HEADER HYDROLASE 29-APR-03 1UDE TITLE CRYSTAL STRUCTURE OF THE INORGANIC PYROPHOSPHATASE FROM THE TITLE 2 HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS HORIKOSHII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.6.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 GENE: PPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BE21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS INORGANIC PYROPHOSPHATASE X-RAY CRYSTALLOGRAPHIC ANALYSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.LIU,R.GAO,W.ZHOU,M.BARTLAM,Z.RAO REVDAT 5 27-DEC-23 1UDE 1 REMARK REVDAT 4 06-NOV-19 1UDE 1 JRNL SEQADV REVDAT 3 13-JUL-11 1UDE 1 VERSN REVDAT 2 24-FEB-09 1UDE 1 VERSN REVDAT 1 20-JAN-04 1UDE 0 JRNL AUTH B.LIU,M.BARTLAM,R.GAO,W.ZHOU,H.PANG,Y.LIU,Y.FENG,Z.RAO JRNL TITL CRYSTAL STRUCTURE OF THE HYPERTHERMOPHILIC INORGANIC JRNL TITL 2 PYROPHOSPHATASE FROM THE ARCHAEON PYROCOCCUS HORIKOSHII. JRNL REF BIOPHYS.J. V. 86 420 2004 JRNL REFN ISSN 0006-3495 JRNL PMID 14695284 JRNL DOI 10.1016/S0006-3495(04)74118-1 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 16857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1687 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2268 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 268 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4145 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.947 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INORGANIC PYROPHOSPHATASE SULFOLOBUS REMARK 3 ACIDOCALDARIUS (S-PPASE) REMARK 4 REMARK 4 1UDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000005699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17030 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.930 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NA ACETETE, PH 5.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.91350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.34350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.91350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.34350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 TRIMER IN THE ASYMMETRIC UNIT BY CRYSTALLOGRAPHIC QUADRATIC REMARK 300 OPERATIONS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 143.65400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 173 REMARK 465 LYS A 174 REMARK 465 PHE A 175 REMARK 465 GLY A 176 REMARK 465 LYS A 177 REMARK 465 LYS A 178 REMARK 465 GLU A 179 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 PRO B 3 REMARK 465 LYS B 172 REMARK 465 GLU B 173 REMARK 465 LYS B 174 REMARK 465 PHE B 175 REMARK 465 GLY B 176 REMARK 465 LYS B 177 REMARK 465 LYS B 178 REMARK 465 GLU B 179 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 SER C -10 REMARK 465 SER C -9 REMARK 465 GLY C -8 REMARK 465 LEU C -7 REMARK 465 VAL C -6 REMARK 465 PRO C -5 REMARK 465 ARG C -4 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 PRO C 3 REMARK 465 LYS C 172 REMARK 465 GLU C 173 REMARK 465 LYS C 174 REMARK 465 PHE C 175 REMARK 465 GLY C 176 REMARK 465 LYS C 177 REMARK 465 LYS C 178 REMARK 465 GLU C 179 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR C 171 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL C 13 N GLU C 15 2.10 REMARK 500 O VAL C 111 N ASP C 113 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG2 VAL C 13 CG2 VAL C 13 2655 1.78 REMARK 500 NH2 ARG C 139 NH2 ARG C 139 2755 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 98 C SER A 99 N -0.171 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 11 C - N - CD ANGL. DEV. = -15.5 DEGREES REMARK 500 ASP B 66 C - N - CA ANGL. DEV. = -21.8 DEGREES REMARK 500 HIS C 5 CB - CA - C ANGL. DEV. = -31.8 DEGREES REMARK 500 ASP C 6 N - CA - CB ANGL. DEV. = 18.7 DEGREES REMARK 500 PRO C 11 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 PRO C 11 C - N - CD ANGL. DEV. = -29.7 DEGREES REMARK 500 PRO C 14 CA - N - CD ANGL. DEV. = -26.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 11 -128.37 -61.79 REMARK 500 VAL A 13 -56.68 -14.48 REMARK 500 PRO A 14 -77.58 -62.50 REMARK 500 LYS A 35 -84.14 -61.18 REMARK 500 GLU A 36 -70.34 -55.50 REMARK 500 ARG A 44 165.37 171.80 REMARK 500 PRO A 49 49.15 -59.62 REMARK 500 GLU A 65 -65.83 -28.87 REMARK 500 LEU A 83 2.25 95.78 REMARK 500 SER A 99 72.99 30.77 REMARK 500 GLU A 112 33.35 -87.47 REMARK 500 HIS B 5 -44.76 -143.04 REMARK 500 ASP B 6 26.80 28.25 REMARK 500 PRO B 11 -123.20 -63.55 REMARK 500 VAL B 13 -73.41 -87.04 REMARK 500 LEU B 46 129.25 -38.42 REMARK 500 PRO B 49 43.15 -62.88 REMARK 500 TYR B 52 120.60 -39.66 REMARK 500 ARG B 61 70.41 49.11 REMARK 500 GLU B 65 -144.63 16.71 REMARK 500 ASP B 68 138.04 -25.92 REMARK 500 ASP B 98 -101.90 -89.57 REMARK 500 ASP B 103 50.74 -146.19 REMARK 500 GLU B 112 25.79 -75.24 REMARK 500 ILE B 122 -43.53 -27.87 REMARK 500 SER B 123 4.89 -65.06 REMARK 500 PRO B 126 146.70 -37.98 REMARK 500 ARG B 166 -70.27 -62.82 REMARK 500 ALA B 167 -33.12 -36.73 REMARK 500 HIS C 5 81.95 -6.08 REMARK 500 ASP C 6 110.55 84.38 REMARK 500 LEU C 7 120.99 172.53 REMARK 500 PRO C 9 -29.21 -35.21 REMARK 500 PRO C 11 3.80 -67.62 REMARK 500 ASN C 12 -23.01 -147.85 REMARK 500 VAL C 13 -175.03 67.82 REMARK 500 PRO C 14 -70.60 44.18 REMARK 500 GLU C 15 -104.56 -91.71 REMARK 500 VAL C 16 92.31 -48.98 REMARK 500 THR C 37 -64.56 -133.93 REMARK 500 LEU C 46 126.01 -29.76 REMARK 500 PRO C 49 44.13 -76.59 REMARK 500 ARG C 61 43.88 36.94 REMARK 500 GLU C 65 -34.76 7.02 REMARK 500 PRO C 69 -166.58 -70.21 REMARK 500 THR C 80 -144.89 -88.45 REMARK 500 ALA C 88 -159.39 -93.63 REMARK 500 ARG C 89 94.53 179.19 REMARK 500 ASP C 98 13.97 -62.73 REMARK 500 SER C 99 81.52 74.66 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1UDE A 1 179 UNP O59570 IPYR_PYRHO 1 178 DBREF 1UDE B 1 179 UNP O59570 IPYR_PYRHO 1 178 DBREF 1UDE C 1 179 UNP O59570 IPYR_PYRHO 1 178 SEQADV 1UDE HIS A -16 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS A -15 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS A -14 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS A -13 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS A -12 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS A -11 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER A -10 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER A -9 UNP O59570 EXPRESSION TAG SEQADV 1UDE GLY A -8 UNP O59570 EXPRESSION TAG SEQADV 1UDE LEU A -7 UNP O59570 EXPRESSION TAG SEQADV 1UDE VAL A -6 UNP O59570 EXPRESSION TAG SEQADV 1UDE PRO A -5 UNP O59570 EXPRESSION TAG SEQADV 1UDE ARG A -4 UNP O59570 EXPRESSION TAG SEQADV 1UDE GLY A -3 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER A -2 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS A -1 UNP O59570 EXPRESSION TAG SEQADV 1UDE MET A 0 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -16 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -15 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -14 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -13 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -12 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -11 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER B -10 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER B -9 UNP O59570 EXPRESSION TAG SEQADV 1UDE GLY B -8 UNP O59570 EXPRESSION TAG SEQADV 1UDE LEU B -7 UNP O59570 EXPRESSION TAG SEQADV 1UDE VAL B -6 UNP O59570 EXPRESSION TAG SEQADV 1UDE PRO B -5 UNP O59570 EXPRESSION TAG SEQADV 1UDE ARG B -4 UNP O59570 EXPRESSION TAG SEQADV 1UDE GLY B -3 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER B -2 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS B -1 UNP O59570 EXPRESSION TAG SEQADV 1UDE MET B 0 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -16 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -15 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -14 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -13 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -12 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -11 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER C -10 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER C -9 UNP O59570 EXPRESSION TAG SEQADV 1UDE GLY C -8 UNP O59570 EXPRESSION TAG SEQADV 1UDE LEU C -7 UNP O59570 EXPRESSION TAG SEQADV 1UDE VAL C -6 UNP O59570 EXPRESSION TAG SEQADV 1UDE PRO C -5 UNP O59570 EXPRESSION TAG SEQADV 1UDE ARG C -4 UNP O59570 EXPRESSION TAG SEQADV 1UDE GLY C -3 UNP O59570 EXPRESSION TAG SEQADV 1UDE SER C -2 UNP O59570 EXPRESSION TAG SEQADV 1UDE HIS C -1 UNP O59570 EXPRESSION TAG SEQADV 1UDE MET C 0 UNP O59570 EXPRESSION TAG SEQRES 1 A 195 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 195 GLY SER HIS MET MET ASN PRO PHE HIS ASP LEU GLU PRO SEQRES 3 A 195 GLY PRO ASN VAL PRO GLU VAL VAL TYR ALA LEU ILE GLU SEQRES 4 A 195 ILE PRO LYS GLY SER ARG ASN LYS TYR GLU LEU ASP LYS SEQRES 5 A 195 GLU THR GLY LEU LEU LYS LEU ASP ARG VAL LEU TYR THR SEQRES 6 A 195 PRO PHE HIS TYR PRO VAL ASP TYR GLY ILE ILE PRO ARG SEQRES 7 A 195 THR TRP TYR GLU ASP GLY ASP PRO PHE ASP ILE MET VAL SEQRES 8 A 195 ILE MET ARG GLU PRO THR TYR PRO LEU THR ILE ILE GLU SEQRES 9 A 195 ALA ARG PRO ILE GLY LEU PHE LYS MET ILE ASP SER GLY SEQRES 10 A 195 ASP LYS ASP TYR LYS VAL LEU ALA VAL PRO VAL GLU ASP SEQRES 11 A 195 PRO TYR PHE LYS ASP TRP LYS ASP ILE SER ASP VAL PRO SEQRES 12 A 195 LYS ALA PHE LEU ASP GLU ILE ALA HIS PHE PHE LYS ARG SEQRES 13 A 195 TYR LYS GLU LEU GLU GLY LYS GLU ILE ILE VAL GLU GLY SEQRES 14 A 195 TRP GLU GLY ALA GLU ALA ALA LYS ARG GLU ILE LEU ARG SEQRES 15 A 195 ALA ILE GLU MET TYR LYS GLU LYS PHE GLY LYS LYS GLU SEQRES 1 B 195 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 B 195 GLY SER HIS MET MET ASN PRO PHE HIS ASP LEU GLU PRO SEQRES 3 B 195 GLY PRO ASN VAL PRO GLU VAL VAL TYR ALA LEU ILE GLU SEQRES 4 B 195 ILE PRO LYS GLY SER ARG ASN LYS TYR GLU LEU ASP LYS SEQRES 5 B 195 GLU THR GLY LEU LEU LYS LEU ASP ARG VAL LEU TYR THR SEQRES 6 B 195 PRO PHE HIS TYR PRO VAL ASP TYR GLY ILE ILE PRO ARG SEQRES 7 B 195 THR TRP TYR GLU ASP GLY ASP PRO PHE ASP ILE MET VAL SEQRES 8 B 195 ILE MET ARG GLU PRO THR TYR PRO LEU THR ILE ILE GLU SEQRES 9 B 195 ALA ARG PRO ILE GLY LEU PHE LYS MET ILE ASP SER GLY SEQRES 10 B 195 ASP LYS ASP TYR LYS VAL LEU ALA VAL PRO VAL GLU ASP SEQRES 11 B 195 PRO TYR PHE LYS ASP TRP LYS ASP ILE SER ASP VAL PRO SEQRES 12 B 195 LYS ALA PHE LEU ASP GLU ILE ALA HIS PHE PHE LYS ARG SEQRES 13 B 195 TYR LYS GLU LEU GLU GLY LYS GLU ILE ILE VAL GLU GLY SEQRES 14 B 195 TRP GLU GLY ALA GLU ALA ALA LYS ARG GLU ILE LEU ARG SEQRES 15 B 195 ALA ILE GLU MET TYR LYS GLU LYS PHE GLY LYS LYS GLU SEQRES 1 C 195 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 C 195 GLY SER HIS MET MET ASN PRO PHE HIS ASP LEU GLU PRO SEQRES 3 C 195 GLY PRO ASN VAL PRO GLU VAL VAL TYR ALA LEU ILE GLU SEQRES 4 C 195 ILE PRO LYS GLY SER ARG ASN LYS TYR GLU LEU ASP LYS SEQRES 5 C 195 GLU THR GLY LEU LEU LYS LEU ASP ARG VAL LEU TYR THR SEQRES 6 C 195 PRO PHE HIS TYR PRO VAL ASP TYR GLY ILE ILE PRO ARG SEQRES 7 C 195 THR TRP TYR GLU ASP GLY ASP PRO PHE ASP ILE MET VAL SEQRES 8 C 195 ILE MET ARG GLU PRO THR TYR PRO LEU THR ILE ILE GLU SEQRES 9 C 195 ALA ARG PRO ILE GLY LEU PHE LYS MET ILE ASP SER GLY SEQRES 10 C 195 ASP LYS ASP TYR LYS VAL LEU ALA VAL PRO VAL GLU ASP SEQRES 11 C 195 PRO TYR PHE LYS ASP TRP LYS ASP ILE SER ASP VAL PRO SEQRES 12 C 195 LYS ALA PHE LEU ASP GLU ILE ALA HIS PHE PHE LYS ARG SEQRES 13 C 195 TYR LYS GLU LEU GLU GLY LYS GLU ILE ILE VAL GLU GLY SEQRES 14 C 195 TRP GLU GLY ALA GLU ALA ALA LYS ARG GLU ILE LEU ARG SEQRES 15 C 195 ALA ILE GLU MET TYR LYS GLU LYS PHE GLY LYS LYS GLU FORMUL 4 HOH *93(H2 O) HELIX 1 1 ASP A 113 LYS A 117 5 5 HELIX 2 2 ASP A 121 VAL A 125 5 5 HELIX 3 3 PRO A 126 TYR A 140 1 15 HELIX 4 4 LYS A 141 GLY A 146 5 5 HELIX 5 5 ALA A 157 LYS A 172 1 16 HELIX 6 6 ASP B 113 LYS B 117 5 5 HELIX 7 7 ASP B 121 VAL B 125 5 5 HELIX 8 8 PRO B 126 TYR B 140 1 15 HELIX 9 9 LYS B 141 GLY B 146 5 5 HELIX 10 10 GLY B 156 MET B 170 1 15 HELIX 11 11 ASP C 113 LYS C 117 5 5 HELIX 12 12 ASP C 121 VAL C 125 5 5 HELIX 13 13 PRO C 126 LYS C 138 1 13 HELIX 14 14 LYS C 141 GLY C 146 5 5 HELIX 15 15 GLY C 156 MET C 170 1 15 SHEET 1 A 8 ASP A 101 LYS A 102 0 SHEET 2 A 8 ILE A 149 GLY A 156 0 SHEET 3 A 8 VAL A 17 ILE A 23 0 SHEET 4 A 8 ASP A 55 ILE A 58 -1 O TYR A 56 N ILE A 23 SHEET 5 A 8 ASP A 71 VAL A 74 -1 O VAL A 74 N ASP A 55 SHEET 6 A 8 LYS A 105 PRO A 110 1 O ALA A 108 N MET A 73 SHEET 7 A 8 ILE A 85 ASP A 98 -1 N PHE A 94 O LYS A 105 SHEET 8 A 8 ILE A 149 GLY A 156 -1 O GLU A 155 N LEU A 93 SHEET 1 B 7 ASN A 29 LEU A 33 0 SHEET 2 B 7 LEU A 40 VAL A 45 -1 O ARG A 44 N LYS A 30 SHEET 3 B 7 THR C 84 ALA C 88 1 O ILE C 85 N LEU A 40 SHEET 4 B 7 VAL C 17 ILE C 23 -1 N ALA C 19 O ILE C 86 SHEET 5 B 7 ASP C 55 ILE C 59 -1 O TYR C 56 N ILE C 23 SHEET 6 B 7 PHE C 70 VAL C 74 -1 O ILE C 72 N GLY C 57 SHEET 7 B 7 VAL C 106 ALA C 108 1 O ALA C 108 N MET C 73 SHEET 1 C 9 ILE B 150 GLY B 153 0 SHEET 2 C 9 ASN C 29 LEU C 33 0 SHEET 3 C 9 VAL B 17 ILE B 23 0 SHEET 4 C 9 ASP B 55 ILE B 58 -1 O ILE B 58 N LEU B 20 SHEET 5 C 9 ASP B 71 VAL B 74 -1 O VAL B 74 N ASP B 55 SHEET 6 C 9 LYS B 105 PRO B 110 1 O VAL B 106 N MET B 73 SHEET 7 C 9 THR B 84 ILE B 97 -1 N ARG B 89 O VAL B 109 SHEET 8 C 9 LEU C 40 VAL C 45 1 O LEU C 42 N ILE B 85 SHEET 9 C 9 ASN C 29 LEU C 33 -1 N LYS C 30 O ARG C 44 SHEET 1 D 2 ASN B 29 LEU B 33 0 SHEET 2 D 2 LEU B 40 VAL B 45 -1 O ARG B 44 N LYS B 30 SHEET 1 E 2 LEU C 93 ILE C 97 0 SHEET 2 E 2 ILE C 150 GLU C 155 -1 O ILE C 150 N ILE C 97 CRYST1 71.827 86.687 92.823 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013922 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010773 0.00000