HEADER ISOMERASE 06-JAN-97 1UDC TITLE STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-MANNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GALACTOSE-4-EPIMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPIMERASE; COMPND 5 EC: 5.1.3.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS UDP-GALACTOSE, EPIMERASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,H.M.HOLDEN REVDAT 5 14-FEB-24 1UDC 1 REMARK LINK ATOM REVDAT 4 16-NOV-11 1UDC 1 HETATM REVDAT 3 13-JUL-11 1UDC 1 VERSN REVDAT 2 24-FEB-09 1UDC 1 VERSN REVDAT 1 14-JAN-98 1UDC 0 JRNL AUTH J.B.THODEN,A.D.HEGEMAN,G.WESENBERG,M.C.CHAPEAU,P.A.FREY, JRNL AUTH 2 H.M.HOLDEN JRNL TITL STRUCTURAL ANALYSIS OF UDP-SUGAR BINDING TO UDP-GALACTOSE JRNL TITL 2 4-EPIMERASE FROM ESCHERICHIA COLI. JRNL REF BIOCHEMISTRY V. 36 6294 1997 JRNL REFN ISSN 0006-2960 JRNL PMID 9174344 JRNL DOI 10.1021/BI970025J REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2626 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 559 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.013 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.290 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 14.700; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.009 ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SET OF IDEAL BOND LENGTHS AND ANGLES REMARK 3 OTHER THAN ENGH AND HUBER USED DURING REFINEMENT REMARK 4 REMARK 4 1UDC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50521 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.170 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.60000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.30000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.30000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.30000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 583 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 682 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 846 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1049 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 747 O HOH A 749 1.83 REMARK 500 O HOH A 809 O HOH A 875 1.85 REMARK 500 O HOH A 902 O HOH A 1030 1.97 REMARK 500 O HOH A 777 O HOH A 992 2.05 REMARK 500 O HOH A 703 O HOH A 955 2.06 REMARK 500 O HOH A 746 O HOH A 1038 2.11 REMARK 500 O HOH A 639 O HOH A 653 2.12 REMARK 500 O HOH A 715 O HOH A 716 2.12 REMARK 500 O HOH A 798 O HOH A 799 2.15 REMARK 500 CD LYS A 92 O HOH A 1035 2.15 REMARK 500 O HOH A 1008 O HOH A 1045 2.16 REMARK 500 NH1 ARG A 211 O HOH A 977 2.17 REMARK 500 O HOH A 940 O HOH A 1034 2.18 REMARK 500 O HOH A 996 O HOH A 1046 2.18 REMARK 500 O HOH A 819 O HOH A 1047 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 678 O HOH A 678 6555 0.33 REMARK 500 O HOH A 1014 O HOH A 1014 4556 1.50 REMARK 500 O HOH A 704 O HOH A 704 5555 1.64 REMARK 500 O HOH A 627 O HOH A 1029 6665 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 62 CD GLU A 62 OE2 -0.079 REMARK 500 GLU A 67 CD GLU A 67 OE1 0.066 REMARK 500 GLU A 88 CD GLU A 88 OE2 0.073 REMARK 500 LYS A 92 CE LYS A 92 NZ 0.272 REMARK 500 GLU A 138 CD GLU A 138 OE1 0.089 REMARK 500 GLU A 191 CD GLU A 191 OE1 0.095 REMARK 500 GLU A 293 CD GLU A 293 OE1 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 2 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 2 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 26 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 26 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 31 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 58 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 THR A 76 CA - CB - CG2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG A 106 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 176 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 177 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 177 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 192 CB - CG - OD2 ANGL. DEV. = -8.7 DEGREES REMARK 500 ASP A 213 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 221 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 238 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 295 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP A 302 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 313 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ASP A 319 CB - CG - OD1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 319 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 84 13.57 -142.13 REMARK 500 SER A 123 -167.96 -101.01 REMARK 500 PHE A 178 -112.24 -93.41 REMARK 500 PHE A 218 86.01 -69.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 350 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 91 OE1 REMARK 620 2 HOH A 626 O 94.3 REMARK 620 3 HOH A 629 O 87.4 86.5 REMARK 620 4 HOH A 928 O 176.0 88.2 89.5 REMARK 620 5 HOH A 932 O 87.3 91.9 174.3 95.9 REMARK 620 6 HOH A 933 O 92.6 173.1 94.6 85.0 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 351 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 194 O REMARK 620 2 HOH A 547 O 170.7 REMARK 620 3 HOH A 549 O 93.7 95.0 REMARK 620 4 HOH A 736 O 86.9 96.8 88.9 REMARK 620 5 HOH A 740 O 91.7 83.9 96.3 174.6 REMARK 620 6 HOH A 974 O 81.9 90.5 165.4 77.0 97.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 352 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 334 O REMARK 620 2 HOH A 609 O 81.1 REMARK 620 3 HOH A 744 O 176.4 95.8 REMARK 620 4 HOH A 745 O 88.0 77.7 93.2 REMARK 620 5 HOH A 746 O 89.4 153.4 94.2 77.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFM A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 372 DBREF 1UDC A 1 338 UNP P09147 GALE_ECOLI 1 338 SEQRES 1 A 338 MET ARG VAL LEU VAL THR GLY GLY SER GLY TYR ILE GLY SEQRES 2 A 338 SER HIS THR CYS VAL GLN LEU LEU GLN ASN GLY HIS ASP SEQRES 3 A 338 VAL ILE ILE LEU ASP ASN LEU CYS ASN SER LYS ARG SER SEQRES 4 A 338 VAL LEU PRO VAL ILE GLU ARG LEU GLY GLY LYS HIS PRO SEQRES 5 A 338 THR PHE VAL GLU GLY ASP ILE ARG ASN GLU ALA LEU MET SEQRES 6 A 338 THR GLU ILE LEU HIS ASP HIS ALA ILE ASP THR VAL ILE SEQRES 7 A 338 HIS PHE ALA GLY LEU LYS ALA VAL GLY GLU SER VAL GLN SEQRES 8 A 338 LYS PRO LEU GLU TYR TYR ASP ASN ASN VAL ASN GLY THR SEQRES 9 A 338 LEU ARG LEU ILE SER ALA MET ARG ALA ALA ASN VAL LYS SEQRES 10 A 338 ASN PHE ILE PHE SER SER SER ALA THR VAL TYR GLY ASP SEQRES 11 A 338 GLN PRO LYS ILE PRO TYR VAL GLU SER PHE PRO THR GLY SEQRES 12 A 338 THR PRO GLN SER PRO TYR GLY LYS SER LYS LEU MET VAL SEQRES 13 A 338 GLU GLN ILE LEU THR ASP LEU GLN LYS ALA GLN PRO ASP SEQRES 14 A 338 TRP SER ILE ALA LEU LEU ARG TYR PHE ASN PRO VAL GLY SEQRES 15 A 338 ALA HIS PRO SER GLY ASP MET GLY GLU ASP PRO GLN GLY SEQRES 16 A 338 ILE PRO ASN ASN LEU MET PRO TYR ILE ALA GLN VAL ALA SEQRES 17 A 338 VAL GLY ARG ARG ASP SER LEU ALA ILE PHE GLY ASN ASP SEQRES 18 A 338 TYR PRO THR GLU ASP GLY THR GLY VAL ARG ASP TYR ILE SEQRES 19 A 338 HIS VAL MET ASP LEU ALA ASP GLY HIS VAL VAL ALA MET SEQRES 20 A 338 GLU LYS LEU ALA ASN LYS PRO GLY VAL HIS ILE TYR ASN SEQRES 21 A 338 LEU GLY ALA GLY VAL GLY ASN SER VAL LEU ASP VAL VAL SEQRES 22 A 338 ASN ALA PHE SER LYS ALA CYS GLY LYS PRO VAL ASN TYR SEQRES 23 A 338 HIS PHE ALA PRO ARG ARG GLU GLY ASP LEU PRO ALA TYR SEQRES 24 A 338 TRP ALA ASP ALA SER LYS ALA ASP ARG GLU LEU ASN TRP SEQRES 25 A 338 ARG VAL THR ARG THR LEU ASP GLU MET ALA GLN ASP THR SEQRES 26 A 338 TRP HIS TRP GLN SER ARG HIS PRO GLN GLY TYR PRO ASP HET NA A 350 1 HET NA A 351 1 HET NA A 352 1 HET NAD A 340 44 HET UFM A 341 36 HET PGE A 360 10 HET EDO A 370 4 HET EDO A 371 4 HET EDO A 372 4 HETNAM NA SODIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UFM URIDINE-5'-DIPHOSPHATE-MANNOSE HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NA 3(NA 1+) FORMUL 5 NAD C21 H27 N7 O14 P2 FORMUL 6 UFM C15 H24 N2 O17 P2 FORMUL 7 PGE C6 H14 O4 FORMUL 8 EDO 3(C2 H6 O2) FORMUL 11 HOH *559(H2 O) HELIX 1 1 TYR A 11 ASN A 23 1 13 HELIX 2 2 ARG A 38 GLY A 48 5 11 HELIX 3 3 GLU A 62 ASP A 71 1 10 HELIX 4 4 VAL A 86 GLN A 91 1 6 HELIX 5 5 PRO A 93 ALA A 114 1 22 HELIX 6 6 ALA A 125 TYR A 128 5 4 HELIX 7 7 PRO A 148 ALA A 166 1 19 HELIX 8 8 LEU A 200 ALA A 208 1 9 HELIX 9 9 VAL A 236 LEU A 250 1 15 HELIX 10 10 VAL A 269 CYS A 280 1 12 HELIX 11 11 SER A 304 LEU A 310 1 7 HELIX 12 12 LEU A 318 ARG A 331 1 14 SHEET 1 A 7 GLY A 255 LEU A 261 0 SHEET 2 A 7 SER A 171 TYR A 177 1 N ILE A 172 O GLY A 255 SHEET 3 A 7 ASN A 118 SER A 124 1 N PHE A 119 O SER A 171 SHEET 4 A 7 THR A 76 HIS A 79 1 N VAL A 77 O ILE A 120 SHEET 5 A 7 ARG A 2 THR A 6 1 N LEU A 4 O THR A 76 SHEET 6 A 7 ASP A 26 ASP A 31 1 N ASP A 26 O VAL A 3 SHEET 7 A 7 THR A 53 GLU A 56 1 N THR A 53 O ILE A 29 SHEET 1 B 2 ASN A 179 VAL A 181 0 SHEET 2 B 2 TYR A 233 HIS A 235 1 N ILE A 234 O ASN A 179 SHEET 1 C 2 LEU A 215 PHE A 218 0 SHEET 2 C 2 TYR A 286 ALA A 289 1 N HIS A 287 O LEU A 215 LINK OE1 GLN A 91 NA NA A 350 1555 1555 2.37 LINK O GLN A 194 NA NA A 351 1555 1555 2.32 LINK O GLN A 334 NA NA A 352 1555 1555 2.25 LINK NA NA A 350 O HOH A 626 1555 1555 2.49 LINK NA NA A 350 O HOH A 629 1555 1555 2.29 LINK NA NA A 350 O HOH A 928 1555 1555 2.51 LINK NA NA A 350 O HOH A 932 1555 1555 2.53 LINK NA NA A 350 O HOH A 933 1555 1555 2.40 LINK NA NA A 351 O HOH A 547 1555 1555 2.64 LINK NA NA A 351 O HOH A 549 1555 1555 2.45 LINK NA NA A 351 O HOH A 736 1555 1555 2.33 LINK NA NA A 351 O HOH A 740 1555 1555 2.18 LINK NA NA A 351 O HOH A 974 1555 1555 2.35 LINK NA NA A 352 O HOH A 609 1555 1555 2.47 LINK NA NA A 352 O HOH A 744 1555 1555 2.28 LINK NA NA A 352 O HOH A 745 1555 1555 2.57 LINK NA NA A 352 O HOH A 746 1555 1555 2.43 CISPEP 1 ILE A 134 PRO A 135 0 3.22 SITE 1 AC1 6 GLN A 91 HOH A 626 HOH A 629 HOH A 928 SITE 2 AC1 6 HOH A 932 HOH A 933 SITE 1 AC2 6 GLN A 194 HOH A 547 HOH A 549 HOH A 736 SITE 2 AC2 6 HOH A 740 HOH A 974 SITE 1 AC3 5 GLN A 334 HOH A 609 HOH A 744 HOH A 745 SITE 2 AC3 5 HOH A 746 SITE 1 AC4 33 GLY A 7 GLY A 10 TYR A 11 ILE A 12 SITE 2 AC4 33 ASP A 31 ASN A 32 LEU A 33 CYS A 34 SITE 3 AC4 33 ASN A 35 SER A 36 GLY A 57 ASP A 58 SITE 4 AC4 33 ILE A 59 PHE A 80 ALA A 81 GLY A 82 SITE 5 AC4 33 LYS A 84 ASN A 99 SER A 122 SER A 123 SITE 6 AC4 33 TYR A 149 LYS A 153 TYR A 177 PRO A 180 SITE 7 AC4 33 UFM A 341 EDO A 370 HOH A 514 HOH A 518 SITE 8 AC4 33 HOH A 537 HOH A 538 HOH A 611 HOH A 612 SITE 9 AC4 33 HOH A 723 SITE 1 AC5 31 VAL A 86 THR A 126 TYR A 149 PHE A 178 SITE 2 AC5 31 ASN A 179 ASN A 198 ASN A 199 LEU A 200 SITE 3 AC5 31 LEU A 215 ALA A 216 ILE A 217 PHE A 218 SITE 4 AC5 31 GLY A 229 ARG A 231 TYR A 233 VAL A 269 SITE 5 AC5 31 ARG A 292 ASP A 295 TYR A 299 NAD A 340 SITE 6 AC5 31 EDO A 372 HOH A 615 HOH A 617 HOH A 660 SITE 7 AC5 31 HOH A 663 HOH A 722 HOH A 752 HOH A 754 SITE 8 AC5 31 HOH A 769 HOH A 923 HOH A1021 SITE 1 AC6 4 LEU A 250 LYS A 253 TYR A 259 GLU A 309 SITE 1 AC7 6 TYR A 11 ASN A 35 ASP A 192 NAD A 340 SITE 2 AC7 6 HOH A 510 HOH A 516 SITE 1 AC8 6 LEU A 94 GLU A 95 ASP A 98 ARG A 106 SITE 2 AC8 6 SER A 109 HOH A 640 SITE 1 AC9 7 LYS A 84 ALA A 85 VAL A 86 ASN A 198 SITE 2 AC9 7 UFM A 341 HOH A 616 HOH A 617 CRYST1 83.500 83.500 108.900 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011976 0.006914 0.000000 0.00000 SCALE2 0.000000 0.013829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009183 0.00000