SER SER A . n A 1 98 CYS 98 96 96 CYS CYS A . n A 1 99 MET 99 97 97 MET MET A . n A 1 100 TYR 100 98 98 TYR TYR A . n A 1 101 ASN 101 99 99 ASN ASN A . n A 1 102 PRO 102 100 100 PRO PRO A . n A 1 103 THR 103 101 101 THR THR A . n A 1 104 GLY 104 102 102 GLY GLY A . n A 1 105 LYS 105 103 103 LYS LYS A . n A 1 106 ALA 106 104 104 ALA ALA A . n A 1 107 ALA 107 105 105 ALA ALA A . n A 1 108 LYS 108 106 106 LYS LYS A . n A 1 109 CYS 109 107 107 CYS CYS A . n A 1 110 ARG 110 108 108 ARG ARG A . n A 1 111 GLY 111 109 109 GLY GLY A . n A 1 112 TYR 112 110 110 TYR TYR A . n A 1 113 ARG 113 111 111 ARG ARG A . n A 1 114 GLU 114 112 112 GLU GLU A . n A 1 115 ILE 115 113 113 ILE ILE A . n A 1 116 PRO 116 114 114 PRO PRO A . n A 1 117 GLU 117 115 115 GLU GLU A . n A 1 118 GLY 118 116 116 GLY GLY A . n A 1 119 ASN 119 117 117 ASN ASN A . n A 1 120 GLU 120 118 118 GLU GLU A . n A 1 121 LYS 121 119 119 LYS LYS A . n A 1 122 ALA 122 120 120 ALA ALA A . n A 1 123 LEU 123 121 121 LEU LEU A . n A 1 124 LYS 124 122 122 LYS LYS A . n A 1 125 ARG 125 123 123 ARG ARG A . n A 1 126 ALA 126 124 124 ALA ALA A . n A 1 127 VAL 127 125 125 VAL VAL A . n A 1 128 ALA 128 126 126 ALA ALA A . n A 1 129 ARG 129 127 127 ARG ARG A . n A 1 130 VAL 130 128 128 VAL VAL A . n A 1 131 GLY 131 129 129 GLY GLY A . n A 1 132 PRO 132 130 130 PRO PRO A . n A 1 133 VAL 133 131 131 VAL VAL A . n A 1 134 SER 134 132 132 SER SER A . n A 1 135 VAL 135 133 133 VAL VAL A . n A 1 136 ALA 136 134 134 ALA ALA A . n A 1 137 ILE 137 135 135 ILE ILE A . n A 1 138 ASP 138 136 136 ASP ASP A . n A 1 139 ALA 139 137 137 ALA ALA A . n A 1 140 SER 140 138 138 SER SER A . n A 1 141 LEU 141 139 139 LEU LEU A . n A 1 142 THR 142 140 140 THR THR A . n A 1 143 SER 143 141 141 SER SER A . n A 1 144 PHE 144 142 142 PHE PHE A . n A 1 145 GLN 145 143 143 GLN GLN A . n A 1 146 PHE 146 144 144 PHE PHE A . n A 1 147 TYR 147 145 145 TYR TYR A . n A 1 148 SER 148 146 146 SER SER A . n A 1 149 LYS 149 147 147 LYS LYS A . n A 1 150 GLY 150 148 148 GLY GLY A . n A 1 151 VAL 151 149 149 VAL VAL A . n A 1 152 TYR 152 150 150 TYR TYR A . n A 1 153 TYR 153 151 151 TYR TYR A . n A 1 154 ASP 154 152 152 ASP ASP A . n A 1 155 GLU 155 153 153 GLU GLU A . n A 1 156 SER 156 154 154 SER SER A . n A 1 157 CYS 157 155 155 CYS CYS A . n A 1 158 ASN 158 156 156 ASN ASN A . n A 1 159 SER 159 157 157 SER SER A . n A 1 160 ASP 160 158 158 ASP ASP A . n A 1 161 ASN 161 159 159 ASN ASN A . n A 1 162 LEU 162 160 160 LEU LEU A . n A 1 163 ASN 163 161 161 ASN ASN A . n A 1 164 HIS 164 162 162 HIS HIS A . n A 1 165 ALA 165 163 163 ALA ALA A . n A 1 166 VAL 166 164 164 VAL VAL A . n A 1 167 LEU 167 165 165 LEU LEU A . n A 1 168 ALA 168 166 166 ALA ALA A . n A 1 169 VAL 169 167 167 VAL VAL A . n A 1 170 GLY 170 168 168 GLY GLY A . n A 1 171 TYR 171 169 169 TYR TYR A . n A 1 172 GLY 172 170 170 GLY GLY A . n A 1 173 ILE 173 171 171 ILE ILE A . n A 1 174 GLN 174 172 172 GLN GLN A . n A 1 175 LYS 175 173 173 LYS LYS A . n A 1 176 GLY 176 174 174 GLY GLY A . n A 1 177 ASN 177 175 175 ASN ASN A . n A 1 178 LYS 178 176 176 LYS LYS A . n A 1 179 HIS 179 177 177 HIS HIS A . n A 1 180 TRP 180 178 178 TRP TRP A . n A 1 181 ILE 181 179 179 ILE ILE A . n A 1 182 ILE 182 180 180 ILE ILE A . n A 1 183 LYS 183 181 181 LYS LYS A . n A 1 184 ASN 184 182 182 ASN ASN A . n A 1 185 SER 185 183 183 SER SER A . n A 1 186 TRP 186 184 184 TRP TRP A . n A 1 187 GLY 187 185 185 GLY GLY A . n A 1 188 GLU 188 186 186 GLU GLU A . n A 1 189 ASN 189 187 187 ASN ASN A . n A 1 190 TRP 190 188 188 TRP TRP A . n A 1 191 GLY 191 189 189 GLY GLY A . n A 1 192 ASN 192 190 190 ASN ASN A . n A 1 193 LYS 193 191 191 LYS LYS A . n A 1 194 GLY 194 192 192 GLY GLY A . n A 1 195 TYR 195 193 193 TYR TYR A . n A 1 196 ILE 196 194 194 ILE ILE A . n A 1 197 LEU 197 195 195 LEU LEU A . n A 1 198 MET 198 196 196 MET MET A . n A 1 199 ALA 199 197 197 ALA ALA A . n A 1 200 ARG 200 198 198 ARG ARG A . n A 1 201 ASN 201 199 199 ASN ASN A . n A 1 202 LYS 202 200 200 LYS LYS A . n A 1 203 ASN 203 201 201 ASN ASN A . n A 1 204 ASN 204 202 202 ASN ASN A . n A 1 205 ALA 205 203 203 ALA ALA A . n A 1 206 CYS 206 204 204 CYS CYS A . n A 1 207 GLY 207 205 205 GLY GLY A . n A 1 208 ILE 208 206 206 ILE ILE A . n A 1 209 ALA 209 207 207 ALA ALA A . n A 1 210 ASN 210 208 208 ASN ASN A . n A 1 211 LEU 211 209 209 LEU LEU A . n A 1 212 ALA 212 210 210 ALA ALA A . n A 1 213 SER 213 211 211 SER SER A . n A 1 214 PHE 214 212 212 PHE PHE A . n A 1 215 PRO 215 213 213 PRO PRO A . n A 1 216 LYS 216 214 214 LYS LYS A . n A 1 217 MET 217 215 215 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IHE 1 300 300 IHE IHE A . C 3 HOH 1 402 402 HOH HOH A . C 3 HOH 2 403 403 HOH HOH A . C 3 HOH 3 404 404 HOH HOH A . C 3 HOH 4 405 405 HOH HOH A . C 3 HOH 5 406 406 HOH HOH A . C 3 HOH 6 407 407 HOH HOH A . C 3 HOH 7 408 408 HOH HOH A . C 3 HOH 8 409 409 HOH HOH A . C 3 HOH 9 410 410 HOH HOH A . C 3 HOH 10 411 411 HOH HOH A . C 3 HOH 11 412 412 HOH HOH A . C 3 HOH 12 414 414 HOH HOH A . C 3 HOH 13 415 415 HOH HOH A . C 3 HOH 14 416 416 HOH HOH A . C 3 HOH 15 417 417 HOH HOH A . C 3 HOH 16 419 419 HOH HOH A . C 3 HOH 17 421 421 HOH HOH A . C 3 HOH 18 422 422 HOH HOH A . C 3 HOH 19 423 423 HOH HOH A . C 3 HOH 20 424 424 HOH HOH A . C 3 HOH 21 425 425 HOH HOH A . C 3 HOH 22 426 426 HOH HOH A . C 3 HOH 23 429 429 HOH HOH A . C 3 HOH 24 430 430 HOH HOH A . C 3 HOH 25 431 431 HOH HOH A . C 3 HOH 26 434 434 HOH HOH A . C 3 HOH 27 436 436 HOH HOH A . C 3 HOH 28 437 437 HOH HOH A . C 3 HOH 29 441 441 HOH HOH A . C 3 HOH 30 442 442 HOH HOH A . C 3 HOH 31 443 443 HOH HOH A . C 3 HOH 32 444 444 HOH HOH A . C 3 HOH 33 446 446 HOH HOH A . C 3 HOH 34 448 448 HOH HOH A . C 3 HOH 35 450 450 HOH HOH A . C 3 HOH 36 451 451 HOH HOH A . C 3 HOH 37 452 452 HOH HOH A . C 3 HOH 38 453 453 HOH HOH A . C 3 HOH 39 455 455 HOH HOH A . C 3 HOH 40 459 459 HOH HOH A . C 3 HOH 41 463 463 HOH HOH A . C 3 HOH 42 466 466 HOH HOH A . C 3 HOH 43 467 467 HOH HOH A . C 3 HOH 44 468 468 HOH HOH A . C 3 HOH 45 469 469 HOH HOH A . C 3 HOH 46 472 472 HOH HOH A . C 3 HOH 47 479 479 HOH HOH A . C 3 HOH 48 486 486 HOH HOH A . C 3 HOH 49 491 491 HOH HOH A . C 3 HOH 50 492 492 HOH HOH A . C 3 HOH 51 493 493 HOH HOH A . C 3 HOH 52 496 496 HOH HOH A . C 3 HOH 53 497 497 HOH HOH A . C 3 HOH 54 501 501 HOH HOH A . C 3 HOH 55 503 503 HOH HOH A . C 3 HOH 56 506 506 HOH HOH A . C 3 HOH 57 508 508 HOH HOH A . C 3 HOH 58 515 515 HOH HOH A . C 3 HOH 59 517 517 HOH HOH A . C 3 HOH 60 522 522 HOH HOH A . C 3 HOH 61 533 533 HOH HOH A . C 3 HOH 62 548 548 HOH HOH A . C 3 HOH 63 552 552 HOH HOH A . C 3 HOH 64 561 561 HOH HOH A . C 3 HOH 65 570 570 HOH HOH A . C 3 HOH 66 572 572 HOH HOH A . C 3 HOH 67 577 577 HOH HOH A . C 3 HOH 68 594 594 HOH HOH A . C 3 HOH 69 613 613 HOH HOH A . C 3 HOH 70 650 650 HOH HOH A . C 3 HOH 71 651 651 HOH HOH A . C 3 HOH 72 652 652 HOH HOH A . C 3 HOH 73 653 653 HOH HOH A . C 3 HOH 74 655 655 HOH HOH A . C 3 HOH 75 656 656 HOH HOH A . C 3 HOH 76 657 657 HOH HOH A . C 3 HOH 77 658 658 HOH HOH A . C 3 HOH 78 659 659 HOH HOH A . C 3 HOH 79 660 660 HOH HOH A . C 3 HOH 80 661 661 HOH HOH A . C 3 HOH 81 662 662 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-08-11 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 AUTOMAR 'data reduction' . ? 2 AMoRE phasing . ? 3 X-PLOR refinement 98 ? 4 XDS 'data reduction' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 21 ? ? -95.33 38.26 2 1 ARG A 79 ? ? 71.17 37.80 3 1 THR A 101 ? ? -57.49 179.01 4 1 SER A 146 ? ? -133.24 -39.85 5 1 ASN A 159 ? ? -116.47 77.16 6 1 LEU A 209 ? ? -143.93 57.05 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 41 ? CG ? A LYS 43 CG 2 1 Y 1 A LYS 41 ? CD ? A LYS 43 CD 3 1 Y 1 A LYS 41 ? CE ? A LYS 43 CE 4 1 Y 1 A LYS 41 ? NZ ? A LYS 43 NZ 5 1 Y 1 A LYS 77 ? CG ? A LYS 79 CG 6 1 Y 1 A LYS 77 ? CD ? A LYS 79 CD 7 1 Y 1 A LYS 77 ? CE ? A LYS 79 CE 8 1 Y 1 A LYS 77 ? NZ ? A LYS 79 NZ 9 1 Y 1 A LYS 119 ? CG ? A LYS 121 CG 10 1 Y 1 A LYS 119 ? CD ? A LYS 121 CD 11 1 Y 1 A LYS 119 ? CE ? A LYS 121 CE 12 1 Y 1 A LYS 119 ? NZ ? A LYS 121 NZ 13 1 Y 1 A ARG 127 ? CG ? A ARG 129 CG 14 1 Y 1 A ARG 127 ? CD ? A ARG 129 CD 15 1 Y 1 A ARG 127 ? NE ? A ARG 129 NE 16 1 Y 1 A ARG 127 ? CZ ? A ARG 129 CZ 17 1 Y 1 A ARG 127 ? NH1 ? A ARG 129 NH1 18 1 Y 1 A ARG 127 ? NH2 ? A ARG 129 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A ARG 0 ? A ARG 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 IHE C01 C N N 161 IHE C02 C N N 162 IHE N03 N N N 163 IHE C04 C N N 164 IHE C05 C N N 165 IHE N06 N N N 166 IHE C15 C N N 167 IHE C16 C N N 168 IHE C17 C N N 169 IHE N18 N Y N 170 IHE C19 C Y N 171 IHE N20 N Y N 172 IHE C21 C Y N 173 IHE N22 N Y N 174 IHE C23 C Y N 175 IHE N24 N Y N 176 IHE C25 C Y N 177 IHE C26 C Y N 178 IHE N28 N N N 179 IHE C29 C N N 180 IHE C30 C N N 181 IHE C31 C N N 182 IHE C32 C N N 183 IHE C33 C N N 184 IHE C34 C N N 185 IHE N35 N N N 186 IHE C27 C N N 187 IHE H011 H N N 188 IHE H012 H N N 189 IHE H021 H N N 190 IHE H022 H N N 191 IHE H041 H N N 192 IHE H042 H N N 193 IHE H051 H N N 194 IHE H052 H N N 195 IHE H151 H N N 196 IHE H152 H N N 197 IHE H153 H N N 198 IHE H161 H N N 199 IHE H162 H N N 200 IHE H171 H N N 201 IHE H172 H N N 202 IHE H19 H N N 203 IHE H28 H N N 204 IHE H29 H N N 205 IHE H301 H N N 206 IHE H302 H N N 207 IHE H311 H N N 208 IHE H312 H N N 209 IHE H321 H N N 210 IHE H322 H N N 211 IHE H331 H N N 212 IHE H332 H N N 213 IHE H341 H N N 214 IHE H342 H N N 215 ILE N N N N 216 ILE CA C N S 217 ILE C C N N 218 ILE O O N N 219 ILE CB C N S 220 ILE CG1 C N N 221 ILE CG2 C N N 222 ILE CD1 C N N 223 ILE OXT O N N 224 ILE H H N N 225 ILE H2 H N N 226 ILE HA H N N 227 ILE HB H N N 228 ILE HG12 H N N 229 ILE HG13 H N N 230 ILE HG21 H N N 231 ILE HG22 H N N 232 ILE HG23 H N N 233 ILE HD11 H N N 234 ILE HD12 H N N 235 ILE HD13 H N N 236 ILE HXT H N N 237 LEU N N N N 238 LEU CA C N S 239 LEU C C N N 240 LEU O O N N 241 LEU CB C N N 242 LEU CG C N N 243 LEU CD1 C N N 244 LEU CD2 C N N 245 LEU OXT O N N 246 LEU H H N N 247 LEU H2 H N N 248 LEU HA H N N 249 LEU HB2 H N N 250 LEU HB3 H N N 251 LEU HG H N N 252 LEU HD11 H N N 253 LEU HD12 H N N 254 LEU HD13 H N N 255 LEU HD21 H N N 256 LEU HD22 H N N 257 LEU HD23 H N N 258 LEU HXT H N N 259 LYS N N N N 260 LYS CA C N S 261 LYS C C N N 262 LYS O O N N 263 LYS CB C N N 264 LYS CG C N N 265 LYS CD C N N 266 LYS CE C N N 267 LYS NZ N N N 268 LYS OXT O N N 269 LYS H H N N 270 LYS H2 H N N 271 LYS HA H N N 272 LYS HB2 H N N 273 LYS HB3 H N N 274 LYS HG2 H N N 275 LYS HG3 H N N 276 LYS HD2 H N N 277 LYS HD3 H N N 278 LYS HE2 H N N 279 LYS HE3 H N N 280 LYS HZ1 H N N 281 LYS HZ2 H N N 282 LYS HZ3 H N N 283 LYS HXT H N N 284 MET N N N N 285 MET CA C N S 286 MET C C N N 287 MET O O N N 288 MET CB C N N 289 MET CG C N N 290 MET SD S N N 291 MET CE C N N 292 MET OXT O N N 293 MET H H N N 294 MET H2 H N N 295 MET HA H N N 296 MET HB2 H N N 297 MET HB3 H N N 298 MET HG2 H N N 299 MET HG3 H N N 300 MET HE1 H N N 301 MET HE2 H N N 302 MET HE3 H N N 303 MET HXT H N N 304 PHE N N N N 305 PHE CA C N S 306 PHE C C N N 307 PHE O O N N 308 PHE CB C N N 309 PHE CG C Y N 310 PHE CD1 C Y N 311 PHE CD2 C Y N 312 PHE CE1 C Y N 313 PHE CE2 C Y N 314 PHE CZ C Y N 315 PHE OXT O N N 316 PHE H H N N 317 PHE H2 H N N 318 PHE HA H N N 319 PHE HB2 H N N 320 PHE HB3 H N N 321 PHE HD1 H N N 322 PHE HD2 H N N 323 PHE HE1 H N N 324 PHE HE2 H N N 325 PHE HZ H N N 326 PHE HXT H N N 327 PRO N N N N 328 PRO CA C N S 329 PRO C C N N 330 PRO O O N N 331 PRO CB C N N 332 PRO CG C N N 333 PRO CD C N N 334 PRO OXT O N N 335 PRO H H N N 336 PRO HA H N N 337 PRO HB2 H N N 338 PRO HB3 H N N 339 PRO HG2 H N N 340 PRO HG3 H N N 341 PRO HD2 H N N 342 PRO HD3 H N N 343 PRO HXT H N N 344 SER N N N N 345 SER CA C N S 346 SER C C N N 347 SER O O N N 348 SER CB C N N 349 SER OG O N N 350 SER OXT O N N 351 SER H H N N 352 SER H2 H N N 353 SER HA H N N 354 SER HB2 H N N 355 SER HB3 H N N 356 SER HG H N N 357 SER HXT H N N 358 THR N N N N 359 THR CA C N S 360 THR C C N N 361 THR O O N N 362 THR CB C N R 363 THR OG1 O N N 364 THR CG2 C N N 365 THR OXT O N N 366 THR H H N N 367 THR H2 H N N 368 THR HA H N N 369 THR HB H N N 370 THR HG1 H N N 371 THR HG21 H N N 372 THR HG22 H N N 373 THR HG23 H N N 374 THR HXT H N N 375 TRP N N N N 376 TRP CA C N S 377 TRP C C N N 378 TRP O O N N 379 TRP CB C N N 380 TRP CG C Y N 381 TRP CD1 C Y N 382 TRP CD2 C Y N 383 TRP NE1 N Y N 384 TRP CE2 C Y N 385 TRP CE3 C Y N 386 TRP CZ2 C Y N 387 TRP CZ3 C Y N 388 TRP CH2 C Y N 389 TRP OXT O N N 390 TRP H H N N 391 TRP H2 H N N 392 TRP HA H N N 393 TRP HB2 H N N 394 TRP HB3 H N N 395 TRP HD1 H N N 396 TRP HE1 H N N 397 TRP HE3 H N N 398 TRP HZ2 H N N 399 TRP HZ3 H N N 400 TRP HH2 H N N 401 TRP HXT H N N 402 TYR N N N N 403 TYR CA C N S 404 TYR C C N N 405 TYR O O N N 406 TYR CB C N N 407 TYR CG C Y N 408 TYR CD1 C Y N 409 TYR CD2 C Y N 410 TYR CE1 C Y N 411 TYR CE2 C Y N 412 TYR CZ C Y N 413 TYR OH O N N 414 TYR OXT O N N 415 TYR H H N N 416 TYR H2 H N N 417 TYR HA H N N 418 TYR HB2 H N N 419 TYR HB3 H N N 420 TYR HD1 H N N 421 TYR HD2 H N N 422 TYR HE1 H N N 423 TYR HE2 H N N 424 TYR HH H N N 425 TYR HXT H N N 426 VAL N N N N 427 VAL CA C N S 428 VAL C C N N 429 VAL O O N N 430 VAL CB C N N 431 VAL CG1 C N N 432 VAL CG2 C N N 433 VAL OXT O N N 434 VAL H H N N 435 VAL H2 H N N 436 VAL HA H N N 437 VAL HB H N N 438 VAL HG11 H N N 439 VAL HG12 H N N 440 VAL HG13 H N N 441 VAL HG21 H N N 442 VAL HG22 H N N 443 VAL HG23 H N N 444 VAL HXT H N N 445 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 IHE C01 C04 sing N N 152 IHE C01 N06 sing N N 153 IHE C01 H011 sing N N 154 IHE C01 H012 sing N N 155 IHE C02 N03 sing N N 156 IHE C02 C05 sing N N 157 IHE C02 H021 sing N N 158 IHE C02 H022 sing N N 159 IHE N03 C04 sing N N 160 IHE N03 C15 sing N N 161 IHE C04 H041 sing N N 162 IHE C04 H042 sing N N 163 IHE C05 N06 sing N N 164 IHE C05 H051 sing N N 165 IHE C05 H052 sing N N 166 IHE N06 C16 sing N N 167 IHE C15 H151 sing N N 168 IHE C15 H152 sing N N 169 IHE C15 H153 sing N N 170 IHE C16 C17 sing N N 171 IHE C16 H161 sing N N 172 IHE C16 H162 sing N N 173 IHE C17 N18 sing N N 174 IHE C17 H171 sing N N 175 IHE C17 H172 sing N N 176 IHE N18 C19 sing Y N 177 IHE N18 C21 sing Y N 178 IHE C19 N20 doub Y N 179 IHE C19 H19 sing N N 180 IHE N20 C26 sing Y N 181 IHE C21 N22 doub Y N 182 IHE C21 C26 sing Y N 183 IHE N22 C23 sing Y N 184 IHE C23 N24 doub Y N 185 IHE C23 C27 sing N N 186 IHE N24 C25 sing Y N 187 IHE C25 C26 doub Y N 188 IHE C25 N28 sing N N 189 IHE N28 C29 sing N N 190 IHE N28 H28 sing N N 191 IHE C29 C30 sing N N 192 IHE C29 C34 sing N N 193 IHE C29 H29 sing N N 194 IHE C30 C31 sing N N 195 IHE C30 H301 sing N N 196 IHE C30 H302 sing N N 197 IHE C31 C32 sing N N 198 IHE C31 H311 sing N N 199 IHE C31 H312 sing N N 200 IHE C32 C33 sing N N 201 IHE C32 H321 sing N N 202 IHE C32 H322 sing N N 203 IHE C33 C34 sing N N 204 IHE C33 H331 sing N N 205 IHE C33 H332 sing N N 206 IHE C34 H341 sing N N 207 IHE C34 H342 sing N N 208 IHE N35 C27 trip N N 209 ILE N CA sing N N 210 ILE N H sing N N 211 ILE N H2 sing N N 212 ILE CA C sing N N 213 ILE CA CB sing N N 214 ILE CA HA sing N N 215 ILE C O doub N N 216 ILE C OXT sing N N 217 ILE CB CG1 sing N N 218 ILE CB CG2 sing N N 219 ILE CB HB sing N N 220 ILE CG1 CD1 sing N N 221 ILE CG1 HG12 sing N N 222 ILE CG1 HG13 sing N N 223 ILE CG2 HG21 sing N N 224 ILE CG2 HG22 sing N N 225 ILE CG2 HG23 sing N N 226 ILE CD1 HD11 sing N N 227 ILE CD1 HD12 sing N N 228 ILE CD1 HD13 sing N N 229 ILE OXT HXT sing N N 230 LEU N CA sing N N 231 LEU N H sing N N 232 LEU N H2 sing N N 233 LEU CA C sing N N 234 LEU CA CB sing N N 235 LEU CA HA sing N N 236 LEU C O doub N N 237 LEU C OXT sing N N 238 LEU CB CG sing N N 239 LEU CB HB2 sing N N 240 LEU CB HB3 sing N N 241 LEU CG CD1 sing N N 242 LEU CG CD2 sing N N 243 LEU CG HG sing N N 244 LEU CD1 HD11 sing N N 245 LEU CD1 HD12 sing N N 246 LEU CD1 HD13 sing N N 247 LEU CD2 HD21 sing N N 248 LEU CD2 HD22 sing N N 249 LEU CD2 HD23 sing N N 250 LEU OXT HXT sing N N 251 LYS N CA sing N N 252 LYS N H sing N N 253 LYS N H2 sing N N 254 LYS CA C sing N N 255 LYS CA CB sing N N 256 LYS CA HA sing N N 257 LYS C O doub N N 258 LYS C OXT sing N N 259 LYS CB CG sing N N 260 LYS CB HB2 sing N N 261 LYS CB HB3 sing N N 262 LYS CG CD sing N N 263 LYS CG HG2 sing N N 264 LYS CG HG3 sing N N 265 LYS CD CE sing N N 266 LYS CD HD2 sing N N 267 LYS CD HD3 sing N N 268 LYS CE NZ sing N N 269 LYS CE HE2 sing N N 270 LYS CE HE3 sing N N 271 LYS NZ HZ1 sing N N 272 LYS NZ HZ2 sing N N 273 LYS NZ HZ3 sing N N 274 LYS OXT HXT sing N N 275 MET N CA sing N N 276 MET N H sing N N 277 MET N H2 sing N N 278 MET CA C sing N N 279 MET CA CB sing N N 280 MET CA HA sing N N 281 MET C O doub N N 282 MET C OXT sing N N 283 MET CB CG sing N N 284 MET CB HB2 sing N N 285 MET CB HB3 sing N N 286 MET CG SD sing N N 287 MET CG HG2 sing N N 288 MET CG HG3 sing N N 289 MET SD CE sing N N 290 MET CE HE1 sing N N 291 MET CE HE2 sing N N 292 MET CE HE3 sing N N 293 MET OXT HXT sing N N 294 PHE N CA sing N N 295 PHE N H sing N N 296 PHE N H2 sing N N 297 PHE CA C sing N N 298 PHE CA CB sing N N 299 PHE CA HA sing N N 300 PHE C O doub N N 301 PHE C OXT sing N N 302 PHE CB CG sing N N 303 PHE CB HB2 sing N N 304 PHE CB HB3 sing N N 305 PHE CG CD1 doub Y N 306 PHE CG CD2 sing Y N 307 PHE CD1 CE1 sing Y N 308 PHE CD1 HD1 sing N N 309 PHE CD2 CE2 doub Y N 310 PHE CD2 HD2 sing N N 311 PHE CE1 CZ doub Y N 312 PHE CE1 HE1 sing N N 313 PHE CE2 CZ sing Y N 314 PHE CE2 HE2 sing N N 315 PHE CZ HZ sing N N 316 PHE OXT HXT sing N N 317 PRO N CA sing N N 318 PRO N CD sing N N 319 PRO N H sing N N 320 PRO CA C sing N N 321 PRO CA CB sing N N 322 PRO CA HA sing N N 323 PRO C O doub N N 324 PRO C OXT sing N N 325 PRO CB CG sing N N 326 PRO CB HB2 sing N N 327 PRO CB HB3 sing N N 328 PRO CG CD sing N N 329 PRO CG HG2 sing N N 330 PRO CG HG3 sing N N 331 PRO CD HD2 sing N N 332 PRO CD HD3 sing N N 333 PRO OXT HXT sing N N 334 SER N CA sing N N 335 SER N H sing N N 336 SER N H2 sing N N 337 SER CA C sing N N 338 SER CA CB sing N N 339 SER CA HA sing N N 340 SER C O doub N N 341 SER C OXT sing N N 342 SER CB OG sing N N 343 SER CB HB2 sing N N 344 SER CB HB3 sing N N 345 SER OG HG sing N N 346 SER OXT HXT sing N N 347 THR N CA sing N N 348 THR N H sing N N 349 THR N H2 sing N N 350 THR CA C sing N N 351 THR CA CB sing N N 352 THR CA HA sing N N 353 THR C O doub N N 354 THR C OXT sing N N 355 THR CB OG1 sing N N 356 THR CB CG2 sing N N 357 THR CB HB sing N N 358 THR OG1 HG1 sing N N 359 THR CG2 HG21 sing N N 360 THR CG2 HG22 sing N N 361 THR CG2 HG23 sing N N 362 THR OXT HXT sing N N 363 TRP N CA sing N N 364 TRP N H sing N N 365 TRP N H2 sing N N 366 TRP CA C sing N N 367 TRP CA CB sing N N 368 TRP CA HA sing N N 369 TRP C O doub N N 370 TRP C OXT sing N N 371 TRP CB CG sing N N 372 TRP CB HB2 sing N N 373 TRP CB HB3 sing N N 374 TRP CG CD1 doub Y N 375 TRP CG CD2 sing Y N 376 TRP CD1 NE1 sing Y N 377 TRP CD1 HD1 sing N N 378 TRP CD2 CE2 doub Y N 379 TRP CD2 CE3 sing Y N 380 TRP NE1 CE2 sing Y N 381 TRP NE1 HE1 sing N N 382 TRP CE2 CZ2 sing Y N 383 TRP CE3 CZ3 doub Y N 384 TRP CE3 HE3 sing N N 385 TRP CZ2 CH2 doub Y N 386 TRP CZ2 HZ2 sing N N 387 TRP CZ3 CH2 sing Y N 388 TRP CZ3 HZ3 sing N N 389 TRP CH2 HH2 sing N N 390 TRP OXT HXT sing N N 391 TYR N CA sing N N 392 TYR N H sing N N 393 TYR N H2 sing N N 394 TYR CA C sing N N 395 TYR CA CB sing N N 396 TYR CA HA sing N N 397 TYR C O doub N N 398 TYR C OXT sing N N 399 TYR CB CG sing N N 400 TYR CB HB2 sing N N 401 TYR CB HB3 sing N N 402 TYR CG CD1 doub Y N 403 TYR CG CD2 sing Y N 404 TYR CD1 CE1 sing Y N 405 TYR CD1 HD1 sing N N 406 TYR CD2 CE2 doub Y N 407 TYR CD2 HD2 sing N N 408 TYR CE1 CZ doub Y N 409 TYR CE1 HE1 sing N N 410 TYR CE2 CZ sing Y N 411 TYR CE2 HE2 sing N N 412 TYR CZ OH sing N N 413 TYR OH HH sing N N 414 TYR OXT HXT sing N N 415 VAL N CA sing N N 416 VAL N H sing N N 417 VAL N H2 sing N N 418 VAL CA C sing N N 419 VAL CA CB sing N N 420 VAL CA HA sing N N 421 VAL C O doub N N 422 VAL C OXT sing N N 423 VAL CB CG1 sing N N 424 VAL CB CG2 sing N N 425 VAL CB HB sing N N 426 VAL CG1 HG11 sing N N 427 VAL CG1 HG12 sing N N 428 VAL CG1 HG13 sing N N 429 VAL CG2 HG21 sing N N 430 VAL CG2 HG22 sing N N 431 VAL CG2 HG23 sing N N 432 VAL OXT HXT sing N N 433 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '6-(CYCLOHEXYLAMINO)-9-[2-(4-METHYLPIPERAZIN-1-YL)-ETHYL]-9H-PURINE-2-CARBONITRILE' IHE 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MEM _pdbx_initial_refinement_model.details 'PDB ENTRY 1MEM' #