data_1UBD # _entry.id 1UBD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1UBD pdb_00001ubd 10.2210/pdb1ubd/pdb RCSB PDT038 ? ? WWPDB D_1000176902 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-12-23 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-02-03 5 'Structure model' 1 4 2021-11-03 6 'Structure model' 1 5 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Database references' 7 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 4 'Structure model' citation_author 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site 6 5 'Structure model' database_2 7 5 'Structure model' struct_ref_seq_dif 8 6 'Structure model' chem_comp_atom 9 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.identifier_ORCID' 2 4 'Structure model' '_citation_author.identifier_ORCID' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.value' 14 4 'Structure model' '_struct_conn.pdbx_dist_value' 15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 27 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 30 5 'Structure model' '_database_2.pdbx_DOI' 31 5 'Structure model' '_database_2.pdbx_database_accession' 32 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UBD _pdbx_database_status.recvd_initial_deposition_date 1996-10-04 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Houbaviy, H.B.' 1 ? 'Usheva, A.' 2 ? 'Shenk, T.' 3 ? 'Burley, S.K.' 4 0000-0002-2487-9713 # _citation.id primary _citation.title 'Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 93 _citation.page_first 13577 _citation.page_last 13582 _citation.year 1996 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8942976 _citation.pdbx_database_id_DOI 10.1073/pnas.93.24.13577 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Houbaviy, H.B.' 1 ? primary 'Usheva, A.' 2 ? primary 'Shenk, T.' 3 ? primary 'Burley, S.K.' 4 0000-0002-2487-9713 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*GP*GP*GP*TP*CP*TP*CP*CP*AP*TP*TP*TP*TP*GP*AP*A P*GP*CP*G)-3') ; 6164.989 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*GP*CP*TP*TP*CP*AP*AP*AP*AP*TP*GP*GP*AP*GP*AP*C P*CP*CP*T)-3') ; 6102.968 1 ? ? ? ? 3 polymer man 'PROTEIN (YY1 ZINC FINGER DOMAIN)' 14189.473 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 5 water nat water 18.015 87 ? ? ? ? # _entity_keywords.entity_id 3 _entity_keywords.text 'MUTANT D291M, A292E' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DG)(DG)(DG)(DT)(DC)(DT)(DC)(DC)(DA)(DT)(DT)(DT)(DT)(DG)(DA)(DA)(DG)(DC)(DG)' AGGGTCTCCATTTTGAAGCG A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DT)(DT)(DC)(DA)(DA)(DA)(DA)(DT)(DG)(DG)(DA)(DG)(DA)(DC)(DC)(DC)(DT)' CGCTTCAAAATGGAGACCCT B ? 3 'polypeptide(L)' no no ;MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ ; ;MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ ; C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DC n 1 7 DT n 1 8 DC n 1 9 DC n 1 10 DA n 1 11 DT n 1 12 DT n 1 13 DT n 1 14 DT n 1 15 DG n 1 16 DA n 1 17 DA n 1 18 DG n 1 19 DC n 1 20 DG n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DT n 2 5 DT n 2 6 DC n 2 7 DA n 2 8 DA n 2 9 DA n 2 10 DA n 2 11 DT n 2 12 DG n 2 13 DG n 2 14 DA n 2 15 DG n 2 16 DA n 2 17 DC n 2 18 DC n 2 19 DC n 2 20 DT n 3 1 MET n 3 2 GLU n 3 3 PRO n 3 4 ARG n 3 5 THR n 3 6 ILE n 3 7 ALA n 3 8 CYS n 3 9 PRO n 3 10 HIS n 3 11 LYS n 3 12 GLY n 3 13 CYS n 3 14 THR n 3 15 LYS n 3 16 MET n 3 17 PHE n 3 18 ARG n 3 19 ASP n 3 20 ASN n 3 21 SER n 3 22 ALA n 3 23 MET n 3 24 ARG n 3 25 LYS n 3 26 HIS n 3 27 LEU n 3 28 HIS n 3 29 THR n 3 30 HIS n 3 31 GLY n 3 32 PRO n 3 33 ARG n 3 34 VAL n 3 35 HIS n 3 36 VAL n 3 37 CYS n 3 38 ALA n 3 39 GLU n 3 40 CYS n 3 41 GLY n 3 42 LYS n 3 43 ALA n 3 44 PHE n 3 45 VAL n 3 46 GLU n 3 47 SER n 3 48 SER n 3 49 LYS n 3 50 LEU n 3 51 LYS n 3 52 ARG n 3 53 HIS n 3 54 GLN n 3 55 LEU n 3 56 VAL n 3 57 HIS n 3 58 THR n 3 59 GLY n 3 60 GLU n 3 61 LYS n 3 62 PRO n 3 63 PHE n 3 64 GLN n 3 65 CYS n 3 66 THR n 3 67 PHE n 3 68 GLU n 3 69 GLY n 3 70 CYS n 3 71 GLY n 3 72 LYS n 3 73 ARG n 3 74 PHE n 3 75 SER n 3 76 LEU n 3 77 ASP n 3 78 PHE n 3 79 ASN n 3 80 LEU n 3 81 ARG n 3 82 THR n 3 83 HIS n 3 84 VAL n 3 85 ARG n 3 86 ILE n 3 87 HIS n 3 88 THR n 3 89 GLY n 3 90 ASP n 3 91 ARG n 3 92 PRO n 3 93 TYR n 3 94 VAL n 3 95 CYS n 3 96 PRO n 3 97 PHE n 3 98 ASP n 3 99 GLY n 3 100 CYS n 3 101 ASN n 3 102 LYS n 3 103 LYS n 3 104 PHE n 3 105 ALA n 3 106 GLN n 3 107 SER n 3 108 THR n 3 109 ASN n 3 110 LEU n 3 111 LYS n 3 112 SER n 3 113 HIS n 3 114 ILE n 3 115 LEU n 3 116 THR n 3 117 HIS n 3 118 ALA n 3 119 LYS n 3 120 ALA n 3 121 LYS n 3 122 ASN n 3 123 ASN n 3 124 GLN n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DT 11 11 11 DT T A . n A 1 12 DT 12 12 12 DT T A . n A 1 13 DT 13 13 13 DT T A . n A 1 14 DT 14 14 14 DT T A . n A 1 15 DG 15 15 15 DG G A . n A 1 16 DA 16 16 16 DA A A . n A 1 17 DA 17 17 17 DA A A . n A 1 18 DG 18 18 18 DG G A . n A 1 19 DC 19 19 19 DC C A . n A 1 20 DG 20 20 20 DG G A . n B 2 1 DC 1 21 21 DC C B . n B 2 2 DG 2 22 22 DG G B . n B 2 3 DC 3 23 23 DC C B . n B 2 4 DT 4 24 24 DT T B . n B 2 5 DT 5 25 25 DT T B . n B 2 6 DC 6 26 26 DC C B . n B 2 7 DA 7 27 27 DA A B . n B 2 8 DA 8 28 28 DA A B . n B 2 9 DA 9 29 29 DA A B . n B 2 10 DA 10 30 30 DA A B . n B 2 11 DT 11 31 31 DT T B . n B 2 12 DG 12 32 32 DG G B . n B 2 13 DG 13 33 33 DG G B . n B 2 14 DA 14 34 34 DA A B . n B 2 15 DG 15 35 35 DG G B . n B 2 16 DA 16 36 36 DA A B . n B 2 17 DC 17 37 37 DC C B . n B 2 18 DC 18 38 38 DC C B . n B 2 19 DC 19 39 39 DC C B . n B 2 20 DT 20 40 40 DT T B . n C 3 1 MET 1 291 ? ? ? C . n C 3 2 GLU 2 292 ? ? ? C . n C 3 3 PRO 3 293 ? ? ? C . n C 3 4 ARG 4 294 ? ? ? C . n C 3 5 THR 5 295 295 THR THR C . n C 3 6 ILE 6 296 296 ILE ILE C . n C 3 7 ALA 7 297 297 ALA ALA C . n C 3 8 CYS 8 298 298 CYS CYS C . n C 3 9 PRO 9 299 299 PRO PRO C . n C 3 10 HIS 10 300 300 HIS HIS C . n C 3 11 LYS 11 301 301 LYS LYS C . n C 3 12 GLY 12 302 302 GLY GLY C . n C 3 13 CYS 13 303 303 CYS CYS C . n C 3 14 THR 14 304 304 THR THR C . n C 3 15 LYS 15 305 305 LYS LYS C . n C 3 16 MET 16 306 306 MET MET C . n C 3 17 PHE 17 307 307 PHE PHE C . n C 3 18 ARG 18 308 308 ARG ARG C . n C 3 19 ASP 19 309 309 ASP ASP C . n C 3 20 ASN 20 310 310 ASN ASN C . n C 3 21 SER 21 311 311 SER SER C . n C 3 22 ALA 22 312 312 ALA ALA C . n C 3 23 MET 23 313 313 MET MET C . n C 3 24 ARG 24 314 314 ARG ARG C . n C 3 25 LYS 25 315 315 LYS LYS C . n C 3 26 HIS 26 316 316 HIS HIS C . n C 3 27 LEU 27 317 317 LEU LEU C . n C 3 28 HIS 28 318 318 HIS HIS C . n C 3 29 THR 29 319 319 THR THR C . n C 3 30 HIS 30 320 320 HIS HIS C . n C 3 31 GLY 31 321 321 GLY GLY C . n C 3 32 PRO 32 322 322 PRO PRO C . n C 3 33 ARG 33 323 323 ARG ARG C . n C 3 34 VAL 34 324 324 VAL VAL C . n C 3 35 HIS 35 325 325 HIS HIS C . n C 3 36 VAL 36 326 326 VAL VAL C . n C 3 37 CYS 37 327 327 CYS CYS C . n C 3 38 ALA 38 328 328 ALA ALA C . n C 3 39 GLU 39 329 329 GLU GLU C . n C 3 40 CYS 40 330 330 CYS CYS C . n C 3 41 GLY 41 331 331 GLY GLY C . n C 3 42 LYS 42 332 332 LYS LYS C . n C 3 43 ALA 43 333 333 ALA ALA C . n C 3 44 PHE 44 334 334 PHE PHE C . n C 3 45 VAL 45 335 335 VAL VAL C . n C 3 46 GLU 46 336 336 GLU GLU C . n C 3 47 SER 47 337 337 SER SER C . n C 3 48 SER 48 338 338 SER SER C . n C 3 49 LYS 49 339 339 LYS LYS C . n C 3 50 LEU 50 340 340 LEU LEU C . n C 3 51 LYS 51 341 341 LYS LYS C . n C 3 52 ARG 52 342 342 ARG ARG C . n C 3 53 HIS 53 343 343 HIS HIS C . n C 3 54 GLN 54 344 344 GLN GLN C . n C 3 55 LEU 55 345 345 LEU LEU C . n C 3 56 VAL 56 346 346 VAL VAL C . n C 3 57 HIS 57 347 347 HIS HIS C . n C 3 58 THR 58 348 348 THR THR C . n C 3 59 GLY 59 349 349 GLY GLY C . n C 3 60 GLU 60 350 350 GLU GLU C . n C 3 61 LYS 61 351 351 LYS LYS C . n C 3 62 PRO 62 352 352 PRO PRO C . n C 3 63 PHE 63 353 353 PHE PHE C . n C 3 64 GLN 64 354 354 GLN GLN C . n C 3 65 CYS 65 355 355 CYS CYS C . n C 3 66 THR 66 356 356 THR THR C . n C 3 67 PHE 67 357 357 PHE PHE C . n C 3 68 GLU 68 358 358 GLU GLU C . n C 3 69 GLY 69 359 359 GLY GLY C . n C 3 70 CYS 70 360 360 CYS CYS C . n C 3 71 GLY 71 361 361 GLY GLY C . n C 3 72 LYS 72 362 362 LYS LYS C . n C 3 73 ARG 73 363 363 ARG ARG C . n C 3 74 PHE 74 364 364 PHE PHE C . n C 3 75 SER 75 365 365 SER SER C . n C 3 76 LEU 76 366 366 LEU LEU C . n C 3 77 ASP 77 367 367 ASP ASP C . n C 3 78 PHE 78 368 368 PHE PHE C . n C 3 79 ASN 79 369 369 ASN ASN C . n C 3 80 LEU 80 370 370 LEU LEU C . n C 3 81 ARG 81 371 371 ARG ARG C . n C 3 82 THR 82 372 372 THR THR C . n C 3 83 HIS 83 373 373 HIS HIS C . n C 3 84 VAL 84 374 374 VAL VAL C . n C 3 85 ARG 85 375 375 ARG ARG C . n C 3 86 ILE 86 376 376 ILE ILE C . n C 3 87 HIS 87 377 377 HIS HIS C . n C 3 88 THR 88 378 378 THR THR C . n C 3 89 GLY 89 379 379 GLY GLY C . n C 3 90 ASP 90 380 380 ASP ASP C . n C 3 91 ARG 91 381 381 ARG ARG C . n C 3 92 PRO 92 382 382 PRO PRO C . n C 3 93 TYR 93 383 383 TYR TYR C . n C 3 94 VAL 94 384 384 VAL VAL C . n C 3 95 CYS 95 385 385 CYS CYS C . n C 3 96 PRO 96 386 386 PRO PRO C . n C 3 97 PHE 97 387 387 PHE PHE C . n C 3 98 ASP 98 388 388 ASP ASP C . n C 3 99 GLY 99 389 389 GLY GLY C . n C 3 100 CYS 100 390 390 CYS CYS C . n C 3 101 ASN 101 391 391 ASN ASN C . n C 3 102 LYS 102 392 392 LYS LYS C . n C 3 103 LYS 103 393 393 LYS LYS C . n C 3 104 PHE 104 394 394 PHE PHE C . n C 3 105 ALA 105 395 395 ALA ALA C . n C 3 106 GLN 106 396 396 GLN GLN C . n C 3 107 SER 107 397 397 SER SER C . n C 3 108 THR 108 398 398 THR THR C . n C 3 109 ASN 109 399 399 ASN ASN C . n C 3 110 LEU 110 400 400 LEU LEU C . n C 3 111 LYS 111 401 401 LYS LYS C . n C 3 112 SER 112 402 402 SER SER C . n C 3 113 HIS 113 403 403 HIS HIS C . n C 3 114 ILE 114 404 404 ILE ILE C . n C 3 115 LEU 115 405 405 LEU LEU C . n C 3 116 THR 116 406 406 THR THR C . n C 3 117 HIS 117 407 407 HIS HIS C . n C 3 118 ALA 118 408 408 ALA ALA C . n C 3 119 LYS 119 409 ? ? ? C . n C 3 120 ALA 120 410 ? ? ? C . n C 3 121 LYS 121 411 ? ? ? C . n C 3 122 ASN 122 412 ? ? ? C . n C 3 123 ASN 123 413 ? ? ? C . n C 3 124 GLN 124 414 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 501 501 ZN ZN C . E 4 ZN 1 502 502 ZN ZN C . F 4 ZN 1 503 503 ZN ZN C . G 4 ZN 1 504 504 ZN ZN C . H 5 HOH 1 613 613 HOH HOH A . H 5 HOH 2 614 614 HOH HOH A . H 5 HOH 3 615 615 HOH HOH A . H 5 HOH 4 619 619 HOH HOH A . H 5 HOH 5 620 620 HOH HOH A . H 5 HOH 6 623 623 HOH HOH A . H 5 HOH 7 624 624 HOH HOH A . H 5 HOH 8 630 630 HOH HOH A . H 5 HOH 9 633 633 HOH HOH A . H 5 HOH 10 636 636 HOH HOH A . H 5 HOH 11 638 638 HOH HOH A . H 5 HOH 12 646 646 HOH HOH A . H 5 HOH 13 652 652 HOH HOH A . H 5 HOH 14 654 654 HOH HOH A . H 5 HOH 15 655 655 HOH HOH A . H 5 HOH 16 660 660 HOH HOH A . H 5 HOH 17 685 685 HOH HOH A . H 5 HOH 18 687 687 HOH HOH A . H 5 HOH 19 690 690 HOH HOH A . H 5 HOH 20 691 691 HOH HOH A . H 5 HOH 21 695 695 HOH HOH A . H 5 HOH 22 696 696 HOH HOH A . I 5 HOH 1 601 601 HOH HOH B . I 5 HOH 2 604 604 HOH HOH B . I 5 HOH 3 605 605 HOH HOH B . I 5 HOH 4 607 607 HOH HOH B . I 5 HOH 5 610 610 HOH HOH B . I 5 HOH 6 616 616 HOH HOH B . I 5 HOH 7 625 625 HOH HOH B . I 5 HOH 8 626 626 HOH HOH B . I 5 HOH 9 628 628 HOH HOH B . I 5 HOH 10 629 629 HOH HOH B . I 5 HOH 11 632 632 HOH HOH B . I 5 HOH 12 635 635 HOH HOH B . I 5 HOH 13 640 640 HOH HOH B . I 5 HOH 14 645 645 HOH HOH B . I 5 HOH 15 651 651 HOH HOH B . I 5 HOH 16 669 669 HOH HOH B . I 5 HOH 17 671 671 HOH HOH B . I 5 HOH 18 672 672 HOH HOH B . I 5 HOH 19 676 676 HOH HOH B . I 5 HOH 20 682 682 HOH HOH B . I 5 HOH 21 683 683 HOH HOH B . I 5 HOH 22 686 686 HOH HOH B . I 5 HOH 23 688 688 HOH HOH B . I 5 HOH 24 689 689 HOH HOH B . I 5 HOH 25 693 693 HOH HOH B . J 5 HOH 1 600 600 HOH HOH C . J 5 HOH 2 603 603 HOH HOH C . J 5 HOH 3 608 608 HOH HOH C . J 5 HOH 4 609 609 HOH HOH C . J 5 HOH 5 611 611 HOH HOH C . J 5 HOH 6 612 612 HOH HOH C . J 5 HOH 7 617 617 HOH HOH C . J 5 HOH 8 618 618 HOH HOH C . J 5 HOH 9 621 621 HOH HOH C . J 5 HOH 10 622 622 HOH HOH C . J 5 HOH 11 631 631 HOH HOH C . J 5 HOH 12 637 637 HOH HOH C . J 5 HOH 13 639 639 HOH HOH C . J 5 HOH 14 642 642 HOH HOH C . J 5 HOH 15 643 643 HOH HOH C . J 5 HOH 16 644 644 HOH HOH C . J 5 HOH 17 647 647 HOH HOH C . J 5 HOH 18 649 649 HOH HOH C . J 5 HOH 19 650 650 HOH HOH C . J 5 HOH 20 656 656 HOH HOH C . J 5 HOH 21 657 657 HOH HOH C . J 5 HOH 22 658 658 HOH HOH C . J 5 HOH 23 659 659 HOH HOH C . J 5 HOH 24 661 661 HOH HOH C . J 5 HOH 25 663 663 HOH HOH C . J 5 HOH 26 664 664 HOH HOH C . J 5 HOH 27 665 665 HOH HOH C . J 5 HOH 28 668 668 HOH HOH C . J 5 HOH 29 670 670 HOH HOH C . J 5 HOH 30 673 673 HOH HOH C . J 5 HOH 31 674 674 HOH HOH C . J 5 HOH 32 675 675 HOH HOH C . J 5 HOH 33 677 677 HOH HOH C . J 5 HOH 34 678 678 HOH HOH C . J 5 HOH 35 679 679 HOH HOH C . J 5 HOH 36 681 681 HOH HOH C . J 5 HOH 37 684 684 HOH HOH C . J 5 HOH 38 692 692 HOH HOH C . J 5 HOH 39 694 694 HOH HOH C . J 5 HOH 40 698 698 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C THR 295 ? OG1 ? C THR 5 OG1 2 1 Y 1 C THR 295 ? CG2 ? C THR 5 CG2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement 3.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _cell.entry_id 1UBD _cell.length_a 44.000 _cell.length_b 65.700 _cell.length_c 117.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UBD _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1UBD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 60.84 _exptl_crystal.density_Matthews 3.14 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1995-06-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12B' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1UBD _reflns.observed_criterion_sigma_I 3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs 12347 _reflns.number_all ? _reflns.percent_possible_obs 93.600 _reflns.pdbx_Rmerge_I_obs 0.0800000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.000 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1UBD _refine.ls_number_reflns_obs 9726 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.000 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2120000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2120000 _refine.ls_R_factor_R_free 0.3300000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;LOCAL SCALING OF F(OBSERVED) AGAINST F(CALCULATED) WITH LSCALE (AUTHOR: M. ROULD) TO CORRECT FOR ANISOTROPIC DIFFRACTION AND ABSORPTION EFFECTS ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 904 _refine_hist.pdbx_number_atoms_nucleic_acid 814 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 87 _refine_hist.number_atoms_total 1809 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 6.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.07 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? 1.500 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? 2.000 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? 2.000 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? 2.500 ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1UBD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1UBD _struct.title 'CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UBD _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text ;TRANSCRIPTION INITIATION, INITIATOR ELEMENT, YY1, ZINC FINGER PROTEIN, DNA- PROTEIN RECOGNITION, COMPLEX (TRANSCRIPTION REGULATION-DNA), TRANSCRIPTION-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP TYY1_HUMAN P25490 3 293 ? ? 2 PDB 1UBD 1UBD 1 ? ? ? 3 PDB 1UBD 1UBD 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1UBD C 1 ? 124 ? P25490 293 ? 414 ? 291 414 2 2 1UBD A 1 ? 20 ? 1UBD 1 ? 20 ? 1 20 3 3 1UBD B 1 ? 20 ? 1UBD 21 ? 40 ? 21 40 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1UBD MET C 1 ? UNP P25490 ASP 291 'engineered mutation' 291 1 1 1UBD GLU C 2 ? UNP P25490 ALA 292 'engineered mutation' 292 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN C 20 ? HIS C 30 ? ASN C 310 HIS C 320 1 ? 11 HELX_P HELX_P2 2 SER C 47 ? VAL C 56 ? SER C 337 VAL C 346 1 ? 10 HELX_P HELX_P3 3 ASP C 77 ? THR C 88 ? ASP C 367 THR C 378 1 ? 12 HELX_P HELX_P4 4 LYS C 111 ? THR C 116 ? LYS C 401 THR C 406 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C CYS 8 SG ? ? ? 1_555 D ZN . ZN ? ? C CYS 298 C ZN 501 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc2 metalc ? ? C CYS 13 SG ? ? ? 1_555 D ZN . ZN ? ? C CYS 303 C ZN 501 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc3 metalc ? ? C HIS 26 NE2 ? ? ? 1_555 D ZN . ZN ? ? C HIS 316 C ZN 501 1_555 ? ? ? ? ? ? ? 1.997 ? ? metalc4 metalc ? ? C HIS 30 NE2 ? ? ? 1_555 D ZN . ZN ? ? C HIS 320 C ZN 501 1_555 ? ? ? ? ? ? ? 2.008 ? ? metalc5 metalc ? ? C CYS 37 SG ? ? ? 1_555 E ZN . ZN ? ? C CYS 327 C ZN 502 1_555 ? ? ? ? ? ? ? 2.278 ? ? metalc6 metalc ? ? C CYS 40 SG ? ? ? 1_555 E ZN . ZN ? ? C CYS 330 C ZN 502 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc7 metalc ? ? C HIS 53 NE2 ? ? ? 1_555 E ZN . ZN ? ? C HIS 343 C ZN 502 1_555 ? ? ? ? ? ? ? 2.041 ? ? metalc8 metalc ? ? C HIS 57 NE2 ? ? ? 1_555 E ZN . ZN ? ? C HIS 347 C ZN 502 1_555 ? ? ? ? ? ? ? 2.007 ? ? metalc9 metalc ? ? C CYS 65 SG ? ? ? 1_555 F ZN . ZN ? ? C CYS 355 C ZN 503 1_555 ? ? ? ? ? ? ? 2.288 ? ? metalc10 metalc ? ? C CYS 70 SG ? ? ? 1_555 F ZN . ZN ? ? C CYS 360 C ZN 503 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc11 metalc ? ? C HIS 83 NE2 ? ? ? 1_555 F ZN . ZN ? ? C HIS 373 C ZN 503 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc12 metalc ? ? C HIS 87 NE2 ? ? ? 1_555 F ZN . ZN ? ? C HIS 377 C ZN 503 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc13 metalc ? ? C CYS 95 SG ? ? ? 1_555 G ZN . ZN ? ? C CYS 385 C ZN 504 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc14 metalc ? ? C CYS 100 SG ? ? ? 1_555 G ZN . ZN ? ? C CYS 390 C ZN 504 1_555 ? ? ? ? ? ? ? 2.361 ? ? metalc15 metalc ? ? C HIS 113 NE2 ? ? ? 1_555 G ZN . ZN ? ? C HIS 403 C ZN 504 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc16 metalc ? ? C HIS 117 NE2 ? ? ? 1_555 G ZN . ZN ? ? C HIS 407 C ZN 504 1_555 ? ? ? ? ? ? ? 2.018 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 20 N3 ? ? A DA 1 B DT 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 20 O4 ? ? A DA 1 B DT 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 19 N3 ? ? A DG 2 B DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 19 O2 ? ? A DG 2 B DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 19 N4 ? ? A DG 2 B DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 18 N3 ? ? A DG 3 B DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 18 O2 ? ? A DG 3 B DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 18 N4 ? ? A DG 3 B DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 17 N3 ? ? A DG 4 B DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 17 O2 ? ? A DG 4 B DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 17 N4 ? ? A DG 4 B DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 16 N1 ? ? A DT 5 B DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 16 N6 ? ? A DT 5 B DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 15 N1 ? ? A DC 6 B DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 15 O6 ? ? A DC 6 B DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 15 N2 ? ? A DC 6 B DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 14 N1 ? ? A DT 7 B DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 14 N6 ? ? A DT 7 B DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 13 N1 ? ? A DC 8 B DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 13 O6 ? ? A DC 8 B DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 13 N2 ? ? A DC 8 B DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 9 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 9 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 9 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 11 N3 ? ? A DA 10 B DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 11 O4 ? ? A DA 10 B DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 11 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 11 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 12 B DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 12 B DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 13 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 13 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 14 B DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 14 B DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 15 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 15 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 15 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DA 16 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 16 B DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DA 16 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 16 B DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DA 17 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 17 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DA 17 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 17 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 18 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 18 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 18 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 18 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 18 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 18 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 19 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 19 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DC 19 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 19 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DC 19 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 19 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 20 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 20 B DC 21 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 8 ? C CYS 298 ? 1_555 ZN ? D ZN . ? C ZN 501 ? 1_555 SG ? C CYS 13 ? C CYS 303 ? 1_555 110.4 ? 2 SG ? C CYS 8 ? C CYS 298 ? 1_555 ZN ? D ZN . ? C ZN 501 ? 1_555 NE2 ? C HIS 26 ? C HIS 316 ? 1_555 106.9 ? 3 SG ? C CYS 13 ? C CYS 303 ? 1_555 ZN ? D ZN . ? C ZN 501 ? 1_555 NE2 ? C HIS 26 ? C HIS 316 ? 1_555 109.3 ? 4 SG ? C CYS 8 ? C CYS 298 ? 1_555 ZN ? D ZN . ? C ZN 501 ? 1_555 NE2 ? C HIS 30 ? C HIS 320 ? 1_555 109.1 ? 5 SG ? C CYS 13 ? C CYS 303 ? 1_555 ZN ? D ZN . ? C ZN 501 ? 1_555 NE2 ? C HIS 30 ? C HIS 320 ? 1_555 110.9 ? 6 NE2 ? C HIS 26 ? C HIS 316 ? 1_555 ZN ? D ZN . ? C ZN 501 ? 1_555 NE2 ? C HIS 30 ? C HIS 320 ? 1_555 110.2 ? 7 SG ? C CYS 37 ? C CYS 327 ? 1_555 ZN ? E ZN . ? C ZN 502 ? 1_555 SG ? C CYS 40 ? C CYS 330 ? 1_555 112.6 ? 8 SG ? C CYS 37 ? C CYS 327 ? 1_555 ZN ? E ZN . ? C ZN 502 ? 1_555 NE2 ? C HIS 53 ? C HIS 343 ? 1_555 108.7 ? 9 SG ? C CYS 40 ? C CYS 330 ? 1_555 ZN ? E ZN . ? C ZN 502 ? 1_555 NE2 ? C HIS 53 ? C HIS 343 ? 1_555 107.2 ? 10 SG ? C CYS 37 ? C CYS 327 ? 1_555 ZN ? E ZN . ? C ZN 502 ? 1_555 NE2 ? C HIS 57 ? C HIS 347 ? 1_555 108.7 ? 11 SG ? C CYS 40 ? C CYS 330 ? 1_555 ZN ? E ZN . ? C ZN 502 ? 1_555 NE2 ? C HIS 57 ? C HIS 347 ? 1_555 111.6 ? 12 NE2 ? C HIS 53 ? C HIS 343 ? 1_555 ZN ? E ZN . ? C ZN 502 ? 1_555 NE2 ? C HIS 57 ? C HIS 347 ? 1_555 107.9 ? 13 SG ? C CYS 65 ? C CYS 355 ? 1_555 ZN ? F ZN . ? C ZN 503 ? 1_555 SG ? C CYS 70 ? C CYS 360 ? 1_555 110.2 ? 14 SG ? C CYS 65 ? C CYS 355 ? 1_555 ZN ? F ZN . ? C ZN 503 ? 1_555 NE2 ? C HIS 83 ? C HIS 373 ? 1_555 115.3 ? 15 SG ? C CYS 70 ? C CYS 360 ? 1_555 ZN ? F ZN . ? C ZN 503 ? 1_555 NE2 ? C HIS 83 ? C HIS 373 ? 1_555 107.8 ? 16 SG ? C CYS 65 ? C CYS 355 ? 1_555 ZN ? F ZN . ? C ZN 503 ? 1_555 NE2 ? C HIS 87 ? C HIS 377 ? 1_555 105.5 ? 17 SG ? C CYS 70 ? C CYS 360 ? 1_555 ZN ? F ZN . ? C ZN 503 ? 1_555 NE2 ? C HIS 87 ? C HIS 377 ? 1_555 110.9 ? 18 NE2 ? C HIS 83 ? C HIS 373 ? 1_555 ZN ? F ZN . ? C ZN 503 ? 1_555 NE2 ? C HIS 87 ? C HIS 377 ? 1_555 107.1 ? 19 SG ? C CYS 95 ? C CYS 385 ? 1_555 ZN ? G ZN . ? C ZN 504 ? 1_555 SG ? C CYS 100 ? C CYS 390 ? 1_555 106.5 ? 20 SG ? C CYS 95 ? C CYS 385 ? 1_555 ZN ? G ZN . ? C ZN 504 ? 1_555 NE2 ? C HIS 113 ? C HIS 403 ? 1_555 111.8 ? 21 SG ? C CYS 100 ? C CYS 390 ? 1_555 ZN ? G ZN . ? C ZN 504 ? 1_555 NE2 ? C HIS 113 ? C HIS 403 ? 1_555 113.9 ? 22 SG ? C CYS 95 ? C CYS 385 ? 1_555 ZN ? G ZN . ? C ZN 504 ? 1_555 NE2 ? C HIS 117 ? C HIS 407 ? 1_555 108.4 ? 23 SG ? C CYS 100 ? C CYS 390 ? 1_555 ZN ? G ZN . ? C ZN 504 ? 1_555 NE2 ? C HIS 117 ? C HIS 407 ? 1_555 109.1 ? 24 NE2 ? C HIS 113 ? C HIS 403 ? 1_555 ZN ? G ZN . ? C ZN 504 ? 1_555 NE2 ? C HIS 117 ? C HIS 407 ? 1_555 107.0 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE C 6 ? ALA C 7 ? ILE C 296 ALA C 297 A 2 MET C 16 ? PHE C 17 ? MET C 306 PHE C 307 B 1 HIS C 35 ? VAL C 36 ? HIS C 325 VAL C 326 B 2 ALA C 43 ? PHE C 44 ? ALA C 333 PHE C 334 C 1 PHE C 63 ? GLN C 64 ? PHE C 353 GLN C 354 C 2 ARG C 73 ? PHE C 74 ? ARG C 363 PHE C 364 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE C 6 ? O ILE C 296 N PHE C 17 ? N PHE C 307 B 1 2 O HIS C 35 ? O HIS C 325 N PHE C 44 ? N PHE C 334 C 1 2 O PHE C 63 ? O PHE C 353 N PHE C 74 ? N PHE C 364 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C ZN 501 ? 4 'BINDING SITE FOR RESIDUE ZN C 501' AC2 Software C ZN 502 ? 4 'BINDING SITE FOR RESIDUE ZN C 502' AC3 Software C ZN 503 ? 4 'BINDING SITE FOR RESIDUE ZN C 503' AC4 Software C ZN 504 ? 4 'BINDING SITE FOR RESIDUE ZN C 504' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS C 8 ? CYS C 298 . ? 1_555 ? 2 AC1 4 CYS C 13 ? CYS C 303 . ? 1_555 ? 3 AC1 4 HIS C 26 ? HIS C 316 . ? 1_555 ? 4 AC1 4 HIS C 30 ? HIS C 320 . ? 1_555 ? 5 AC2 4 CYS C 37 ? CYS C 327 . ? 1_555 ? 6 AC2 4 CYS C 40 ? CYS C 330 . ? 1_555 ? 7 AC2 4 HIS C 53 ? HIS C 343 . ? 1_555 ? 8 AC2 4 HIS C 57 ? HIS C 347 . ? 1_555 ? 9 AC3 4 CYS C 65 ? CYS C 355 . ? 1_555 ? 10 AC3 4 CYS C 70 ? CYS C 360 . ? 1_555 ? 11 AC3 4 HIS C 83 ? HIS C 373 . ? 1_555 ? 12 AC3 4 HIS C 87 ? HIS C 377 . ? 1_555 ? 13 AC4 4 CYS C 95 ? CYS C 385 . ? 1_555 ? 14 AC4 4 CYS C 100 ? CYS C 390 . ? 1_555 ? 15 AC4 4 HIS C 113 ? HIS C 403 . ? 1_555 ? 16 AC4 4 HIS C 117 ? HIS C 407 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.548 1.496 0.052 0.006 N 2 1 C5 A DT 11 ? ? C7 A DT 11 ? ? 1.535 1.496 0.039 0.006 N 3 1 P B DG 22 ? ? "O5'" B DG 22 ? ? 1.656 1.593 0.063 0.010 N 4 1 "C5'" B DG 22 ? ? "C4'" B DG 22 ? ? 1.561 1.512 0.049 0.007 N 5 1 "O3'" B DA 29 ? ? "C3'" B DA 29 ? ? 1.362 1.419 -0.057 0.006 N 6 1 "O3'" B DA 29 ? ? P B DA 30 ? ? 1.530 1.607 -0.077 0.012 Y 7 1 C6 B DA 30 ? ? N1 B DA 30 ? ? 1.303 1.351 -0.048 0.007 N 8 1 C5 B DT 31 ? ? C7 B DT 31 ? ? 1.538 1.496 0.042 0.006 N 9 1 "C5'" B DC 38 ? ? "C4'" B DC 38 ? ? 1.567 1.512 0.055 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C4'" A DA 1 ? ? "C3'" A DA 1 ? ? 100.54 104.50 -3.96 0.40 N 2 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 110.64 108.30 2.34 0.30 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.77 108.30 4.47 0.30 N 4 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.34 108.30 4.04 0.30 N 5 1 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.00 122.90 -3.90 0.60 N 6 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.61 108.30 3.31 0.30 N 7 1 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DT 7 ? ? 127.57 119.70 7.87 1.20 Y 8 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 99.78 105.90 -6.12 0.80 N 9 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.38 122.90 -5.52 0.60 N 10 1 "C1'" A DC 8 ? ? "O4'" A DC 8 ? ? "C4'" A DC 8 ? ? 102.46 110.10 -7.64 1.00 N 11 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.48 108.30 3.18 0.30 N 12 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.40 108.30 3.10 0.30 N 13 1 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.66 122.90 -4.24 0.60 N 14 1 "C3'" A DT 12 ? ? "O3'" A DT 12 ? ? P A DT 13 ? ? 129.75 119.70 10.05 1.20 Y 15 1 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 112.58 108.30 4.28 0.30 N 16 1 "O4'" A DA 16 ? ? "C1'" A DA 16 ? ? N9 A DA 16 ? ? 110.93 108.30 2.63 0.30 N 17 1 "O4'" A DA 17 ? ? "C4'" A DA 17 ? ? "C3'" A DA 17 ? ? 100.47 104.50 -4.03 0.40 N 18 1 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 113.41 108.30 5.11 0.30 N 19 1 "C3'" A DC 19 ? ? "C2'" A DC 19 ? ? "C1'" A DC 19 ? ? 96.85 102.40 -5.55 0.80 N 20 1 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 111.77 108.30 3.47 0.30 N 21 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 115.53 108.30 7.23 0.30 N 22 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 115.78 108.30 7.48 0.30 N 23 1 "O4'" B DT 24 ? ? "C1'" B DT 24 ? ? N1 B DT 24 ? ? 115.62 108.30 7.32 0.30 N 24 1 "O4'" B DT 25 ? ? "C1'" B DT 25 ? ? N1 B DT 25 ? ? 112.16 108.30 3.86 0.30 N 25 1 C6 B DT 25 ? ? C5 B DT 25 ? ? C7 B DT 25 ? ? 118.88 122.90 -4.02 0.60 N 26 1 "C1'" B DC 26 ? ? "O4'" B DC 26 ? ? "C4'" B DC 26 ? ? 100.96 110.10 -9.14 1.00 N 27 1 "O4'" B DA 27 ? ? "C1'" B DA 27 ? ? N9 B DA 27 ? ? 112.22 108.30 3.92 0.30 N 28 1 "O4'" B DA 28 ? ? "C1'" B DA 28 ? ? N9 B DA 28 ? ? 110.31 108.30 2.01 0.30 N 29 1 "O4'" B DA 29 ? ? "C1'" B DA 29 ? ? N9 B DA 29 ? ? 102.12 108.00 -5.88 0.70 N 30 1 "C1'" B DA 30 ? ? "O4'" B DA 30 ? ? "C4'" B DA 30 ? ? 103.68 110.10 -6.42 1.00 N 31 1 "O4'" B DT 31 ? ? "C1'" B DT 31 ? ? "C2'" B DT 31 ? ? 99.62 105.90 -6.28 0.80 N 32 1 "O4'" B DT 31 ? ? "C1'" B DT 31 ? ? N1 B DT 31 ? ? 110.38 108.30 2.08 0.30 N 33 1 C6 B DT 31 ? ? C5 B DT 31 ? ? C7 B DT 31 ? ? 118.85 122.90 -4.05 0.60 N 34 1 "O4'" B DG 32 ? ? "C1'" B DG 32 ? ? N9 B DG 32 ? ? 112.82 108.30 4.52 0.30 N 35 1 "O4'" B DG 33 ? ? "C1'" B DG 33 ? ? N9 B DG 33 ? ? 112.87 108.30 4.57 0.30 N 36 1 "O4'" B DA 34 ? ? "C1'" B DA 34 ? ? N9 B DA 34 ? ? 110.55 108.30 2.25 0.30 N 37 1 "O4'" B DG 35 ? ? "C1'" B DG 35 ? ? N9 B DG 35 ? ? 114.70 108.30 6.40 0.30 N 38 1 "C3'" B DG 35 ? ? "O3'" B DG 35 ? ? P B DA 36 ? ? 130.08 119.70 10.38 1.20 Y 39 1 "C3'" B DA 36 ? ? "O3'" B DA 36 ? ? P B DC 37 ? ? 129.71 119.70 10.01 1.20 Y 40 1 "O4'" B DC 37 ? ? "C1'" B DC 37 ? ? N1 B DC 37 ? ? 111.31 108.30 3.01 0.30 N 41 1 "C1'" B DC 38 ? ? "O4'" B DC 38 ? ? "C4'" B DC 38 ? ? 103.84 110.10 -6.26 1.00 N 42 1 "O4'" B DC 38 ? ? "C1'" B DC 38 ? ? "C2'" B DC 38 ? ? 98.96 105.90 -6.94 0.80 N 43 1 "O4'" B DC 38 ? ? "C1'" B DC 38 ? ? N1 B DC 38 ? ? 114.11 108.30 5.81 0.30 N 44 1 "O4'" B DC 39 ? ? "C4'" B DC 39 ? ? "C3'" B DC 39 ? ? 101.51 104.50 -2.99 0.40 N 45 1 "O4'" B DT 40 ? ? "C1'" B DT 40 ? ? N1 B DT 40 ? ? 117.41 108.30 9.11 0.30 N 46 1 C6 B DT 40 ? ? C5 B DT 40 ? ? C7 B DT 40 ? ? 118.59 122.90 -4.31 0.60 N 47 1 C C LYS 351 ? ? N C PRO 352 ? ? CA C PRO 352 ? ? 128.83 119.30 9.53 1.50 Y 48 1 NE C ARG 363 ? ? CZ C ARG 363 ? ? NH1 C ARG 363 ? ? 125.11 120.30 4.81 0.50 N 49 1 NE C ARG 363 ? ? CZ C ARG 363 ? ? NH2 C ARG 363 ? ? 115.90 120.30 -4.40 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO C 299 ? ? -48.32 -72.05 2 1 HIS C 300 ? ? -8.92 111.16 3 1 LYS C 301 ? ? -16.55 -84.45 4 1 CYS C 360 ? ? -86.33 -90.35 5 1 ASP C 380 ? ? -59.04 91.66 6 1 TYR C 383 ? ? -112.72 77.94 7 1 ASP C 388 ? ? -53.71 108.00 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 1 ? ? 0.071 'SIDE CHAIN' 2 1 DC B 38 ? ? 0.068 'SIDE CHAIN' 3 1 DT B 40 ? ? 0.069 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C MET 291 ? C MET 1 2 1 Y 1 C GLU 292 ? C GLU 2 3 1 Y 1 C PRO 293 ? C PRO 3 4 1 Y 1 C ARG 294 ? C ARG 4 5 1 Y 1 C LYS 409 ? C LYS 119 6 1 Y 1 C ALA 410 ? C ALA 120 7 1 Y 1 C LYS 411 ? C LYS 121 8 1 Y 1 C ASN 412 ? C ASN 122 9 1 Y 1 C ASN 413 ? C ASN 123 10 1 Y 1 C GLN 414 ? C GLN 124 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TYR N N N N 464 TYR CA C N S 465 TYR C C N N 466 TYR O O N N 467 TYR CB C N N 468 TYR CG C Y N 469 TYR CD1 C Y N 470 TYR CD2 C Y N 471 TYR CE1 C Y N 472 TYR CE2 C Y N 473 TYR CZ C Y N 474 TYR OH O N N 475 TYR OXT O N N 476 TYR H H N N 477 TYR H2 H N N 478 TYR HA H N N 479 TYR HB2 H N N 480 TYR HB3 H N N 481 TYR HD1 H N N 482 TYR HD2 H N N 483 TYR HE1 H N N 484 TYR HE2 H N N 485 TYR HH H N N 486 TYR HXT H N N 487 VAL N N N N 488 VAL CA C N S 489 VAL C C N N 490 VAL O O N N 491 VAL CB C N N 492 VAL CG1 C N N 493 VAL CG2 C N N 494 VAL OXT O N N 495 VAL H H N N 496 VAL H2 H N N 497 VAL HA H N N 498 VAL HB H N N 499 VAL HG11 H N N 500 VAL HG12 H N N 501 VAL HG13 H N N 502 VAL HG21 H N N 503 VAL HG22 H N N 504 VAL HG23 H N N 505 VAL HXT H N N 506 ZN ZN ZN N N 507 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TYR N CA sing N N 455 TYR N H sing N N 456 TYR N H2 sing N N 457 TYR CA C sing N N 458 TYR CA CB sing N N 459 TYR CA HA sing N N 460 TYR C O doub N N 461 TYR C OXT sing N N 462 TYR CB CG sing N N 463 TYR CB HB2 sing N N 464 TYR CB HB3 sing N N 465 TYR CG CD1 doub Y N 466 TYR CG CD2 sing Y N 467 TYR CD1 CE1 sing Y N 468 TYR CD1 HD1 sing N N 469 TYR CD2 CE2 doub Y N 470 TYR CD2 HD2 sing N N 471 TYR CE1 CZ doub Y N 472 TYR CE1 HE1 sing N N 473 TYR CE2 CZ sing Y N 474 TYR CE2 HE2 sing N N 475 TYR CZ OH sing N N 476 TYR OH HH sing N N 477 TYR OXT HXT sing N N 478 VAL N CA sing N N 479 VAL N H sing N N 480 VAL N H2 sing N N 481 VAL CA C sing N N 482 VAL CA CB sing N N 483 VAL CA HA sing N N 484 VAL C O doub N N 485 VAL C OXT sing N N 486 VAL CB CG1 sing N N 487 VAL CB CG2 sing N N 488 VAL CB HB sing N N 489 VAL CG1 HG11 sing N N 490 VAL CG1 HG12 sing N N 491 VAL CG1 HG13 sing N N 492 VAL CG2 HG21 sing N N 493 VAL CG2 HG22 sing N N 494 VAL CG2 HG23 sing N N 495 VAL OXT HXT sing N N 496 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1UBD 'double helix' 1UBD 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 20 1_555 2.051 -0.188 0.178 -6.921 -6.099 -25.004 1 A_DA1:DT40_B A 1 ? B 40 ? 20 1 1 A DG 2 1_555 B DC 19 1_555 0.926 -0.352 0.413 13.461 6.830 -3.659 2 A_DG2:DC39_B A 2 ? B 39 ? 19 1 1 A DG 3 1_555 B DC 18 1_555 0.437 -0.314 0.417 6.228 -3.808 -3.166 3 A_DG3:DC38_B A 3 ? B 38 ? 19 1 1 A DG 4 1_555 B DC 17 1_555 -0.269 -0.273 0.349 9.476 -14.708 -3.528 4 A_DG4:DC37_B A 4 ? B 37 ? 19 1 1 A DT 5 1_555 B DA 16 1_555 0.021 -0.404 0.421 1.007 -15.345 -1.992 5 A_DT5:DA36_B A 5 ? B 36 ? 20 1 1 A DC 6 1_555 B DG 15 1_555 -0.091 -0.362 0.791 -17.777 -18.049 -2.152 6 A_DC6:DG35_B A 6 ? B 35 ? 19 1 1 A DT 7 1_555 B DA 14 1_555 -0.845 -0.115 0.328 -7.508 -13.400 2.360 7 A_DT7:DA34_B A 7 ? B 34 ? 20 1 1 A DC 8 1_555 B DG 13 1_555 0.610 -0.218 0.211 -2.653 -8.736 -2.592 8 A_DC8:DG33_B A 8 ? B 33 ? 19 1 1 A DC 9 1_555 B DG 12 1_555 0.144 -0.262 0.235 -2.521 -6.564 0.358 9 A_DC9:DG32_B A 9 ? B 32 ? 19 1 1 A DA 10 1_555 B DT 11 1_555 0.503 -0.235 -0.109 8.787 -9.813 -3.250 10 A_DA10:DT31_B A 10 ? B 31 ? 20 1 1 A DT 11 1_555 B DA 10 1_555 0.109 -0.348 -0.352 -6.459 -19.007 2.117 11 A_DT11:DA30_B A 11 ? B 30 ? 20 1 1 A DT 12 1_555 B DA 9 1_555 -0.019 -0.067 -0.439 -4.439 -15.929 6.274 12 A_DT12:DA29_B A 12 ? B 29 ? 20 1 1 A DT 13 1_555 B DA 8 1_555 0.151 -0.163 -0.148 -1.626 -11.965 3.046 13 A_DT13:DA28_B A 13 ? B 28 ? 20 1 1 A DT 14 1_555 B DA 7 1_555 -0.870 -0.230 0.024 4.614 -20.236 1.194 14 A_DT14:DA27_B A 14 ? B 27 ? 20 1 1 A DG 15 1_555 B DC 6 1_555 0.256 -0.463 -0.799 -11.452 -15.425 -2.066 15 A_DG15:DC26_B A 15 ? B 26 ? 19 1 1 A DA 16 1_555 B DT 5 1_555 -0.430 -0.256 0.120 5.576 -9.324 7.825 16 A_DA16:DT25_B A 16 ? B 25 ? 20 1 1 A DA 17 1_555 B DT 4 1_555 1.407 -0.142 0.355 -4.508 -5.332 -16.954 17 A_DA17:DT24_B A 17 ? B 24 ? 20 1 1 A DG 18 1_555 B DC 3 1_555 0.257 -0.359 0.356 -3.557 -5.642 -0.474 18 A_DG18:DC23_B A 18 ? B 23 ? 19 1 1 A DC 19 1_555 B DG 2 1_555 -0.706 -0.281 -0.479 19.695 -8.981 0.524 19 A_DC19:DG22_B A 19 ? B 22 ? 19 1 1 A DG 20 1_555 B DC 1 1_555 1.589 0.285 0.989 10.840 -16.819 15.093 20 A_DG20:DC21_B A 20 ? B 21 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 20 1_555 A DG 2 1_555 B DC 19 1_555 0.513 0.508 2.803 -3.301 1.328 26.943 0.796 -1.800 2.743 2.834 7.047 27.172 1 AA_DA1DG2:DC39DT40_BB A 1 ? B 40 ? A 2 ? B 39 ? 1 A DG 2 1_555 B DC 19 1_555 A DG 3 1_555 B DC 18 1_555 -0.585 0.452 3.606 -1.427 -0.701 35.571 0.851 0.727 3.616 -1.147 2.334 35.606 2 AA_DG2DG3:DC38DC39_BB A 2 ? B 39 ? A 3 ? B 38 ? 1 A DG 3 1_555 B DC 18 1_555 A DG 4 1_555 B DC 17 1_555 -0.688 -0.127 3.103 -1.825 4.100 30.850 -0.980 0.948 3.096 7.656 3.408 31.167 3 AA_DG3DG4:DC37DC38_BB A 3 ? B 38 ? A 4 ? B 37 ? 1 A DG 4 1_555 B DC 17 1_555 A DT 5 1_555 B DA 16 1_555 0.432 -0.911 3.581 -1.032 -8.233 35.150 -0.160 -0.862 3.680 -13.403 1.680 36.086 4 AA_DG4DT5:DA36DC37_BB A 4 ? B 37 ? A 5 ? B 36 ? 1 A DT 5 1_555 B DA 16 1_555 A DC 6 1_555 B DG 15 1_555 0.694 -0.089 3.742 4.975 -0.774 40.629 -0.030 -0.362 3.799 -1.109 -7.131 40.927 5 AA_DT5DC6:DG35DA36_BB A 5 ? B 36 ? A 6 ? B 35 ? 1 A DC 6 1_555 B DG 15 1_555 A DT 7 1_555 B DA 14 1_555 -0.964 -0.338 2.967 0.469 3.417 28.817 -1.350 2.016 2.892 6.834 -0.939 29.018 6 AA_DC6DT7:DA34DG35_BB A 6 ? B 35 ? A 7 ? B 34 ? 1 A DT 7 1_555 B DA 14 1_555 A DC 8 1_555 B DG 13 1_555 0.602 -0.038 3.125 -2.106 -6.171 38.475 0.653 -1.144 3.059 -9.283 3.168 39.003 7 AA_DT7DC8:DG33DA34_BB A 7 ? B 34 ? A 8 ? B 33 ? 1 A DC 8 1_555 B DG 13 1_555 A DC 9 1_555 B DG 12 1_555 0.434 -0.255 3.457 5.254 1.894 33.380 -0.765 0.158 3.464 3.268 -9.068 33.831 8 AA_DC8DC9:DG32DG33_BB A 8 ? B 33 ? A 9 ? B 32 ? 1 A DC 9 1_555 B DG 12 1_555 A DA 10 1_555 B DT 11 1_555 -0.110 0.074 2.875 2.969 8.076 37.526 -0.773 0.492 2.814 12.356 -4.542 38.465 9 AA_DC9DA10:DT31DG32_BB A 9 ? B 32 ? A 10 ? B 31 ? 1 A DA 10 1_555 B DT 11 1_555 A DT 11 1_555 B DA 10 1_555 0.592 -0.617 3.685 3.376 0.819 32.117 -1.274 -0.386 3.710 1.475 -6.079 32.300 10 AA_DA10DT11:DA30DT31_BB A 10 ? B 31 ? A 11 ? B 30 ? 1 A DT 11 1_555 B DA 10 1_555 A DT 12 1_555 B DA 9 1_555 -0.131 -0.392 3.210 0.003 -1.364 31.310 -0.473 0.244 3.224 -2.526 -0.006 31.339 11 AA_DT11DT12:DA29DA30_BB A 11 ? B 30 ? A 12 ? B 29 ? 1 A DT 12 1_555 B DA 9 1_555 A DT 13 1_555 B DA 8 1_555 0.314 -0.227 3.210 -3.230 4.635 37.684 -0.919 -0.879 3.125 7.126 4.966 38.090 12 AA_DT12DT13:DA28DA29_BB A 12 ? B 29 ? A 13 ? B 28 ? 1 A DT 13 1_555 B DA 8 1_555 A DT 14 1_555 B DA 7 1_555 0.025 -0.734 3.086 1.079 -4.317 28.682 -0.553 0.179 3.159 -8.648 -2.161 29.018 13 AA_DT13DT14:DA27DA28_BB A 13 ? B 28 ? A 14 ? B 27 ? 1 A DT 14 1_555 B DA 7 1_555 A DG 15 1_555 B DC 6 1_555 -0.150 -0.417 3.862 3.880 11.597 37.375 -2.229 0.761 3.551 17.532 -5.865 39.257 14 AA_DT14DG15:DC26DA27_BB A 14 ? B 27 ? A 15 ? B 26 ? 1 A DG 15 1_555 B DC 6 1_555 A DA 16 1_555 B DT 5 1_555 0.024 0.054 2.867 -10.870 -1.309 32.951 0.267 -1.503 2.719 -2.232 18.537 34.674 15 AA_DG15DA16:DT25DC26_BB A 15 ? B 26 ? A 16 ? B 25 ? 1 A DA 16 1_555 B DT 5 1_555 A DA 17 1_555 B DT 4 1_555 -1.138 -0.586 3.450 -1.331 -5.921 43.405 -0.181 1.389 3.528 -7.960 1.789 43.807 16 AA_DA16DA17:DT24DT25_BB A 16 ? B 25 ? A 17 ? B 24 ? 1 A DA 17 1_555 B DT 4 1_555 A DG 18 1_555 B DC 3 1_555 0.661 -0.485 3.176 -1.758 3.227 30.728 -1.507 -1.564 3.069 6.063 3.302 30.942 17 AA_DA17DG18:DC23DT24_BB A 17 ? B 24 ? A 18 ? B 23 ? 1 A DG 18 1_555 B DC 3 1_555 A DC 19 1_555 B DG 2 1_555 0.191 -1.320 2.848 11.116 -5.966 16.537 -1.197 4.061 2.750 -17.757 -33.084 20.773 18 AA_DG18DC19:DG22DC23_BB A 18 ? B 23 ? A 19 ? B 22 ? 1 A DC 19 1_555 B DG 2 1_555 A DG 20 1_555 B DC 1 1_555 1.836 0.899 3.584 -8.228 1.205 58.509 0.846 -2.311 3.338 1.226 8.372 59.045 19 AA_DC19DG20:DC21DG22_BB A 19 ? B 22 ? A 20 ? B 21 ? # _atom_sites.entry_id 1UBD _atom_sites.fract_transf_matrix[1][1] 0.022727 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015221 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008540 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_