data_1U9W # _entry.id 1U9W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1U9W RCSB RCSB023426 WWPDB D_1000023426 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1MEM . unspecified PDB 1ATK . unspecified PDB 1U9V 'the same protein in complex with the covalent inhibitor NVP-ABE854' unspecified PDB 1U9X 'the same protein in complex with the covalent inhibitor NVP-ABJ688' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1U9W _pdbx_database_status.recvd_initial_deposition_date 2004-08-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Cowan-Jacob, S.W.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Novel purine nitrile derived inhibitors of the cysteine protease cathepsin K' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 47 _citation.page_first 5833 _citation.page_last 5836 _citation.year 2004 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15537340 _citation.pdbx_database_id_DOI 10.1021/jm0493111 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Altmann, E.' 1 primary 'Cowan-Jacob, S.W.' 2 primary 'Missbach, M.' 3 # _cell.entry_id 1U9W _cell.length_a 63.600 _cell.length_b 63.600 _cell.length_c 116.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1U9W _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cathepsin K' 23737.727 1 3.4.22.38 ? ? ? 2 non-polymer syn '9-CYCLOPENTYL-6-[2-(3-IMIDAZOL-1-YL-PROPOXY)-PHENYLAMINO]-9H-PURINE-2-CARBONITRILE' 428.490 1 ? ? ? ? 3 water nat water 18.015 67 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cathepsin O, Cathepsin X, Cathepsin O2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_seq_one_letter_code_can ;GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 ALA n 1 4 PRO n 1 5 ASP n 1 6 SER n 1 7 VAL n 1 8 ASP n 1 9 TYR n 1 10 ARG n 1 11 LYS n 1 12 LYS n 1 13 GLY n 1 14 TYR n 1 15 VAL n 1 16 THR n 1 17 PRO n 1 18 VAL n 1 19 LYS n 1 20 ASN n 1 21 GLN n 1 22 GLY n 1 23 GLN n 1 24 CYS n 1 25 GLY n 1 26 SER n 1 27 CYS n 1 28 TRP n 1 29 ALA n 1 30 PHE n 1 31 SER n 1 32 SER n 1 33 VAL n 1 34 GLY n 1 35 ALA n 1 36 LEU n 1 37 GLU n 1 38 GLY n 1 39 GLN n 1 40 LEU n 1 41 LYS n 1 42 LYS n 1 43 LYS n 1 44 THR n 1 45 GLY n 1 46 LYS n 1 47 LEU n 1 48 LEU n 1 49 ASN n 1 50 LEU n 1 51 SER n 1 52 PRO n 1 53 GLN n 1 54 ASN n 1 55 LEU n 1 56 VAL n 1 57 ASP n 1 58 CYS n 1 59 VAL n 1 60 SER n 1 61 GLU n 1 62 ASN n 1 63 ASP n 1 64 GLY n 1 65 CYS n 1 66 GLY n 1 67 GLY n 1 68 GLY n 1 69 TYR n 1 70 MET n 1 71 THR n 1 72 ASN n 1 73 ALA n 1 74 PHE n 1 75 GLN n 1 76 TYR n 1 77 VAL n 1 78 GLN n 1 79 LYS n 1 80 ASN n 1 81 ARG n 1 82 GLY n 1 83 ILE n 1 84 ASP n 1 85 SER n 1 86 GLU n 1 87 ASP n 1 88 ALA n 1 89 TYR n 1 90 PRO n 1 91 TYR n 1 92 VAL n 1 93 GLY n 1 94 GLN n 1 95 GLU n 1 96 GLU n 1 97 SER n 1 98 CYS n 1 99 MET n 1 100 TYR n 1 101 ASN n 1 102 PRO n 1 103 THR n 1 104 GLY n 1 105 LYS n 1 106 ALA n 1 107 ALA n 1 108 LYS n 1 109 CYS n 1 110 ARG n 1 111 GLY n 1 112 TYR n 1 113 ARG n 1 114 GLU n 1 115 ILE n 1 116 PRO n 1 117 GLU n 1 118 GLY n 1 119 ASN n 1 120 GLU n 1 121 LYS n 1 122 ALA n 1 123 LEU n 1 124 LYS n 1 125 ARG n 1 126 ALA n 1 127 VAL n 1 128 ALA n 1 129 ARG n 1 130 VAL n 1 131 GLY n 1 132 PRO n 1 133 VAL n 1 134 SER n 1 135 VAL n 1 136 ALA n 1 137 ILE n 1 138 ASP n 1 139 ALA n 1 140 SER n 1 141 LEU n 1 142 THR n 1 143 SER n 1 144 PHE n 1 145 GLN n 1 146 PHE n 1 147 TYR n 1 148 SER n 1 149 LYS n 1 150 GLY n 1 151 VAL n 1 152 TYR n 1 153 TYR n 1 154 ASP n 1 155 GLU n 1 156 SER n 1 157 CYS n 1 158 ASN n 1 159 SER n 1 160 ASP n 1 161 ASN n 1 162 LEU n 1 163 ASN n 1 164 HIS n 1 165 ALA n 1 166 VAL n 1 167 LEU n 1 168 ALA n 1 169 VAL n 1 170 GLY n 1 171 TYR n 1 172 GLY n 1 173 ILE n 1 174 GLN n 1 175 LYS n 1 176 GLY n 1 177 ASN n 1 178 LYS n 1 179 HIS n 1 180 TRP n 1 181 ILE n 1 182 ILE n 1 183 LYS n 1 184 ASN n 1 185 SER n 1 186 TRP n 1 187 GLY n 1 188 GLU n 1 189 ASN n 1 190 TRP n 1 191 GLY n 1 192 ASN n 1 193 LYS n 1 194 GLY n 1 195 TYR n 1 196 ILE n 1 197 LEU n 1 198 MET n 1 199 ALA n 1 200 ARG n 1 201 ASN n 1 202 LYS n 1 203 ASN n 1 204 ASN n 1 205 ALA n 1 206 CYS n 1 207 GLY n 1 208 ILE n 1 209 ALA n 1 210 ASN n 1 211 LEU n 1 212 ALA n 1 213 SER n 1 214 PHE n 1 215 PRO n 1 216 LYS n 1 217 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus Spodoptera _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line SF21 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Baculovirus _entity_src_gen.pdbx_host_org_vector pMBac-HC9 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATK_HUMAN _struct_ref.pdbx_db_accession P43235 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _struct_ref.pdbx_align_begin 113 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1U9W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 217 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43235 _struct_ref_seq.db_align_beg 113 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 329 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 215 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 IHI non-polymer . '9-CYCLOPENTYL-6-[2-(3-IMIDAZOL-1-YL-PROPOXY)-PHENYLAMINO]-9H-PURINE-2-CARBONITRILE' NVP-ABI491 'C23 H24 N8 O' 428.490 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1U9W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 49. _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'PEG 4000, Tris, Lithium sulfate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 294 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2000-01-14 _diffrn_detector.details MONOCHROMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR571' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1U9W _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 29.4 _reflns.d_resolution_high 2.3 _reflns.number_obs 11107 _reflns.number_all 11107 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_Rsym_value 0.113 _reflns.pdbx_netI_over_sigmaI 26.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.31 _reflns_shell.d_res_low 2.4 _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_obs 0.399 _reflns_shell.pdbx_Rsym_value 0.399 _reflns_shell.meanI_over_sigI_obs 6.6 _reflns_shell.pdbx_redundancy 10.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1U9W _refine.ls_number_reflns_obs 11021 _refine.ls_number_reflns_all 11021 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 100000. _refine.pdbx_data_cutoff_low_absF 0.0 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs 98.7 _refine.ls_R_factor_obs 0.169 _refine.ls_R_factor_all 0.172 _refine.ls_R_factor_R_work 0.169 _refine.ls_R_factor_R_free 0.226 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 510 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1654 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1746 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.596 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 25.721 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.857 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 25 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.33 _refine_ls_shell.number_reflns_R_work 289 _refine_ls_shell.R_factor_R_work 0.16 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.141 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 12 _refine_ls_shell.number_reflns_obs 289 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PARHCSDX.PRO _pdbx_xplor_file.topol_file TOPHCSDX.PRO _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 1U9W _struct.title 'Crystal Structure of the Cysteine Protease Human Cathepsin K in Complex with the Covalent Inhibitor NVP-ABI491' _struct.pdbx_descriptor 'Cathepsin K (E.C.3.4.22.38)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1U9W _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, SULFHYDRYL PROTEINASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 26 ? GLY A 45 ? SER A 24 GLY A 43 1 ? 20 HELX_P HELX_P2 2 SER A 51 ? VAL A 59 ? SER A 49 VAL A 57 1 ? 9 HELX_P HELX_P3 3 ASP A 63 ? GLY A 67 ? ASP A 61 GLY A 65 5 ? 5 HELX_P HELX_P4 4 TYR A 69 ? ASN A 80 ? TYR A 67 ASN A 78 1 ? 12 HELX_P HELX_P5 5 ASN A 119 ? VAL A 130 ? ASN A 117 VAL A 128 1 ? 12 HELX_P HELX_P6 6 LEU A 141 ? PHE A 146 ? LEU A 139 PHE A 144 1 ? 6 HELX_P HELX_P7 7 ASN A 204 ? ILE A 208 ? ASN A 202 ILE A 206 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 65 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.025 ? disulf2 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 56 A CYS 96 1_555 ? ? ? ? ? ? ? 2.361 ? disulf3 disulf ? ? A CYS 157 SG ? ? ? 1_555 A CYS 206 SG ? ? A CYS 155 A CYS 204 1_555 ? ? ? ? ? ? ? 2.373 ? covale1 covale ? ? B IHI . C26 ? ? ? 1_555 A CYS 27 SG ? ? A IHI 300 A CYS 25 1_555 ? ? ? ? ? ? ? 1.686 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 7 ? ASP A 8 ? VAL A 5 ASP A 6 A 2 HIS A 164 ? GLN A 174 ? HIS A 162 GLN A 172 A 3 VAL A 133 ? ILE A 137 ? VAL A 131 ILE A 135 B 1 VAL A 7 ? ASP A 8 ? VAL A 5 ASP A 6 B 2 HIS A 164 ? GLN A 174 ? HIS A 162 GLN A 172 B 3 ASN A 177 ? LYS A 183 ? ASN A 175 LYS A 181 B 4 TYR A 195 ? ALA A 199 ? TYR A 193 ALA A 197 B 5 VAL A 151 ? TYR A 152 ? VAL A 149 TYR A 150 C 1 ILE A 83 ? ASP A 84 ? ILE A 81 ASP A 82 C 2 LYS A 105 ? ALA A 107 ? LYS A 103 ALA A 105 D 1 TYR A 112 ? GLU A 114 ? TYR A 110 GLU A 112 D 2 SER A 213 ? PRO A 215 ? SER A 211 PRO A 213 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 7 ? N VAL A 5 O TYR A 171 ? O TYR A 169 A 2 3 O ALA A 168 ? O ALA A 166 N VAL A 133 ? N VAL A 131 B 1 2 N VAL A 7 ? N VAL A 5 O TYR A 171 ? O TYR A 169 B 2 3 N LEU A 167 ? N LEU A 165 O LYS A 183 ? O LYS A 181 B 3 4 N ILE A 182 ? N ILE A 180 O ILE A 196 ? O ILE A 194 B 4 5 O LEU A 197 ? O LEU A 195 N TYR A 152 ? N TYR A 150 C 1 2 N ILE A 83 ? N ILE A 81 O ALA A 106 ? O ALA A 104 D 1 2 N ARG A 113 ? N ARG A 111 O PHE A 214 ? O PHE A 212 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE IHI A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 GLN A 21 ? GLN A 19 . ? 1_555 ? 2 AC1 11 GLY A 25 ? GLY A 23 . ? 1_555 ? 3 AC1 11 SER A 26 ? SER A 24 . ? 1_555 ? 4 AC1 11 CYS A 27 ? CYS A 25 . ? 1_555 ? 5 AC1 11 LYS A 42 ? LYS A 40 . ? 3_644 ? 6 AC1 11 THR A 44 ? THR A 42 . ? 3_644 ? 7 AC1 11 GLY A 45 ? GLY A 43 . ? 3_644 ? 8 AC1 11 GLY A 66 ? GLY A 64 . ? 1_555 ? 9 AC1 11 GLY A 68 ? GLY A 66 . ? 1_555 ? 10 AC1 11 ASN A 163 ? ASN A 161 . ? 1_555 ? 11 AC1 11 HIS A 164 ? HIS A 162 . ? 1_555 ? # _database_PDB_matrix.entry_id 1U9W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1U9W _atom_sites.fract_transf_matrix[1][1] 0.015723 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015723 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008591 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 ARG 2 0 0 ARG ARG A . n A 1 3 ALA 3 1 1 ALA ALA A . n A 1 4 PRO 4 2 2 PRO PRO A . n A 1 5 ASP 5 3 3 ASP ASP A . n A 1 6 SER 6 4 4 SER SER A . n A 1 7 VAL 7 5 5 VAL VAL A . n A 1 8 ASP 8 6 6 ASP ASP A . n A 1 9 TYR 9 7 7 TYR TYR A . n A 1 10 ARG 10 8 8 ARG ARG A . n A 1 11 LYS 11 9 9 LYS LYS A . n A 1 12 LYS 12 10 10 LYS LYS A . n A 1 13 GLY 13 11 11 GLY GLY A . n A 1 14 TYR 14 12 12 TYR TYR A . n A 1 15 VAL 15 13 13 VAL VAL A . n A 1 16 THR 16 14 14 THR THR A . n A 1 17 PRO 17 15 15 PRO PRO A . n A 1 18 VAL 18 16 16 VAL VAL A . n A 1 19 LYS 19 17 17 LYS LYS A . n A 1 20 ASN 20 18 18 ASN ASN A . n A 1 21 GLN 21 19 19 GLN GLN A . n A 1 22 GLY 22 20 20 GLY GLY A . n A 1 23 GLN 23 21 21 GLN GLN A . n A 1 24 CYS 24 22 22 CYS CYS A . n A 1 25 GLY 25 23 23 GLY GLY A . n A 1 26 SER 26 24 24 SER SER A . n A 1 27 CYS 27 25 25 CYS CYS A . n A 1 28 TRP 28 26 26 TRP TRP A . n A 1 29 ALA 29 27 27 ALA ALA A . n A 1 30 PHE 30 28 28 PHE PHE A . n A 1 31 SER 31 29 29 SER SER A . n A 1 32 SER 32 30 30 SER SER A . n A 1 33 VAL 33 31 31 VAL VAL A . n A 1 34 GLY 34 32 32 GLY GLY A . n A 1 35 ALA 35 33 33 ALA ALA A . n A 1 36 LEU 36 34 34 LEU LEU A . n A 1 37 GLU 37 35 35 GLU GLU A . n A 1 38 GLY 38 36 36 GLY GLY A . n A 1 39 GLN 39 37 37 GLN GLN A . n A 1 40 LEU 40 38 38 LEU LEU A . n A 1 41 LYS 41 39 39 LYS LYS A . n A 1 42 LYS 42 40 40 LYS LYS A . n A 1 43 LYS 43 41 41 LYS LYS A . n A 1 44 THR 44 42 42 THR THR A . n A 1 45 GLY 45 43 43 GLY GLY A . n A 1 46 LYS 46 44 44 LYS LYS A . n A 1 47 LEU 47 45 45 LEU LEU A . n A 1 48 LEU 48 46 46 LEU LEU A . n A 1 49 ASN 49 47 47 ASN ASN A . n A 1 50 LEU 50 48 48 LEU LEU A . n A 1 51 SER 51 49 49 SER SER A . n A 1 52 PRO 52 50 50 PRO PRO A . n A 1 53 GLN 53 51 51 GLN GLN A . n A 1 54 ASN 54 52 52 ASN ASN A . n A 1 55 LEU 55 53 53 LEU LEU A . n A 1 56 VAL 56 54 54 VAL VAL A . n A 1 57 ASP 57 55 55 ASP ASP A . n A 1 58 CYS 58 56 56 CYS CYS A . n A 1 59 VAL 59 57 57 VAL VAL A . n A 1 60 SER 60 58 58 SER SER A . n A 1 61 GLU 61 59 59 GLU GLU A . n A 1 62 ASN 62 60 60 ASN ASN A . n A 1 63 ASP 63 61 61 ASP ASP A . n A 1 64 GLY 64 62 62 GLY GLY A . n A 1 65 CYS 65 63 63 CYS CYS A . n A 1 66 GLY 66 64 64 GLY GLY A . n A 1 67 GLY 67 65 65 GLY GLY A . n A 1 68 GLY 68 66 66 GLY GLY A . n A 1 69 TYR 69 67 67 TYR TYR A . n A 1 70 MET 70 68 68 MET MET A . n A 1 71 THR 71 69 69 THR THR A . n A 1 72 ASN 72 70 70 ASN ASN A . n A 1 73 ALA 73 71 71 ALA ALA A . n A 1 74 PHE 74 72 72 PHE PHE A . n A 1 75 GLN 75 73 73 GLN GLN A . n A 1 76 TYR 76 74 74 TYR TYR A . n A 1 77 VAL 77 75 75 VAL VAL A . n A 1 78 GLN 78 76 76 GLN GLN A . n A 1 79 LYS 79 77 77 LYS LYS A . n A 1 80 ASN 80 78 78 ASN ASN A . n A 1 81 ARG 81 79 79 ARG ARG A . n A 1 82 GLY 82 80 80 GLY GLY A . n A 1 83 ILE 83 81 81 ILE ILE A . n A 1 84 ASP 84 82 82 ASP ASP A . n A 1 85 SER 85 83 83 SER SER A . n A 1 86 GLU 86 84 84 GLU GLU A . n A 1 87 ASP 87 85 85 ASP ASP A . n A 1 88 ALA 88 86 86 ALA ALA A . n A 1 89 TYR 89 87 87 TYR TYR A . n A 1 90 PRO 90 88 88 PRO PRO A . n A 1 91 TYR 91 89 89 TYR TYR A . n A 1 92 VAL 92 90 90 VAL VAL A . n A 1 93 GLY 93 91 91 GLY GLY A . n A 1 94 GLN 94 92 92 GLN GLN A . n A 1 95 GLU 95 93 93 GLU GLU A . n A 1 96 GLU 96 94 94 GLU GLU A . n A 1 97 SER 97 95 95 SER SER A . n A 1 98 CYS 98 96 96 CYS CYS A . n A 1 99 MET 99 97 97 MET MET A . n A 1 100 TYR 100 98 98 TYR TYR A . n A 1 101 ASN 101 99 99 ASN ASN A . n A 1 102 PRO 102 100 100 PRO PRO A . n A 1 103 THR 103 101 101 THR THR A . n A 1 104 GLY 104 102 102 GLY GLY A . n A 1 105 LYS 105 103 103 LYS LYS A . n A 1 106 ALA 106 104 104 ALA ALA A . n A 1 107 ALA 107 105 105 ALA ALA A . n A 1 108 LYS 108 106 106 LYS LYS A . n A 1 109 CYS 109 107 107 CYS CYS A . n A 1 110 ARG 110 108 108 ARG ARG A . n A 1 111 GLY 111 109 109 GLY GLY A . n A 1 112 TYR 112 110 110 TYR TYR A . n A 1 113 ARG 113 111 111 ARG ARG A . n A 1 114 GLU 114 112 112 GLU GLU A . n A 1 115 ILE 115 113 113 ILE ILE A . n A 1 116 PRO 116 114 114 PRO PRO A . n A 1 117 GLU 117 115 115 GLU GLU A . n A 1 118 GLY 118 116 116 GLY GLY A . n A 1 119 ASN 119 117 117 ASN ASN A . n A 1 120 GLU 120 118 118 GLU GLU A . n A 1 121 LYS 121 119 119 LYS LYS A . n A 1 122 ALA 122 120 120 ALA ALA A . n A 1 123 LEU 123 121 121 LEU LEU A . n A 1 124 LYS 124 122 122 LYS LYS A . n A 1 125 ARG 125 123 123 ARG ARG A . n A 1 126 ALA 126 124 124 ALA ALA A . n A 1 127 VAL 127 125 125 VAL VAL A . n A 1 128 ALA 128 126 126 ALA ALA A . n A 1 129 ARG 129 127 127 ARG ARG A . n A 1 130 VAL 130 128 128 VAL VAL A . n A 1 131 GLY 131 129 129 GLY GLY A . n A 1 132 PRO 132 130 130 PRO PRO A . n A 1 133 VAL 133 131 131 VAL VAL A . n A 1 134 SER 134 132 132 SER SER A . n A 1 135 VAL 135 133 133 VAL VAL A . n A 1 136 ALA 136 134 134 ALA ALA A . n A 1 137 ILE 137 135 135 ILE ILE A . n A 1 138 ASP 138 136 136 ASP ASP A . n A 1 139 ALA 139 137 137 ALA ALA A . n A 1 140 SER 140 138 138 SER SER A . n A 1 141 LEU 141 139 139 LEU LEU A . n A 1 142 THR 142 140 140 THR THR A . n A 1 143 SER 143 141 141 SER SER A . n A 1 144 PHE 144 142 142 PHE PHE A . n A 1 145 GLN 145 143 143 GLN GLN A . n A 1 146 PHE 146 144 144 PHE PHE A . n A 1 147 TYR 147 145 145 TYR TYR A . n A 1 148 SER 148 146 146 SER SER A . n A 1 149 LYS 149 147 147 LYS LYS A . n A 1 150 GLY 150 148 148 GLY GLY A . n A 1 151 VAL 151 149 149 VAL VAL A . n A 1 152 TYR 152 150 150 TYR TYR A . n A 1 153 TYR 153 151 151 TYR TYR A . n A 1 154 ASP 154 152 152 ASP ASP A . n A 1 155 GLU 155 153 153 GLU GLU A . n A 1 156 SER 156 154 154 SER SER A . n A 1 157 CYS 157 155 155 CYS CYS A . n A 1 158 ASN 158 156 156 ASN ASN A . n A 1 159 SER 159 157 157 SER SER A . n A 1 160 ASP 160 158 158 ASP ASP A . n A 1 161 ASN 161 159 159 ASN ASN A . n A 1 162 LEU 162 160 160 LEU LEU A . n A 1 163 ASN 163 161 161 ASN ASN A . n A 1 164 HIS 164 162 162 HIS HIS A . n A 1 165 ALA 165 163 163 ALA ALA A . n A 1 166 VAL 166 164 164 VAL VAL A . n A 1 167 LEU 167 165 165 LEU LEU A . n A 1 168 ALA 168 166 166 ALA ALA A . n A 1 169 VAL 169 167 167 VAL VAL A . n A 1 170 GLY 170 168 168 GLY GLY A . n A 1 171 TYR 171 169 169 TYR TYR A . n A 1 172 GLY 172 170 170 GLY GLY A . n A 1 173 ILE 173 171 171 ILE ILE A . n A 1 174 GLN 174 172 172 GLN GLN A . n A 1 175 LYS 175 173 173 LYS LYS A . n A 1 176 GLY 176 174 174 GLY GLY A . n A 1 177 ASN 177 175 175 ASN ASN A . n A 1 178 LYS 178 176 176 LYS LYS A . n A 1 179 HIS 179 177 177 HIS HIS A . n A 1 180 TRP 180 178 178 TRP TRP A . n A 1 181 ILE 181 179 179 ILE ILE A . n A 1 182 ILE 182 180 180 ILE ILE A . n A 1 183 LYS 183 181 181 LYS LYS A . n A 1 184 ASN 184 182 182 ASN ASN A . n A 1 185 SER 185 183 183 SER SER A . n A 1 186 TRP 186 184 184 TRP TRP A . n A 1 187 GLY 187 185 185 GLY GLY A . n A 1 188 GLU 188 186 186 GLU GLU A . n A 1 189 ASN 189 187 187 ASN ASN A . n A 1 190 TRP 190 188 188 TRP TRP A . n A 1 191 GLY 191 189 189 GLY GLY A . n A 1 192 ASN 192 190 190 ASN ASN A . n A 1 193 LYS 193 191 191 LYS LYS A . n A 1 194 GLY 194 192 192 GLY GLY A . n A 1 195 TYR 195 193 193 TYR TYR A . n A 1 196 ILE 196 194 194 ILE ILE A . n A 1 197 LEU 197 195 195 LEU LEU A . n A 1 198 MET 198 196 196 MET MET A . n A 1 199 ALA 199 197 197 ALA ALA A . n A 1 200 ARG 200 198 198 ARG ARG A . n A 1 201 ASN 201 199 199 ASN ASN A . n A 1 202 LYS 202 200 200 LYS LYS A . n A 1 203 ASN 203 201 201 ASN ASN A . n A 1 204 ASN 204 202 202 ASN ASN A . n A 1 205 ALA 205 203 203 ALA ALA A . n A 1 206 CYS 206 204 204 CYS CYS A . n A 1 207 GLY 207 205 205 GLY GLY A . n A 1 208 ILE 208 206 206 ILE ILE A . n A 1 209 ALA 209 207 207 ALA ALA A . n A 1 210 ASN 210 208 208 ASN ASN A . n A 1 211 LEU 211 209 209 LEU LEU A . n A 1 212 ALA 212 210 210 ALA ALA A . n A 1 213 SER 213 211 211 SER SER A . n A 1 214 PHE 214 212 212 PHE PHE A . n A 1 215 PRO 215 213 213 PRO PRO A . n A 1 216 LYS 216 214 214 LYS LYS A . n A 1 217 MET 217 215 215 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IHI 1 300 300 IHI IHI A . C 3 HOH 1 401 401 HOH HOH A . C 3 HOH 2 402 402 HOH HOH A . C 3 HOH 3 403 403 HOH HOH A . C 3 HOH 4 405 405 HOH HOH A . C 3 HOH 5 406 406 HOH HOH A . C 3 HOH 6 407 407 HOH HOH A . C 3 HOH 7 408 408 HOH HOH A . C 3 HOH 8 409 409 HOH HOH A . C 3 HOH 9 410 410 HOH HOH A . C 3 HOH 10 411 411 HOH HOH A . C 3 HOH 11 412 412 HOH HOH A . C 3 HOH 12 413 413 HOH HOH A . C 3 HOH 13 414 414 HOH HOH A . C 3 HOH 14 415 415 HOH HOH A . C 3 HOH 15 416 416 HOH HOH A . C 3 HOH 16 417 417 HOH HOH A . C 3 HOH 17 419 419 HOH HOH A . C 3 HOH 18 420 420 HOH HOH A . C 3 HOH 19 421 421 HOH HOH A . C 3 HOH 20 423 423 HOH HOH A . C 3 HOH 21 424 424 HOH HOH A . C 3 HOH 22 426 426 HOH HOH A . C 3 HOH 23 428 428 HOH HOH A . C 3 HOH 24 429 429 HOH HOH A . C 3 HOH 25 430 430 HOH HOH A . C 3 HOH 26 431 431 HOH HOH A . C 3 HOH 27 433 433 HOH HOH A . C 3 HOH 28 434 434 HOH HOH A . C 3 HOH 29 436 436 HOH HOH A . C 3 HOH 30 437 437 HOH HOH A . C 3 HOH 31 438 438 HOH HOH A . C 3 HOH 32 439 439 HOH HOH A . C 3 HOH 33 440 440 HOH HOH A . C 3 HOH 34 441 441 HOH HOH A . C 3 HOH 35 442 442 HOH HOH A . C 3 HOH 36 444 444 HOH HOH A . C 3 HOH 37 450 450 HOH HOH A . C 3 HOH 38 451 451 HOH HOH A . C 3 HOH 39 452 452 HOH HOH A . C 3 HOH 40 453 453 HOH HOH A . C 3 HOH 41 456 456 HOH HOH A . C 3 HOH 42 458 458 HOH HOH A . C 3 HOH 43 461 461 HOH HOH A . C 3 HOH 44 462 462 HOH HOH A . C 3 HOH 45 465 465 HOH HOH A . C 3 HOH 46 467 467 HOH HOH A . C 3 HOH 47 471 471 HOH HOH A . C 3 HOH 48 474 474 HOH HOH A . C 3 HOH 49 475 475 HOH HOH A . C 3 HOH 50 478 478 HOH HOH A . C 3 HOH 51 479 479 HOH HOH A . C 3 HOH 52 480 480 HOH HOH A . C 3 HOH 53 481 481 HOH HOH A . C 3 HOH 54 482 482 HOH HOH A . C 3 HOH 55 483 483 HOH HOH A . C 3 HOH 56 484 484 HOH HOH A . C 3 HOH 57 485 485 HOH HOH A . C 3 HOH 58 486 486 HOH HOH A . C 3 HOH 59 487 487 HOH HOH A . C 3 HOH 60 488 488 HOH HOH A . C 3 HOH 61 489 489 HOH HOH A . C 3 HOH 62 490 490 HOH HOH A . C 3 HOH 63 491 491 HOH HOH A . C 3 HOH 64 492 492 HOH HOH A . C 3 HOH 65 493 493 HOH HOH A . C 3 HOH 66 494 494 HOH HOH A . C 3 HOH 67 495 495 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-08-11 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 AUTOMAR 'data reduction' . ? 2 X-PLOR 'model building' 3.8 ? 3 X-PLOR refinement 98 ? 4 XDS 'data reduction' . ? 5 X-PLOR phasing 98.1 ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 146 ? ? -140.81 -24.86 2 1 ASN A 159 ? ? -110.72 73.70 3 1 LEU A 209 ? ? -145.49 56.84 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 77 ? CG ? A LYS 79 CG 2 1 Y 1 A LYS 77 ? CD ? A LYS 79 CD 3 1 Y 1 A LYS 77 ? CE ? A LYS 79 CE 4 1 Y 1 A LYS 77 ? NZ ? A LYS 79 NZ 5 1 Y 1 A LYS 119 ? CG ? A LYS 121 CG 6 1 Y 1 A LYS 119 ? CD ? A LYS 121 CD 7 1 Y 1 A LYS 119 ? CE ? A LYS 121 CE 8 1 Y 1 A LYS 119 ? NZ ? A LYS 121 NZ 9 1 Y 1 A GLU 153 ? CG ? A GLU 155 CG 10 1 Y 1 A GLU 153 ? CD ? A GLU 155 CD 11 1 Y 1 A GLU 153 ? OE1 ? A GLU 155 OE1 12 1 Y 1 A GLU 153 ? OE2 ? A GLU 155 OE2 13 1 N 1 A IHI 300 ? C40 ? B IHI 1 C40 14 1 N 1 A IHI 300 ? C41 ? B IHI 1 C41 15 1 N 1 A IHI 300 ? N51 ? B IHI 1 N51 16 1 N 1 A IHI 300 ? C52 ? B IHI 1 C52 17 1 N 1 A IHI 300 ? N53 ? B IHI 1 N53 18 1 N 1 A IHI 300 ? C54 ? B IHI 1 C54 19 1 N 1 A IHI 300 ? C55 ? B IHI 1 C55 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id -1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '9-CYCLOPENTYL-6-[2-(3-IMIDAZOL-1-YL-PROPOXY)-PHENYLAMINO]-9H-PURINE-2-CARBONITRILE' IHI 3 water HOH #